K9N638 (R1A_MERS1) Middle East respiratory syndrome-related coronavirus (isolate UnitedKingdom/H123990006/2012) (MERS-CoV) (Betacoronavirus England 1)

Replicase polyprotein 1a UniProtKBInterProInteractive Modelling

4391 aa; Sequence (Fasta) Identical sequences: Human betacoronavirus 2c England-Qatar/2012: M1RUQ1

Molecule Processing
Host translation inhibitor nsp1
Non-structural protein 2
Papain-like proteinase
Non-structural protein 4
3C-like proteinase
Non-structural protein 6
Non-structural protein 7
Non-structural protein 8
Non-structural protein 9
Non-structural protein 10
Non-structural protein 11

Sequence Features

Add
 1592For PL-PRO activity
 1759For PL-PRO activity
 3288For 3CL-PRO activity
 3395For 3CL-PRO activity
 4311Zinc
 4314Zinc
 4320Zinc
 4327Zinc
 4354Zinc
 4357Zinc
 4365Zinc
 2105-2125Helical
 2177-2197Helical
 2281-2301Helical
 2305-2325Helical
 2330-2350Helical
 2757-2777Helical
 3028-3048Helical
 3062-3082Helical
 3104-3124Helical
 3125-3145Helical
 3559-3579Helical
 3593-3613Helical
 3618-3638Helical
 3664-3684Helical
 3691-3711Helical
 3740-3760Helical
 3765-3785Helical
 1672-1709C4-type
 4311-4327
 4354-4367
 193-194Cleavage
 853-854Cleavage; by PL-PRO
 2740-2741Cleavage; by PL-PRO
 3247-3248Cleavage; by 3CL-PRO
 3553-3554Cleavage; by 3CL-PRO
 3845-3846Cleavage; by 3CL-PRO
 3928-3929Cleavage; by 3CL-PRO
 4127-4128Cleavage; by 3CL-PRO
 4237-4238Cleavage; by 3CL-PRO
 4377-4378Cleavage; by 3CL-PRO
 23-163Non-structural protein NSP1, betacoronavirus
IPR021590PF11501
 194-443Nonstructural protein 2, N-terminal domain, coronavirus
IPR043615PF19211
 680-853Non-structural protein 2, C-terminal domain, coronavirus
IPR043613PF19212
 1143-1243Macro domain
IPR002589PF01661
 1293-1386Non-structural protein NSP3, SUD-M domain, betacoronavirus
IPR024375PF11633
 1484-1796Peptidase C16, coronavirus
IPR013016PF08715
 1850-1951Non-structural protein NSP3, nucleic acid-binding (NAR) domain, betacoronavirus
IPR032592PF16251
 2228-2722Coronavirus replicase NSP3, C-terminal
IPR043611PF19218
 2771-3126Coronavirus replicase NSP4, N-terminal
IPR043612PF19217
 3155-3245Non-structural protein NSP4, C-terminal, coronavirus
IPR032505PF16348
 3276-3566Peptidase C30, coronavirus
IPR008740PF05409
 3582-3845Non-structural protein 6, coronavirus
IPR043610PF19213
 3846-3928Non-structural protein NSP7, coronavirus
IPR014828PF08716
 3931-4126Non-structural protein NSP8, coronavirus-like
IPR014829PF08717
 4128-4237Non-structural protein NSP9, coronavirus
IPR014822PF08710
 4246-4368RNA synthesis protein NSP10, coronavirus
IPR018995PF09401

Sequence Alignments

Papain-like proteinase 854-2740; PRO_0000422456

DescriptionOligo-stateLigandsStructureRange
Crystal structure of MERS Coronavirus papain like proteasemonomer ZN;4r3d 1483-1806
Assess
Crystal structure of the macro domain in Middle-East Respiratory Syndrome Coronavirusmonomer 5hih 1109-1274
Assess
Crystal structure of MERS-CoV macro domain in complex with ADP-ribosemonomer APR;SO4;GOL;5dus 1110-1273
Assess
Oligo-stateLigandsQMEANTemplateRangeSeq id (%)
monomer ZN;-4.714ypt.1.A1367-1796
28.13
Assess

3C-like proteinase 3248-3553; PRO_0000422458

DescriptionOligo-stateLigandsStructureRange
1.55 A resolution structure of MERS 3CL protease in complex with inhibitor GC813homo-2-mer PG4;MG;AW4;B3G;5wkk 3248-3551
Assess
1.85 A resolution structure of MERS 3CL protease in complex with piperidine-based peptidomimetic in…homo-2-mer AVY;B3J;5wkl 3248-3551
Assess
2.25 A resolution structure of MERS 3CL protease in complex with piperidine-based peptidomimetic in…homo-2-mer N02;B6Y;5wkm 3248-3551
Assess
2.05 A resolution structure of MERS 3CL protease in complex with inhibitor GC376homo-2-mer CA;B1S;K36;5wkj 3248-3550
Assess