P00579 | SWISS-MODEL Repository

P00579 (RPOD_ECOLI) Escherichia coli (strain K12)

RNA polymerase sigma factor RpoD UniProtKB InterPro STRING Interactive Modelling

613 aa; Sequence (Fasta) ; 1 identical sequence: Escherichia coli: Q0P6L9

It is possible new templates exist for this target since these models were created.

Available Structures

107 Experimental Structures

Description	PDB ID	Oligo-state	Range	Ligands
Crystal Structure Analysis of the E.coli holoenzyme	4lk1 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer	5-612	1×MG; 2×ZN;
Assess
Crystal structure of Escherichia coli RNA polymerase in complex with CBRP18	4zh4 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P0A7Z4; P0A800; P0A8T7; P0A8V2;	5-612	1×4OE; 1×MG; 2×ZN;
Assess
Crystal structure of Escherichia coli RNA polymerase in complex with CBRH16-Br	4zh3 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P0A7Z4; P0A800; P0A8T7; P0A8V2;	5-612	1×MG; 2×ZN; 1×4OD;
Assess
Crystal structure of Escherichia coli RNA polymerase in complex with CBR703	4zh2 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P0A7Z4; P0A800; P0A8T7; P0A8V2;	5-612	1×4OB; 1×MG; 2×ZN;
Assess
Crystal Structure Analysis of the E.coli holoenzyme/Gp2 complex	4llg SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P03704;	6-612	1×MG; 2×ZN;
Assess
Escherichia coli RNA polymerase promoter unwinding intermediate (TRPi2) with TraR and rpsT P2 promo…	6psu SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P0A7Z4; P0A800; P0A8T7; P0A8V2; P41065;	7-613	3×ZN; 4×1N7; 1×MG;
Assess
Cryo-EM structure of Escherichia coli RNAP polymerase bound with TraR in conformation II	6n58 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P0A7Z4; P0A800; P0A8T7; P0A8V2; P41065;	7-613	4×1N7; 1×MG; 3×ZN;
Assess
Escherichia coli RNA polymerase promoter unwinding intermediate (TRPi1.5a) with TraR and mutant rps…	6pss SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P0A7Z4; P0A800; P0A8T7; P0A8V2; P41065;	7-613	1×MG; 3×ZN;
Assess
Escherichia coli RNA polymerase and rrnBP1 promoter complex with DksA/ppGpp	7khi SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P0A7Z4; P0A800; P0A8T7; P0A8V2; P0ABS1;	6-612	4×1N7; 1×MG; 3×ZN; 2×G4P;
Assess
Escherichia coli RNA polymerase closed complex (TRPc) with TraR and rpsT P2 promoter	6psq SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P0A7Z4; P0A800; P0A8T7; P0A8V2; P41065;	7-613	1×MG; 3×ZN; 4×1N7;
Assess
Escherichia coli RNA polymerase promoter unwinding intermediate (TRPi1) with TraR and rpsT P2 promo…	6psr SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P0A7Z4; P0A800; P0A8T7; P0A8V2; P41065;	7-613	4×1N7; 1×MG; 3×ZN;
Assess
Escherichia coli RNA polymerase promoter unwinding intermediate (TRPi1.5b) with TraR and mutant rps…	6pst SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P0A7Z4; P0A800; P0A8T7; P0A8V2; P41065;	7-613	3×ZN; 4×1N7; 1×MG;
Assess
Cryo-EM structure of Escherichia coli sigma70 bound RNAP polymerase holoenzyme	6p1k SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P0A7Z4; P0A800; P0A8T7; P0A8V2;	7-613	1×MG; 2×ZN;
Assess
Cryo-EM structure of Escherichia coli RNAP polymerase bound with TraR in conformation I	6n57 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P0A7Z4; P0A800; P0A8T7; P0A8V2; P41065;	7-613	4×1N7; 3×ZN; 1×MG;
Assess
EM structure of the DNA wrapping in bacterial open transcription initiation complex	6n4c SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P0A7Z4; P0A800; P0A8T7; P0A8V2;	8-613
