O75164 (KDM4A_HUMAN) Homo sapiens (Human)

Lysine-specific demethylase 4A UniProtKBInterProInteractive Modelling

1064 aa; Sequence (Fasta) ; (Isoform 2; )

Sequence Features

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 188Iron; catalytic
 190Iron; catalytic
 234Zinc
 240Zinc; via tele nitrogen
 276Iron; catalytic
 306Zinc
 308Zinc
 482A -> E (in dbSNP:rs586339) VAR_023775 dbSNP
 877V -> G (in dbSNP:rs12759032) VAR_031217 dbSNP
 709-767PHD-type 1
 772-805C2HC pre-PHD-type
 828-885PHD-type 2
 15-49JmjN domain
IPR003349PF02375
 175-291JmjC domain
IPR003347PF02373
 902-936Lysine-specific demethylase 4, Tudor domain
IPR040477PF18104
 960-994Lysine-specific demethylase 4, Tudor domain
IPR040477PF18104

Sequence Alignments

Experimental structures

DescriptionOligo-stateLigandsStructureRange
JMJD2A COMPLEXED WITH NI(II), NOG AND HISTONE H4(1-15)R3me2s PEPTIDE Heteromer
P62805;
NI;ZN;CL;OGA;GOL;5fwe3-355
Assess
Crystal structure of human KDM4A complexed with co-substrate analog NOG and histone H3 peptide with… Heteromer
P68431;
ZN;OGA;6hgt5-354
Assess
Crystal structure of JMJD2A complexed with histone H3 peptide dimethylated at Lys9 Heteromer
P68431;
NI;ZN;CL;OGA;2ox07-355
Assess
JMJD2A COMPLEXED WITH R-2-HYDROXYGLUTARATE AND HISTONE H3K36me3 PEPTIDE (30-41) Heteromer
Q16695;
NI;ZN;GOL;2HG;2ybp7-355
Assess
Crystal structure of JMJD2A complexed with histone H3 peptide monomethylated at Lys9 Heteromer
P68431;
NI;ZN;OGA;2ot77-355
Assess
JMJD2A COMPLEXED WITH NI(II), NOG AND HISTONE H3K27me3 PEPTIDE (16-35) Heteromer
Q16695;
NI;ZN;CL;OGA;GOL;4v2w7-354
Assess
Crystal structure of JMJD2A complexed with histone H3 peptide trimethylated at Lys9 Heteromer
P68431;
NI;ZN;OGA;2oq68-355
Assess
JMJD2A COMPLEXED WITH S-2-HYDROXYGLUTARATE AND HISTONE H3K36me3 PEPTIDE (30-41) Heteromer
Q16695;
NI;ZN;GOL;S2G;2ybs8-355
Assess
The complex structure of JMJD2A and trimethylated H3K36 peptide Heteromer
ZN;FE2;OGA;OXY;2p5b2-348
Assess
JMJD2A/ KDM4A COMPLEXED WITH NI(II), NOG AND Histone H1.4(18-32)K26me3 peptide (15-mer) Heteromer
P10412;
NI;ZN;CL;OGA;GOL;6h8p9-354
Assess
Histone Lysine demethylase JMJD2A in complex with T11C peptide substrate crosslinked to N-oxalyl-D-… Heteromer
P68431;
NI;ZN;08P;3u4s8-352
Assess
JMJD2A tandem tudor domains in complex with a trimethylated histone H4-K20 peptide Heteromer
P62805;
2qqs897-1005
Assess
Crystal structure of double tudor domain of human lysine demethylase KDM4A complexed with histone H… Heteromer
P68431;
5d6y898-1005
Assess
JMJD2A/ KDM4A COMPLEXED WITH NI(II) AND Macrocyclic PEPTIDE Inhibitor CP2 (13-mer)homo-4-mer NI;ZN;CL;GOL;PPI;5ly15-355
Assess
JMJD2A/ KDM4A COMPLEXED WITH NI(II), NOG AND Macrocyclic PEPTIDE Inhibitor CP2_R6Kme3 (13-mer)homo-4-mer NI;ZN;OGA;GOL;CL;5ly25-354
Assess
Crystal structure of JMJD2A complexed with bipyridyl inhibitormonomer NI;ZN;KC6;CL;NA;3pdq3-355
Assess
Crystal Structure of KDM4A with compound YP-02-145monomer ZN;NI;EDO;CIT;GOL;6g5x3-353
Assess
Crystal structure of human JMJD2A in complex with compound 30monomer MN;KCH;ZN;CL;5a7q3-353
Assess
Crystal structure of human JMJD2A in complex with pyruvatemonomer NI;PYR;DMS;EDO;ZN;5fyi4-354
Assess
Crystal structure of human JMJD2A in complex with compound 42monomer SO4;7WH; 11×EDO;ZN;MN;DMS;5a7o4-354
Assess
