O39928 (POLG_HCVEV) Hepatitis C virus genotype 5a (isolate EUH1480) (HCV)

Genome polyprotein UniProtKBInterProInteractive Modelling

3014 aa; Sequence (Fasta)

Sequence Features

 953For protease NS2-3 activity; shared with dimeric partner.
 973For protease NS2-3 activity; shared with dimeric partner.
 994For protease NS2-3 activity; shared with dimeric partner.
 1084Charge relay system; for serine protease NS3 activity.
 1108Charge relay system; for serine protease NS3 activity.
 1166Charge relay system; for serine protease NS3 activity.
 1124Zinc.
 1126Zinc.
 1172Zinc.
 1176Zinc.
 2012Zinc.
 2030Zinc.
 2032Zinc.
 2053Zinc.
 169-189Helical.
 359-379Helical.
 727-747Helical.
 759-779Helical.
 784-804Helical.
 815-835Helical.
 883-903Helical.
 930-950Helical.
 1659-1679Helical.
 1807-1827Helical.
 1830-1850Helical.
 1852-1872Helical.
 1883-1903Helical.
 1974-2003
 2994-3014Helical.
 1231-1238ATP.
 177-178Cleavage; by host signal peptidase.
 191-192Cleavage; by host signal peptidase.
 383-384Cleavage; by host signal peptidase.
 747-748Cleavage; by host signal peptidase.
 810-811Cleavage; by host signal peptidase.
 1027-1028Cleavage; by protease NS2-3.
 1658-1659Cleavage; by serine protease NS3.
 1712-1713Cleavage; by serine protease NS3.
 1973-1974Cleavage; by serine protease NS3.
 2423-2424Cleavage; by serine protease NS3.
 2115-2163
 2-114Hepatitis C virus core protein, N-termin al
IPR002522PF01543
 116-190Hepatitis C virus core protein, C-termin al
IPR002521PF01542
 195-382Hepatitis C virus envelope glycoprotein E1
IPR002519PF01539
 386-730Hepatitis C virus non-structural protein E2/NS1
IPR002531PF01560
 812-1006Hepatitis C virus non-structural protein NS2
IPR002518PF01538
 1057-1204Peptidase S29, hepatitis C virus NS3 pro tease
IPR004109PF02907
 1659-1712Hepatitis C virus non-structural protein NS4a
IPR000745PF01006
 1730-1922Hepatitis C virus non-structural protein NS4b
IPR001490PF01001
 1975-1997Hepatitis C virus non-structural 5a prot ein
IPR002868PF01506
 2007-2068NS5A domain 1a
IPR013192PF08300
 2069-2169Hepatitis C virus non-structural 5a, 1B domain
IPR013193PF08301
 2180-2423Hepatitus C virus, NS5a, C-terminal
IPR024350PF12941
 2426-2937RNA dependent RNA polymerase, hepatitis C virus
IPR002166PF00998

Sequence Alignments

Experimental structures

DescriptionOligo-stateLigandsStructureRangeDownloadAssess
Structure of the p7 channel of Hepatitis C virus, genotype 5ahomo-6-mer 2m6x748-810

Homology models

Oligo-stateLigandsQMEANTemplateRangeSeq id (%)ReportDownloadAssess
monomer ZN;-0.301cu1.1.B1027-1658
84.02
monomer -0.464khr.1.A2424-2985
76.67
monomer ZN;-1.064nwl.1.A1017-1208
72.54
monomer -1.144b6f.1.A1030-1691
84.45
monomer NAG;-4.104web.1.A487-646
71.57
monomer -4.504mwf.1.C421-646
79.25