Assess
X-ray crystal structure of the Escherichia coli RNA polymerase in complex with Benzoxazinorifamycin…	4kn7 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P0A7Z4; P0A800; P0A8T7; P0A8V2;	6-609	1×1RM; 2×ZN; 1×MG;
Assess
X-ray crystal structure of the Escherichia coli RNA polymerase in complex with Rifampin	4kmu SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P0A7Z4; P0A800; P0A8T7; P0A8V2;	6-609	1×RFP; 2×ZN; 1×MG;
Assess
X-ray crystal structure of Escherichia coli sigma70 holoenzyme in complex with Guanosine tetraphosp…	4jk1 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P0A7Z4; P0A800; P0A8T7; P0A8V2;	6-609	2×ZN; 1×G4P;
Assess
X-ray crystal structure of the Escherichia coli RNA polymerase in complex with Benzoxazinorifamycin…	4kn4 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P0A7Z4; P0A800; P0A8T7; P0A8V2;	6-609	1×1RL; 2×ZN; 1×MG;
Assess
X-ray crystal structure of Escherichia coli sigma70 holoenzyme in complex with guanosine pentaphosp…	4jk2 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P0A7Z4; P0A800; P0A8T7; P0A8V2;	6-609	2×ZN; 1×0O2;
Assess
E. coli Transcription Initiation Complex - 16-bp spacer and 5-nt RNA	4ylp SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P0A7Z4; P0A800; P0A8T7; P0A8V2;	79-613	2×ZN; 1×MG;
Assess
E. coli Transcription Initiation Complex - 17-bp spacer and 4-nt RNA	4yln SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer A7ZSI4; A7ZTK1; A7ZUK1; A7ZUK2;	79-613	2×ZN; 1×MG;
Assess
E. coli Transcription Initiation Complex - 16-bp spacer and 4-nt RNA	4ylo SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer A7ZSI4; A7ZTK1; A7ZUK1; P0A8T7;	79-613	1×MG; 2×ZN;
Assess
Cryo-EM structure of SoxS-dependent transcription activation complex with fpr promoter DNA	7w5y SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P0A7Z4; P0A800; P0A8T7; P0A8V2; P0A9E2;	79-613
Assess
Structures of class I bacterial transcription complexes	7beg SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P0A7Z4; P0A800; P0A8T7; P0A8V2; Q48413;	79-613
Assess
The cryo-EM structure of a bacterial class I transcription activation complex	6b6h SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P0A7Z4; P0A800; P0A8T7; P0A8V2; P0ACJ8;	79-613	2×ZN; 1×MG; 2×CMP;
Assess
Cryo-EM structure of SoxS-dependent transcription activation complex with zwf promoter DNA	7w5x SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P0A7Z4; P0A800; P0A8T7; P0A8V2; P0A9E2;	79-613
Assess
Structures of class II bacterial transcription complexes	7bef SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P0A7Z4; P0A800; P0A8T7; P0A8V2; Q48413;	79-613
Assess
CueR-TAC without RNA	6xh7 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P0A7Z4; P0A800; P0A8T7; P0A8V2; P0A9G4;	79-613	2×ZN; 2×CU;
Assess
CueR-transcription activation complex with RNA transcript	6xh8 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P0A7Z4; P0A800; P0A8T7; P0A8V2; P0A9G4;	79-613	2×ZN; 2×CU;
Assess
Structural basis of transcriptional activation by the OmpR/PhoB-family response regulator PmrA	8jo2 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer A0A0R4I965; P0A7Z4; P0A800; P0A8T7; P0A8V2;	79-613
Assess
Cryo-EM structure of Escherichia coli RNA polymerase bound to lambda PR promoter DNA (class 1)	7mkd SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P0A7Z4; P0A800; P0A8T7; P0A8V2;	85-611	3×1N7; 1×MG; 2×ZN;
Assess