Crystal Structure of JMJD2A Complexed with Inhibitormonomer NI;ZN;HQ2;GOL;3rvh3-353
Assess
Crystal structure of human JMJD2A in complex with compound 40monomer SO4;MN;9CJ;ZN;EDO;5a804-354
Assess
Crystal structure of human JMJD2A in complex with fumaratemonomer ZN;FUM;SO4;MN;EDO;5fyh4-354
Assess
Crystal structure of human JMJD2A in complex with compound 43monomer MN;ZN;EDO;SO4;VAO;5a7n4-354
Assess
Crystal Structure of KDM4A with Compound 14monomer NI;ZN;QC1;6cg15-354
Assess
Crystal structure of human KDM4A in complex with compound 58monomer ZN;N5J; 12×EDO;DMS;5f375-354
Assess
Crystal structure of human KDM4A in complex with compound 54jmonomer ZN;5UJ;DMS;5f3i6-355
Assess
Crystal Structure of JMJD2A complexed with inhibitor Pyridine-2,4- dicarboxylic acidmonomer NI;ZN;PD2;2vd76-355
Assess
Crystal structure of human JMJD2A in complex with compound 36monomer SO4;MN;ZN;EDO;6Z1;DMS;5a7p4-353
Assess
Crystal Structure of JMJD2A Complexed with Inhibitormonomer NI;ZN;CL;0WS;4gd45-354
Assess
Crystal structure of human JMJD2A in complex with D-threo-isocitratemonomer NI;ZN;N81;DMS;EDO;5fy84-353
Assess
Crystal Structure of Human KDM4 with Small Molecule Inhibitor QC5714monomer NI;ZN;9FJ;5vmp5-354
Assess
Crystal Structure of KDM4A with compound YP-03-038monomer ZN;NI;EDO;CIT;6g5w4-352
Assess
Crystal structure of human KDM4A in complex with compound 17fmonomer ZN;FQB;DMS;GOL;6h4r6-354
Assess
Crystal structure of human KDM4A in complex with compound 34gmonomer ZN;FQN;CL;DMS;6h4v6-354
Assess
Crystal structure of human KDM4A in complex with compound 54amonomer ZN;5UO;DMS;5f3e6-354
Assess
Crystal structure of human KDM4A in complex with compound 16amonomer ZN;FQ5;DMS;CL;6h4p6-354
Assess
Crystal structure of human JMJD2A in complex with compound 14amonomer EDO;SO4;NI;ZN;LEL;4ura4-352
Assess
Crystal structure of human KDM4A in complex with compound 17bmonomer ZN;FNQ;DMS;GOL;CL;6h4x6-354
Assess
Crystal structure of the catalytic core domain of jmjd2amonomer ZN;FE2;2gp32-350
Assess
JMJD2A COMPLEXED WITH R-2-HYDROXYGLUTARATEmonomer NI;ZN;CL;2HG;2ybk7-355
Assess
Crystal Structure of human JMJD2A complexed with KDOOA011340monomer NI;ZN;SO4;5V1;5f5i4-352
Assess
JMJD2A COMPLEXED WITH NI(II), NOG AND HISTONE H3K27me3 PEPTIDE (25-29) ARK(me3)SAmonomer OGA;NI;ZN;4v2v7-354
Assess
JMJD2A in complex with Ni(II) and alpha-Ketoglutaratemonomer NI;AKG;ZN;5tvr6-353
Assess
JMJD2A Complexed with Daminozidemonomer NI;ZN;CL;DZA;4ai98-355
Assess
Crystal Structure of KDM4A with Compound 8monomer NI;ZN;QC2;6cg27-354
Assess
Crystal structure of human KDM4A in complex with compound 19amonomer ZN;FOW;CL;6h4t7-354
Assess
JMJD2A COMPLEXED WITH 8-HYDROXYQUINOLINE-4-CARBOXYLIC ACIDmonomer NI;ZN;CL;8HQ;GOL;4bis8-355
Assess
JMJD2A in complex with Ni(II)monomer NI;ZN;5tvs6-353
Assess
The complex structure of JMJD2A and monomethylated H3K36 peptidemonomer ZN;FE2;OGA;2pxj2-348
Assess
The crystal structure of JMJD2A complexed with Ni and N-oxalylglycinemonomer NI;ZN;OGA;2oq78-354
Assess
Crystal structure of human KDM4A in complex with compound 18amonomer ZN;FQH;GOL;CL;6h4o8-354
Assess
Crystal structure of catalytic core domain of jmjd2A complexed with alpha-Ketoglutaratemonomer ZN;FE2;AKG;2gp52-348
Assess
Crystal structure of JMJ2D2A in ternary complex with histone H3-K36me2 and succinatemonomer NI;ZN;SIN;2q8d1-347
Assess
