O41798 (POL_HV19N) Human immunodeficiency virus type 1 group M subtype G (isolate92NG083) (HIV-1)

Gag-Pol polyprotein UniProtKBInterProInteractive Modelling

1435 aa; Sequence (Fasta)

Sequence Features

 513For protease activity; shared with dimeric partner.
 697Magnesium; catalytic; for reverse transcriptase activity.
 772Magnesium; catalytic; for reverse transcriptase activity.
 773Magnesium; catalytic; for reverse transcriptase activity.
 1030Magnesium; catalytic; for RNase H activity.
 1065Magnesium; catalytic; for RNase H activity.
 1085Magnesium; catalytic; for RNase H activity.
 1136Magnesium; catalytic; for RNase H activity.
 1211Magnesium; catalytic; for integrase activity.
 1263Magnesium; catalytic; for integrase activity.
 1299Magnesium; catalytic; for integrase activity.
 988Essential for RT p66/p51 heterodimerization.
 1001Essential for RT p66/p51 heterodimerization.
 391-408CCHC-type 1.
 412-429CCHC-type 2.
 1150-1191Integrase-type.
 1370-1417Integrase-type.
 131-132Cleavage; by viral protease.
 220-221Cis/trans isomerization of proline peptide bond; by human PPIA/CYPA.
 362-363Cleavage; by viral protease.
 378-379Cleavage; by viral protease.
 433-434Cleavage; by viral protease.
 441-442Cleavage; by viral protease.
 488-489Cleavage; by viral protease.
 587-588Cleavage; by viral protease.
 1026-1027Cleavage; by viral protease; partial.
 1147-1148Cleavage; by viral protease.
 2-131Immunodeficiency lentiviral matrix, N-terminal
IPR000071PF00540
 150-362Retroviral nucleocapsid protein Gag
IPR000721PF00607
 391-407Zinc finger, CCHC-type
IPR001878PF00098
 413-429Zinc finger, CCHC-type
IPR001878PF00098
 494-585Retropepsins
IPR018061PF00077
 650-819Reverse transcriptase domain
IPR000477PF00078
 829-890Reverse transcriptase thumb
IPR010661PF06817
 905-1006Reverse transcriptase connection
IPR010659PF06815
 1025-1143Ribonuclease H domain
IPR002156PF00075
 1155-1191Integrase, N-terminal zinc-binding domain
IPR003308PF02022
 1206-1306Integrase, catalytic core
IPR001584PF00665
 1368-1414Integrase, C-terminal, retroviral
IPR001037PF00552

Sequence Alignments

Homology models

Oligo-stateLigandsQMEANTemplateRangeSeq id (%)ReportDownloadAssess
monomer -0.114xfx.1.A132-352
91.34
monomer ZN;-0.895u1c.1.A1148-1416
89.80
monomer MN;-0.953nbp.1.A588-1144
88.77
monomer -0.972m8n.1.A132-352
91.34
monomer -1.975u1c.1.B1203-1416
89.80
monomer -2.362jle.1.B590-1016
88.87
monomer -2.931l6n.1.A2-282
81.91
monomer CPS;-3.471ex4.1.A1203-1417
87.76