Cryo-EM structure of EcmrR-RNAP-promoter open complex (EcmrR-RPo)	6xl5 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P0A7Z4; P0A800; P0A8T7; P0A8V2;	89-613	5×1N7; 1×MG; 2×ZN; 2×118;
Assess
Cryo-EM structure of EcmrR-RNAP-promoter initial transcribing complex with 4-nt RNA transcript (Ecm…	6xlj SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P0A7Z4; P0A800; P0A8T7; P0A8V2;	89-613	5×1N7; 3×118; 2×MG; 2×ZN;
Assess
Cryo-EM structure of E. coli RNAP-promoter initial transcribing complex with 5-nt RNA transcript (R…	6xll SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P0A7Z4; P0A800; P0A8T7; P0A8V2;	89-613	2×1N7; 1×MG; 2×ZN;
Assess
Escherichia coli RNA polymerase promoter unwinding intermediate (TRPo) with TraR and rpsT P2 promot…	6psw SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P0A7Z4; P0A800; P0A8T7; P0A8V2; P41065;	90-613	2×1N7; 1×MG; 3×ZN;
Assess
Structure of Escherichia coli CedA in complex with transcription initiation complex	8ftd SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer C3T7J2; P0A7Z4; P0A800; P0A8T7; P0A8V2; Q0P6L9;	90-613	3×1N7; 1×MG; 2×ZN;
Assess
Cryo-EM structure of Escherichia coli RNAP polymerase bound to rpsTP2 promoter DNA	6oul SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P0A7Z4; P0A800; P0A8V2;	90-613	3×1N7; 1×MG; 2×ZN;
Assess
Cryo-EM structure of E. coli NarL-transcription activation complex at 3.2A	8u3b SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P0A7Z4; P0A800; P0A8T7; P0A8V2; P0AF28;	90-613	2×ZN; 1×MG;
Assess
Escherichia coli RNA polymerase promoter unwinding intermediate (TpreRPo) with TraR and rpsT P2 pro…	6psv SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P0A7Z4; P0A800; P0A8T7; P0A8V2; P41065;	91-613	3×ZN; 4×1N7; 1×MG;
Assess
Cryo-EM structure of E. coli RNAP sigma70 open complex	6ca0 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P0A7Z4; P0A800; P0A8T7; P0A8V2;	90-612	1×MG; 2×ZN;
Assess
Cryo-EM structure of an Escherichia coli RNAP-promoter open complex (RPo) with SspA	7c97 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P0A7Z4; P0A800; P0A8T7; P0A8V2; P0ACA3;	90-612	1×MG; 2×ZN;
Assess
A refined cryo-EM structure of an Escherichia coli RNAP-promoter open complex (RPo) with SspA	7dy6 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P0A7Z4; P0A800; P0A8T7; P0A8V2; P0ACA3;	90-612	1×MG; 2×ZN;
Assess
Cryo-EM structure of an Escherichia coli RNAP-promoter open complex (RPo)	7chw SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P0A7Z4; P0A800; P0A8T7; P0A8V2;	90-612	1×MG; 2×ZN;
Assess
Cryo-EM structure of EcmrR-RNAP-promoter initial transcribing complex with 3-nt RNA transcript (Ecm…	6xl9 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P0A7Z4; P0A8T7; P0A8V2;	92-613	2×ZN; 2×MG; 3×118;
Assess
Escherichia coli RNA polymerase and rrnBP1 promoter open complex	7khb SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P0A7Z4; P0A800; P0A8T7; P0A8V2;	91-612	2×1N7; 1×MG; 2×ZN;
Assess
Cryo-EM structure of Escherichia coli RNA polymerase bound to T7A1 promoter DNA	7mkj SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P0A7Z4; P0A800; P0A8T7; P0A8V2;	90-611	3×1N7; 1×MG; 2×ZN;
Assess
CryoEM structure of sigma appropriation complex	6k4y SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P0A7Z4; P0A800; P0A8T7; P0A8V2; P22915; P32267;	90-611	1×MG; 2×ZN;
Assess
Cryo-EM structure of Escherichia coli RNA polymerase bound to lambda PR (-5G to C) promoter DNA	7mki SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P0A7Z4; P0A800; P0A8T7; P0A8V2;	90-611	3×1N7; 1×MG; 2×ZN;