Crystal structure of JMJD2A complexed with histone H3 peptide trimethylated at Lys36monomer NI;ZN;OGA;2os28-354
Assess
Crystal structure of human KDM4A in complex with compound 34amonomer ZN;FO2;GOL;DMS;6h4q7-353
Assess
Crystal structure of human KDM4A in complex with compound 16mmonomer ZN;FQE;DMS;6h4s8-354
Assess
Crystal structure of human KDM4A in complex with compound 53amonomer ZN;5UL;DMS;5f3g8-354
Assess
Crystal structure of JMJD2A complexed with 5-carboxy-8-hydroxyquinolinemonomer NI;ZN;8XQ;3njy8-354
Assess
Crystal structure of human KDM4A in complex with compound 19dmonomer ZN;FQQ;DMS;CL;6h4w9-355
Assess
Crystal structure of human KDM4A in complex with compound 15monomer ZN;5TZ;EDO;DMS;5f2s9-354
Assess
Crystal structure of human KDM4A in complex with compound 34bmonomer ZN;FO2;DMS;GOL;CL;6h4u8-353
Assess
Crystal structure of human JMJD2A in complex with succinatemonomer NI;ZN;FUM;EDO;SO4;5fyc8-353
Assess
Crystal structure of human JMJD2A in complex with compound 35monomer SO4;35M;MN;ZN;EDO;DMS;5a7w8-353
Assess
Crystal structure of human KDM4A in complex with compound 17emonomer ZN;FO8;CL;6h4y8-353
Assess
Crystal structure of human KDM4A in complex with compound 16monomer ZN;5UP;EDO;DMS;5f2w9-354
Assess
Crystal structure of human KDM4A in complex with compound 37monomer ZN;5UB;DMS;5f399-354
Assess
Crystal structure of JMJD2A in ternary complex with an histone H3K9me3 peptide and 2-oxoglutaratemonomer NI;ZN;AKG;2q8c3-347
Assess
Crystal structure of human KDM4A in complex with compound 52dmonomer ZN;5U8;DMS;GOL;5f3c10-354
Assess
Crystal Structure of KDM4 with the Small Molecule Inhibitor QC6352monomer NI;ZN;9DJ;5vgi9-353
Assess
Crystal structure of human JMJD2A in complex with compound 44monomer MN;ZN;EDO;S2X;DMS;5a7s10-354
Assess
Crystal structure of human JMJD2A in complex with compound KDOAM20Amonomer MN;MMK;ZN;NI;5fpv11-355
Assess
inhibitors of JumonjiC domain-containing histone demethylasesmonomer 5YQ;FE2;SO4;ZN;CL;5anq10-353
Assess
Specificity and Mechanism of JMJD2A, a Trimethyllysine-Specific Histone Demethylasemonomer NI;ZN;OGA;2q8e3-346
Assess
Crystal structure of human KDM4A in complex with compound 40monomer ZN;5V7;DMS;EDO;GOL;5f3211-354
Assess
JMJD2A hybrid tudor domainsmonomer SO4;2qqr897-1011
Assess
Crystal structure of double tudor domain of human lysine demethylase KDM4Amonomer SRT;5d6w897-1011
Assess
Crystal structure of double tudor domain of human lysine demethylase KDM4Amonomer SO4;5d6x897-1011
Assess
Double tudor domain structuremonomer SO4;2gf7897-1011
Assess
double tudor domain complex structuremonomer 2gfa895-1008
Assess
The Crystal Structure of human JMJD2A Tudor domain from Biortusmonomer SO4;7d4a898-1011
Assess
Crystal structure of KDM4A tandem TUDOR domain in complex with a tri-methyl lysine competitive inhi…monomer 92Y;5var897-1004
Assess

Homology models

Oligo-stateQMEANTemplateRangeSeq id (%)Ligands
monomer 0.02 2xdp.1.A896-1014
65.83
Assess
monomer -3.27 6u04.1.A732-888
39.35ZN;
Assess
monomer -2.74 5zcj.1.C900-1020
24.11
Assess

Homology models built on isoform sequence

IsoformOligo-stateLigandsQMEANTemplateRangeSeq id (%)
Isoform 2monomerSRT;0.985d6w.1.A314-428
100.00
Assess
Isoform 2monomer0.112xdp.1.A316-431
67.52
Assess
Isoform 2monomerZN;-4.015erc.1.A148-304
39.87
Assess
Isoform 2monomer-2.725zcj.1.C317-437
24.11
Assess