O75164 (KDM4A_HUMAN) Homo sapiens (Human)

Lysine-specific demethylase 4A UniProtKBInterProInteractive Modelling

1064 aa; Sequence (Fasta) ; (Isoform 2; )

Sequence Features

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 188Iron; catalytic
 190Iron; catalytic
 234Zinc
 240Zinc; via tele nitrogen
 276Iron; catalytic
 306Zinc
 308Zinc
 482A -> E (in dbSNP:rs586339) VAR_023775 dbSNP
 877V -> G (in dbSNP:rs12759032) VAR_031217 dbSNP
 709-767PHD-type 1
 772-805C2HC pre-PHD-type
 828-885PHD-type 2
 15-49JmjN domain
IPR003349PF02375
 175-291JmjC domain
IPR003347PF02373
 902-936Lysine-specific demethylase 4, Tudor domain
IPR040477PF18104
 960-994Lysine-specific demethylase 4, Tudor domain
IPR040477PF18104

Sequence Alignments

Experimental structures

DescriptionOligo-stateLigandsStructureRange
JMJD2A COMPLEXED WITH NI(II), NOG AND HISTONE H4(1-15)R3me2s PEPTIDE Heteromer
P62805; 		1×NI; 1×ZN; 1×CL; 1×OGA; 1×GOL;5fwe3-355
Assess
Crystal structure of human KDM4A complexed with co-substrate analog NOG and histone H3 peptide with… Heteromer
P68431; 		2×ZN; 1×OGA;6hgt5-354
Assess
Crystal structure of JMJD2A complexed with histone H3 peptide dimethylated at Lys9 Heteromer
P68431; 		1×NI; 1×ZN; 1×CL; 1×OGA;2ox07-355
Assess
JMJD2A COMPLEXED WITH R-2-HYDROXYGLUTARATE AND HISTONE H3K36me3 PEPTIDE (30-41) Heteromer
Q16695; 		1×NI; 1×ZN; 1×GOL; 1×2HG;2ybp7-355
Assess
Crystal structure of JMJD2A complexed with histone H3 peptide monomethylated at Lys9 Heteromer
P68431; 		1×NI; 1×ZN; 1×OGA;2ot77-355
Assess
JMJD2A COMPLEXED WITH NI(II), NOG AND HISTONE H3K27me3 PEPTIDE (16-35) Heteromer
Q16695; 		1×NI; 1×ZN; 1×CL; 1×OGA; 1×GOL;4v2w7-354
Assess
Crystal structure of JMJD2A complexed with histone H3 peptide trimethylated at Lys9 Heteromer
P68431; 		1×NI; 1×ZN; 1×OGA;2oq68-355
Assess
JMJD2A COMPLEXED WITH S-2-HYDROXYGLUTARATE AND HISTONE H3K36me3 PEPTIDE (30-41) Heteromer
Q16695; 		1×NI; 1×ZN; 1×GOL; 1×S2G;2ybs8-355
Assess
The complex structure of JMJD2A and trimethylated H3K36 peptide Heteromer
1×ZN; 1×FE2; 1×OGA; 2×OXY;2p5b2-348
Assess
JMJD2A/ KDM4A COMPLEXED WITH NI(II), NOG AND Histone H1.4(18-32)K26me3 peptide (15-mer) Heteromer
P10412; 		1×NI; 1×ZN; 1×CL; 1×OGA; 3×GOL;6h8p9-354
Assess
Histone Lysine demethylase JMJD2A in complex with T11C peptide substrate crosslinked to N-oxalyl-D-… Heteromer
P68431; 		1×NI; 1×ZN; 1×08P;3u4s8-352
Assess
JMJD2A tandem tudor domains in complex with a trimethylated histone H4-K20 peptide Heteromer
P62805; 		2qqs897-1005
Assess
Crystal structure of double tudor domain of human lysine demethylase KDM4A complexed with histone H… Heteromer
P68431; 		5d6y898-1005
Assess
