O39929 (POLG_HCVED) Hepatitis C virus genotype 4a (isolate ED43) (HCV)

Genome polyprotein UniProtKBInterProInteractive Modelling

3008 aa; Sequence (Fasta)

Sequence Features

 952For protease NS2-3 activity; shared with dimeric partner.
 972For protease NS2-3 activity; shared with dimeric partner.
 993For protease NS2-3 activity; shared with dimeric partner.
 1083Charge relay system; for serine protease NS3 activity.
 1107Charge relay system; for serine protease NS3 activity.
 1165Charge relay system; for serine protease NS3 activity.
 1123Zinc.
 1125Zinc.
 1171Zinc.
 1175Zinc.
 2029Zinc.
 2031Zinc.
 2052Zinc.
 169-189Helical.
 359-379Helical.
 726-746Helical.
 758-778Helical.
 783-803Helical.
 814-834Helical.
 882-902Helical.
 929-949Helical.
 1658-1678Helical.
 1806-1826Helical.
 1829-1849Helical.
 1851-1871Helical.
 1882-1902Helical.
 1973-2002
 2988-3008Helical.
 1230-1237ATP.
 177-178Cleavage; by host signal peptidase.
 191-192Cleavage; by host signal peptidase.
 383-384Cleavage; by host signal peptidase.
 746-747Cleavage; by host signal peptidase.
 809-810Cleavage; by host signal peptidase.
 1026-1027Cleavage; by protease NS2-3.
 1657-1658Cleavage; by serine protease NS3.
 1711-1712Cleavage; by serine protease NS3.
 1972-1973Cleavage; by serine protease NS3.
 2417-2418Cleavage; by serine protease NS3.
 2114-2162
 2-113Hepatitis C virus core protein, N-termin al
IPR002522PF01543
 116-190Hepatitis C virus core protein, C-termin al
IPR002521PF01542
 194-382Hepatitis C virus envelope glycoprotein E1
IPR002519PF01539
 386-729Hepatitis C virus non-structural protein E2/NS1
IPR002531PF01560
 811-1005Hepatitis C virus non-structural protein NS2
IPR002518PF01538
 1057-1203Peptidase S29, hepatitis C virus NS3 pro tease
IPR004109PF02907
 1658-1711Hepatitis C virus non-structural protein NS4a
IPR000745PF01006
 1729-1921Hepatitis C virus non-structural protein NS4b
IPR001490PF01001
 1975-1996Hepatitis C virus non-structural 5a prot ein
IPR002868PF01506
 2006-2067NS5A domain 1a
IPR013192PF08300
 2068-2168Hepatitis C virus non-structural 5a, 1B domain
IPR013193PF08301
 2179-2417Hepatitus C virus, NS5a, C-terminal
IPR024350PF12941
 2420-2931RNA dependent RNA polymerase, hepatitis C virus
IPR002166PF00998

Sequence Alignments

Homology models

Oligo-stateLigandsQMEANTemplateRangeSeq id (%)ReportDownloadAssess
monomer MG;0.125wdx.1.A1027-1657
78.45
monomer -0.502ax0.1.A2418-2979
77.54
monomer -3.384mwf.1.C421-645
76.30