O92530 (POLG_HCVVN) Hepatitis C virus genotype 6d (isolate VN235) (HCV)

Genome polyprotein UniProtKBInterProInteractive Modelling

3013 aa; Sequence (Fasta)

Sequence Features

 950For protease NS2-3 activity; shared with dimeric partner.
 970For protease NS2-3 activity; shared with dimeric partner.
 991For protease NS2-3 activity; shared with dimeric partner.
 1081Charge relay system; for serine protease NS3 activity.
 1105Charge relay system; for serine protease NS3 activity.
 1163Charge relay system; for serine protease NS3 activity.
 1121Zinc.
 1123Zinc.
 1169Zinc.
 1173Zinc.
 2009Zinc.
 2027Zinc.
 2029Zinc.
 2050Zinc.
 169-189Helical.
 359-379Helical.
 724-744Helical.
 756-776Helical.
 781-801Helical.
 812-832Helical.
 880-900Helical.
 927-947Helical.
 1656-1676Helical.
 1804-1824Helical.
 1827-1847Helical.
 1849-1869Helical.
 1880-1900Helical.
 1971-2000
 2993-3013Helical.
 1228-1235ATP.
 177-178Cleavage; by host signal peptidase.
 191-192Cleavage; by host signal peptidase.
 383-384Cleavage; by host signal peptidase.
 744-745Cleavage; by host signal peptidase.
 807-808Cleavage; by host signal peptidase.
 1024-1025Cleavage; by protease NS2-3.
 1655-1656Cleavage; by serine protease NS3.
 1709-1710Cleavage; by serine protease NS3.
 1970-1971Cleavage; by serine protease NS3.
 2422-2423Cleavage; by serine protease NS3.
 2112-2160
 2-115Hepatitis C virus core protein, N-termin al
IPR002522PF01543
 116-190Hepatitis C virus core protein, C-termin al
IPR002521PF01542
 196-382Hepatitis C virus envelope glycoprotein E1
IPR002519PF01539
 387-727Hepatitis C virus non-structural protein E2/NS1
IPR002531PF01560
 809-1003Hepatitis C virus non-structural protein NS2
IPR002518PF01538
 1054-1201Peptidase S29, hepatitis C virus NS3 pro tease
IPR004109PF02907
 1292-1353DEAD box, Flavivirus
IPR011492PF07652
 1656-1709Hepatitis C virus non-structural protein NS4a
IPR000745PF01006
 1727-1919Hepatitis C virus non-structural protein NS4b
IPR001490PF01001
 1973-1994Hepatitis C virus non-structural 5a prot ein
IPR002868PF01506
 2004-2065NS5A domain 1a
IPR013192PF08300
 2066-2166Hepatitis C virus non-structural 5a, 1B domain
IPR013193PF08301
 2178-2422Hepatitus C virus, NS5a, C-terminal
IPR024350PF12941
 2425-2936RNA dependent RNA polymerase, hepatitis C virus
IPR002166PF00998

Sequence Alignments

Homology models

Oligo-stateLigandsQMEANTemplateRangeSeq id (%)ReportDownloadAssess
monomer ZN;-0.161cu1.1.A1024-1655
84.81
monomer -0.822ax0.1.A2423-2984
78.42
monomer -1.124b6f.1.A1027-1689
84.78
monomer ZN;-1.514nwl.1.A1014-1205
71.50
monomer -3.594web.1.A487-643
73.71
monomer -3.854mwf.1.C421-643
76.08