JMJD2A/ KDM4A COMPLEXED WITH NI(II) AND Macrocyclic PEPTIDE Inhibitor CP2 (13-mer)homo-4-mer 4×NI; 4×ZN; 3×CL; 5×GOL; 3×PPI;5ly15-355
Assess
JMJD2A/ KDM4A COMPLEXED WITH NI(II), NOG AND Macrocyclic PEPTIDE Inhibitor CP2_R6Kme3 (13-mer)homo-4-mer 4×NI; 4×ZN; 4×OGA; 5×GOL; 5×CL;5ly25-354
Assess
Crystal structure of JMJD2A complexed with bipyridyl inhibitormonomer 1×NI; 1×ZN; 1×KC6; 4×CL; 1×NA;3pdq3-355
Assess
Crystal Structure of KDM4A with compound YP-02-145monomer 1×ZN; 3×NI; 2×EDO; 2×CIT; 1×GOL;6g5x3-353
Assess
Crystal structure of human JMJD2A in complex with compound 30monomer 2×MN; 1×KCH; 1×ZN; 2×CL;5a7q3-353
Assess
Crystal structure of human JMJD2A in complex with pyruvatemonomer 1×NI; 2×PYR; 1×DMS; 9×EDO; 1×ZN;5fyi4-354
Assess
Crystal structure of human JMJD2A in complex with compound 42monomer 1×SO4; 1×7WH; 11×EDO; 1×ZN; 1×MN; 1×DMS;5a7o4-354
Assess
Crystal Structure of JMJD2A Complexed with Inhibitormonomer 1×NI; 1×ZN; 1×HQ2; 1×GOL;3rvh3-353
Assess
Crystal structure of human JMJD2A in complex with compound 40monomer 1×SO4; 1×MN; 1×9CJ; 1×ZN; 5×EDO;5a804-354
Assess
Crystal structure of human JMJD2A in complex with fumaratemonomer 1×ZN; 1×FUM; 1×SO4; 1×MN; 1×EDO;5fyh4-354
Assess
Crystal structure of human JMJD2A in complex with compound 43monomer 1×MN; 1×ZN; 5×EDO; 1×SO4; 1×VAO;5a7n4-354
Assess
Crystal Structure of KDM4A with Compound 14monomer 1×NI; 1×ZN; 1×QC1;6cg15-354
Assess
Crystal structure of human KDM4A in complex with compound 58monomer 2×ZN; 1×N5J; 12×EDO; 2×DMS;5f375-354
Assess
Crystal structure of human KDM4A in complex with compound 54jmonomer 2×ZN; 1×5UJ; 1×DMS;5f3i6-355
Assess
Crystal Structure of JMJD2A complexed with inhibitor Pyridine-2,4- dicarboxylic acidmonomer 1×NI; 1×ZN; 1×PD2;2vd76-355
Assess
Crystal structure of human JMJD2A in complex with compound 36monomer 1×SO4; 1×MN; 1×ZN; 4×EDO; 1×6Z1; 1×DMS;5a7p4-353
Assess
Crystal Structure of JMJD2A Complexed with Inhibitormonomer 1×NI; 1×ZN; 1×CL; 1×0WS;4gd45-354
Assess
Crystal structure of human JMJD2A in complex with D-threo-isocitratemonomer 1×NI; 1×ZN; 1×N81; 1×DMS; 3×EDO;5fy84-353
Assess
Crystal Structure of Human KDM4 with Small Molecule Inhibitor QC5714monomer 1×NI; 1×ZN; 1×9FJ;5vmp5-354
Assess
Crystal Structure of KDM4A with compound YP-03-038monomer 1×ZN; 2×NI; 2×EDO; 2×CIT;6g5w4-352
Assess
Crystal structure of human KDM4A in complex with compound 17fmonomer 2×ZN; 1×FQB; 1×DMS; 1×GOL;6h4r6-354
Assess
Crystal structure of human KDM4A in complex with compound 34gmonomer 2×ZN; 1×FQN; 1×CL; 2×DMS;6h4v6-354
Assess
Crystal structure of human KDM4A in complex with compound 54amonomer 2×ZN; 1×5UO; 1×DMS;5f3e6-354
Assess
Crystal structure of human KDM4A in complex with compound 16amonomer 2×ZN; 1×FQ5; 3×DMS; 1×CL;6h4p6-354