Assess
Escherichia coli RNA polymerase and rrnBP1 promoter pre-open complex with DksA/ppGpp	7khe SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P0A7Z4; P0A800; P0A8T7; P0A8V2; P0ABS1;	91-612	4×1N7; 1×MG; 3×ZN; 2×G4P;
Assess
Cryo-EM structure of Rifamycin bound to E. coli RNAP and rrnBP1 promoter complex	7szj SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P0A7Z4; P0A800; P0A8T7; P0A8V2;	91-612	1×RFP; 1×MG; 2×ZN;
Assess
Cryo-EM structure of 27a bound to E. coli RNAP and rrnBP1 promoter complex	7szk SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P0A7Z4; P0A800; P0A8T7; P0A8V2;	91-612	1×D9X; 1×MG; 2×ZN;
Assess
E. coli RNAPs70-SspA-gadA DNA complex	6wmu SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P0A7Z4; P0A800; P0A8T7; P0A8V2; P0ACA3;	91-612	1×MG; 2×ZN;
Assess
Crystal Structure Analysis of the E.coli holoenzyme	4ljz SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer	92-612	1×MG; 2×ZN;
Assess
Crystal structure of CBR 9393 bound to Escherichia coli RNA polymerase holoenzyme	4xsz SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer A7ZSI4; A7ZUK1; A7ZUK2; B1IYV1;	92-612	1×42U; 1×MG; 2×ZN;
Assess
Crystal structure of CBR 703 bound to Escherichia coli RNA polymerase holoenzyme	4xsx SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer A7ZSI4; A7ZUK1; A7ZUK2; A8ARN6;	92-612	1×42S; 1×MG; 2×ZN;
Assess
Crystal Structure Analysis of the E.coli holoenzyme/T7 Gp2 complex	4lk0 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P03704;	92-612	1×MG; 2×ZN;
Assess
Crystal structure of CBR 9379 bound to Escherichia coli RNA polymerase holoenzyme	4xsy SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer A7ZSI4; A7ZUK1; A7ZUK2; A8ARN6;	92-612	1×42T; 1×MG; 2×ZN;
Assess
Cryo-EM structure of Rob-dependent transcription activation complex in a unique conformation	7vwz SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P0A7Z4; P0A800; P0A8T7; P0A8V2; P0ACI0;	93-613	2×ZN; 1×MG;
Assess
The E. coli class-II CAP-dependent transcription activation complex at the state 2	6pb6 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P0A7Z4; P0A800; P0A8T7; P0A8V2; P0ACJ8;	93-613	2×ZN; 1×MG; 2×CMP;
Assess
The E. coli class-II CAP-dependent transcription activation complex with de novo RNA transcript at …	6pb4 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P0A7Z4; P0A800; P0A8T7; P0A8V2; P0ACJ8;	93-613	2×ZN; 1×MG; 2×CMP;
Assess
Cryo-EM structure of SoxS-dependent transcription activation complex with micF promoter DNA	7w5w SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P0A7Z4; P0A800; P0A8T7; P0A8V2; P0A9E2;	93-613	2×ZN; 1×MG;
Assess
Cryo-EM structure of Escherichia coli RNA polymerase bound to lambda PR promoter DNA (class 2)	7mke SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P0A7Z4; P0A800; P0A8T7; P0A8V2;	91-611	4×1N7; 1×MG; 2×ZN;
Assess
Cryo-EM structure of Rob-dependent transcription activation complex in a unique conformation	7vwy SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P0A7Z4; P0A800; P0A8T7; P0A8V2; P0ACI0;	93-613	2×ZN; 1×MG;
Assess
Escherichia coli RNA polymerase sigma70-holoenzyme bound to upstream fork promoter DNA and Capistru…	6n61 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P0A7Z4; P0A800; P0A8T7; P0A8V2; Q0P6L9;	94-613	1×EDO; 1×MG; 2×ZN; 1×EPE;
Assess
