K9N638 (R1A_MERS1) Middle East respiratory syndrome-related coronavirus (isolate UnitedKingdom/H123990006/2012) (MERS-CoV) (Betacoronavirus England 1)
Replicase polyprotein 1a UniProtKBInterProInteractive Modelling
4391 aa; Sequence (Fasta) Identical sequences: Human betacoronavirus 2c England-Qatar/2012: M1RUQ1
Molecule Processing
| Host translation inhibitor nsp1 | |
| Non-structural protein 2 | |
| Papain-like proteinase | |
| Non-structural protein 4 | |
| 3C-like proteinase | |
| Non-structural protein 6 | |
| Non-structural protein 7 | |
| Non-structural protein 8 | |
| Non-structural protein 9 | |
| Non-structural protein 10 | |
| Non-structural protein 11 |
It is possible new templates exist for this target since these models were created.
Sequence Features
| 1592 | For PL-PRO activity | ||
| 1759 | For PL-PRO activity | ||
| 3288 | For 3CL-PRO activity | ||
| 3395 | For 3CL-PRO activity | ||
| 4311 | Zinc | ||
| 4314 | Zinc | ||
| 4320 | Zinc | ||
| 4327 | Zinc | ||
| 4354 | Zinc | ||
| 4357 | Zinc | ||
| 4365 | Zinc | ||
| 2105-2125 | Helical | ||
| 2177-2197 | Helical | ||
| 2281-2301 | Helical | ||
| 2305-2325 | Helical | ||
| 2330-2350 | Helical | ||
| 2757-2777 | Helical | ||
| 3028-3048 | Helical | ||
| 3062-3082 | Helical | ||
| 3104-3124 | Helical | ||
| 3125-3145 | Helical | ||
| 3559-3579 | Helical | ||
| 3593-3613 | Helical | ||
| 3618-3638 | Helical | ||
| 3664-3684 | Helical | ||
| 3691-3711 | Helical | ||
| 3740-3760 | Helical | ||
| 3765-3785 | Helical | ||
| 1672-1709 | C4-type | ||
| 4311-4327 | |||
| 4354-4367 | |||
| 193-194 | Cleavage | ||
| 853-854 | Cleavage; by PL-PRO | ||
| 2740-2741 | Cleavage; by PL-PRO | ||
| 3247-3248 | Cleavage; by 3CL-PRO | ||
| 3553-3554 | Cleavage; by 3CL-PRO | ||
| 3845-3846 | Cleavage; by 3CL-PRO | ||
| 3928-3929 | Cleavage; by 3CL-PRO | ||
| 4127-4128 | Cleavage; by 3CL-PRO | ||
| 4237-4238 | Cleavage; by 3CL-PRO | ||
| 4377-4378 | Cleavage; by 3CL-PRO | ||
| 23-163 | Non-structural protein NSP1, betacoronavirus IPR021590PF11501 | ||
| 194-443 | Nonstructural protein 2, N-terminal domain, coronavirus IPR043615PF19211 | ||
| 680-853 | Non-structural protein 2, C-terminal domain, coronavirus IPR043613PF19212 | ||
| 1143-1243 | Macro domain IPR002589PF01661 | ||
| 1293-1386 | Non-structural protein NSP3, SUD-M domain, betacoronavirus IPR024375PF11633 | ||
| 1484-1796 | Peptidase C16, coronavirus IPR013016PF08715 | ||
| 1850-1951 | Non-structural protein NSP3, nucleic acid-binding (NAR) domain, betacoronavirus IPR032592PF16251 | ||
| 2228-2722 | Coronavirus replicase NSP3, C-terminal IPR043611PF19218 | ||
| 2771-3126 | Coronavirus replicase NSP4, N-terminal IPR043612PF19217 | ||
| 3155-3245 | Non-structural protein NSP4, C-terminal, coronavirus IPR032505PF16348 | ||
| 3276-3566 | Peptidase C30, coronavirus IPR008740PF05409 | ||
| 3582-3845 | Non-structural protein 6, coronavirus IPR043610PF19213 | ||
| 3846-3928 | Non-structural protein NSP7, coronavirus IPR014828PF08716 | ||
| 3931-4126 | Non-structural protein NSP8, coronavirus-like IPR014829PF08717 | ||
| 4128-4237 | Non-structural protein NSP9, coronavirus IPR014822PF08710 | ||
| 4246-4368 | RNA synthesis protein NSP10, coronavirus IPR018995PF09401 |
Sequence Alignments
Papain-like proteinase 854-2740; PRO_0000422456
| Description | Oligo-state | Ligands | Structure | Range | |
|---|---|---|---|---|---|
| Crystal structure of MERS Coronavirus papain like protease | monomer | 1×ZN; | 4r3d | ||
| Assess | |||||
| Crystal structure of the macro domain in Middle-East Respiratory Syndrome Coronavirus | monomer | 5hih | |||
| Assess | |||||
| Crystal structure of MERS-CoV macro domain in complex with ADP-ribose | monomer | 1×APR; 3×SO4; 2×GOL; | 5dus | ||
| Assess | |||||
| Oligo-state | Ligands | QMEAN | Template | Range | Seq id (%) |
|---|---|---|---|---|---|
| monomer | 1×ZN; | -4.71 | 4ypt.1.A | 28.13 | |
| Assess | |||||
3C-like proteinase 3248-3553; PRO_0000422458
| Description | Oligo-state | Ligands | Structure | Range | |
|---|---|---|---|---|---|
| 1.55 A resolution structure of MERS 3CL protease in complex with inhibitor GC813 | homo-2-mer | 2×PG4; 2×MG; 2×AW4; 2×B3G; | 5wkk | ||
| Assess | |||||
| 1.85 A resolution structure of MERS 3CL protease in complex with piperidine-based peptidomimetic in… | homo-2-mer | 2×AVY; 2×B3J; | 5wkl | ||
| Assess | |||||
| 2.25 A resolution structure of MERS 3CL protease in complex with piperidine-based peptidomimetic in… | homo-2-mer | 2×N02; 2×B6Y; | 5wkm | ||
| Assess | |||||
| 2.05 A resolution structure of MERS 3CL protease in complex with inhibitor GC376 | homo-2-mer | 4×CA; 2×B1S; 2×K36; | 5wkj | ||
| Assess | |||||