Assess
Crystal structure of human JMJD2A in complex with compound 14amonomer 1×EDO; 1×SO4; 1×NI; 1×ZN; 1×LEL;4ura4-352
Assess
Crystal structure of human KDM4A in complex with compound 17bmonomer 2×ZN; 1×FNQ; 1×DMS; 1×GOL; 1×CL;6h4x6-354
Assess
Crystal structure of the catalytic core domain of jmjd2amonomer 1×ZN; 1×FE2;2gp32-350
Assess
JMJD2A COMPLEXED WITH R-2-HYDROXYGLUTARATEmonomer 1×NI; 1×ZN; 1×CL; 1×2HG;2ybk7-355
Assess
Crystal Structure of human JMJD2A complexed with KDOOA011340monomer 1×NI; 1×ZN; 1×SO4; 1×5V1;5f5i4-352
Assess
JMJD2A COMPLEXED WITH NI(II), NOG AND HISTONE H3K27me3 PEPTIDE (25-29) ARK(me3)SAmonomer 1×OGA; 1×NI; 1×ZN;4v2v7-354
Assess
JMJD2A in complex with Ni(II) and alpha-Ketoglutaratemonomer 1×NI; 1×AKG; 1×ZN;5tvr6-353
Assess
JMJD2A Complexed with Daminozidemonomer 1×NI; 1×ZN; 1×CL; 2×DZA;4ai98-355
Assess
Crystal Structure of KDM4A with Compound 8monomer 1×NI; 1×ZN; 1×QC2;6cg27-354
Assess
Crystal structure of human KDM4A in complex with compound 19amonomer 2×ZN; 1×FOW; 1×CL;6h4t7-354
Assess
JMJD2A COMPLEXED WITH 8-HYDROXYQUINOLINE-4-CARBOXYLIC ACIDmonomer 1×NI; 1×ZN; 1×CL; 1×8HQ; 1×GOL;4bis8-355
Assess
JMJD2A in complex with Ni(II)monomer 1×NI; 1×ZN;5tvs6-353
Assess
The complex structure of JMJD2A and monomethylated H3K36 peptidemonomer 1×ZN; 1×FE2; 1×OGA;2pxj2-348
Assess
The crystal structure of JMJD2A complexed with Ni and N-oxalylglycinemonomer 1×NI; 1×ZN; 1×OGA;2oq78-354
Assess
Crystal structure of human KDM4A in complex with compound 18amonomer 2×ZN; 1×FQH; 1×GOL; 1×CL;6h4o8-354
Assess
Crystal structure of catalytic core domain of jmjd2A complexed with alpha-Ketoglutaratemonomer 1×ZN; 1×FE2; 1×AKG;2gp52-348
Assess
Crystal structure of JMJ2D2A in ternary complex with histone H3-K36me2 and succinatemonomer 1×NI; 1×ZN; 1×SIN;2q8d1-347
Assess
Crystal structure of JMJD2A complexed with histone H3 peptide trimethylated at Lys36monomer 1×NI; 1×ZN; 1×OGA;2os28-354
Assess
Crystal structure of human KDM4A in complex with compound 34amonomer 2×ZN; 1×FO2; 2×GOL; 1×DMS;6h4q7-353
Assess
Crystal structure of human KDM4A in complex with compound 16mmonomer 2×ZN; 1×FQE; 3×DMS;6h4s8-354
Assess
Crystal structure of human KDM4A in complex with compound 53amonomer 2×ZN; 1×5UL; 2×DMS;5f3g8-354
Assess
Crystal structure of JMJD2A complexed with 5-carboxy-8-hydroxyquinolinemonomer 1×NI; 1×ZN; 1×8XQ;3njy8-354
Assess
Crystal structure of human KDM4A in complex with compound 19dmonomer 2×ZN; 1×FQQ; 1×DMS; 1×CL;6h4w9-355
Assess
Crystal structure of human KDM4A in complex with compound 15monomer 2×ZN; 1×5TZ; 7×EDO; 2×DMS;5f2s9-354
Assess
Crystal structure of human KDM4A in complex with compound 34bmonomer 2×ZN; 1×FO2; 1×DMS; 1×GOL; 1×CL;6h4u8-353
Assess
Crystal structure of human JMJD2A in complex with succinatemonomer 1×NI; 1×ZN; 1×FUM; 5×EDO; 1×SO4;5fyc8-353
Assess
Crystal structure of human JMJD2A in complex with compound 35monomer 1×SO4; 1×35M; 1×MN; 1×ZN; 2×EDO; 1×DMS;5a7w8-353
Assess
Crystal structure of human KDM4A in complex with compound 17emonomer 2×ZN; 1×FO8; 1×CL;6h4y8-353
Assess
Crystal structure of human KDM4A in complex with compound 16monomer 2×ZN; 1×5UP; 3×EDO; 1×DMS;5f2w9-354
Assess
Crystal structure of human KDM4A in complex with compound 37monomer 2×ZN; 1×5UB; 4×DMS;5f399-354
Assess
Crystal structure of JMJD2A in ternary complex with an histone H3K9me3 peptide and 2-oxoglutaratemonomer 1×NI; 1×ZN; 1×AKG;2q8c3-347
Assess
Crystal structure of human KDM4A in complex with compound 52dmonomer 2×ZN; 1×5U8; 4×DMS; 1×GOL;5f3c10-354
Assess
Crystal Structure of KDM4 with the Small Molecule Inhibitor QC6352monomer 1×NI; 1×ZN; 1×9DJ;5vgi9-353
Assess
Crystal structure of human JMJD2A in complex with compound 44monomer 1×MN; 1×ZN; 7×EDO; 1×S2X; 1×DMS;5a7s10-354
Assess
Crystal structure of human JMJD2A in complex with compound KDOAM20Amonomer 1×MN; 1×MMK; 1×ZN; 3×NI;5fpv11-355
Assess
inhibitors of JumonjiC domain-containing histone demethylasesmonomer 1×5YQ; 1×FE2; 2×SO4; 1×ZN; 3×CL;5anq10-353
Assess
Specificity and Mechanism of JMJD2A, a Trimethyllysine-Specific Histone Demethylasemonomer 1×NI; 1×ZN; 1×OGA;2q8e3-346
Assess
Crystal structure of human KDM4A in complex with compound 40monomer 2×ZN; 1×5V7; 1×DMS; 1×EDO; 1×GOL;5f3211-354
Assess
JMJD2A hybrid tudor domainsmonomer 3×SO4;2qqr897-1011
Assess
Crystal structure of double tudor domain of human lysine demethylase KDM4Amonomer 1×SRT;5d6w897-1011
Assess
Crystal structure of double tudor domain of human lysine demethylase KDM4Amonomer 2×SO4;5d6x897-1011
Assess
Double tudor domain structuremonomer 1×SO4;2gf7897-1011
Assess
double tudor domain complex structuremonomer 2gfa895-1008
Assess
The Crystal Structure of human JMJD2A Tudor domain from Biortusmonomer 1×SO4;7d4a898-1011
Assess
Crystal structure of KDM4A tandem TUDOR domain in complex with a tri-methyl lysine competitive inhi…monomer 1×92Y;5var897-1004
Assess

Homology models

Oligo-stateQMEANTemplateRangeSeq id (%)Ligands
monomer 0.02 2xdp.1.A896-1014
65.83
Assess
monomer -3.27 6u04.1.A732-888
39.354×ZN;
Assess
monomer -2.74 5zcj.1.C900-1020
24.11
Assess

Homology models built on isoform sequence

IsoformOligo-stateLigandsQMEANTemplateRangeSeq id (%)
Isoform 2monomer1×SRT;0.985d6w.1.A314-428
100.00
Assess
Isoform 2monomer0.112xdp.1.A316-431
67.52
Assess
Isoform 2monomer3×ZN;-4.015erc.1.A148-304
39.87
Assess
Isoform 2monomer-2.725zcj.1.C317-437
24.11
Assess