Escherichia coli RNA polymerase sigma70-holoenzyme bound to upstream fork promoter DNA	6n62 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P0A7Z4; P0A800; P0A8T7; P0A8V2;	94-613	1×MG; 2×ZN;
Assess
The cryo-EM structure of E. coli CueR transcription activation complex	6ldi SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P0A7Z4; P0A800; P0A8T7; P0A8V2; P0A9G4;	93-612	2×ZN; 1×MG; 1×AG;
Assess
Cryo-EM structure of CII-dependent transcription activation complex	8igr SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P03042; P0A7Z4; P0A800; P0A8T7; P0A8V2;	92-611	1×MG; 2×ZN;
Assess
The E. coli class-II CAP-dependent transcription activation complex at the state 1 architecture	6pb5 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P0A7Z4; P0A800; P0A8T7; P0A8V2; P0ACJ8;	94-613	2×ZN; 1×MG; 2×CMP;
Assess
Cryo-EM structure of RNAP-promoter open complex at lambda promoter PRE	8igs SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P0A7Z4; P0A800; P0A8T7; P0A8V2;	92-611	1×MG; 2×ZN;
Assess
The cryo-EM structure of E. coli CueR transcription activation complex with fully duplex promoter D…	7c17 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P0A7Z4; P0A800; P0A8T7; P0A8V2; P0A9G4;	93-612	2×ZN; 1×MG; 1×AG;
Assess
Escherichia coli 6S RNA derivative in complex with Escherichia coli RNA polymerase sigma70-holoenzy…	5vt0 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P0A7Z4; P0A800; P0A8T7; P0A8V2;	94-613	1×MG; 2×ZN;
Assess
Escherichia coli RNA polymerase mutant - RpoB D516V	5uag SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P0A7Z4; P0A800; P0A8T7; P0A8V2;	94-612	2×MG; 2×ZN;
Assess
Escherichia coli RNA polymerase in complex with squaramide compound 8.	4yfk SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer A7ZSI4; A7ZTK1; A7ZUK1; A7ZUK2;	94-612	2×MG; 2×ZN; 1×4C6;
Assess
X-ray crystal structur of Escherichia coli RNA polymerase sigma70 holoenzyme	4yg2 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P0A7Z6; P0A802; P0A8T8; P0A8V4;	94-612	2×MG; 2×ZN;
Assess
Escherichia coli RNA polymerase and Rifampin complex, wild-type	5uac SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P0A7Z4; P0A800; P0A8T7; P0A8V2;	94-612	1×RFP; 1×MG; 2×ZN;
Assess
X-ray crystal structure of Escherichia coli RNA polymerase and TraR complex	5w1s SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P0A7Z4; P0A800; P0A8T7; P0A8V2; P41065;	94-612	1×MG; 3×ZN;
Assess
Escherichia coli RNA polymerase in complex with squaramide compound 14 (N-[3,4-dioxo-2-(4-{[4-(trif…	4yfn SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer A7ZSI4; A7ZTK1; A7ZUK1; A7ZUK2;	94-612	1×MG; 2×ZN; 1×4C2;
Assess
Escherichia coli RNA polymerase and Rifampin complex, RpoB S531L mutant	5ual SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P0A7Z4; P0A800; P0A8T7; P0A8V2;	94-612	1×RFP; 1×MG; 2×ZN;
Assess
Escherichia coli RNA polymerase RpoB S531L mutant	5uaj SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P0A7Z4; P0A800; P0A8T7; P0A8V2;	94-612	1×MG; 2×ZN;
Assess
Escherichia coli RNA polymerase and Rifampin complex, RpoB D516V mutant	5uah SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P0A7Z4; P0A800; P0A8T7; P0A8V2;	94-612	1×RFP; 2×MG; 2×ZN;
Assess
Escherichia coli RpoB S531L mutant RNA polymerase holoenzyme in complex with Kanglemycin A	6cux SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P0A7Z4; P0A800; P0A8T7; P0A8V2;	94-612	1×KNG; 1×MG; 2×ZN;
Assess
Crystal Structure of E. coli RNA Polymerase in complex with ppGpp	4jkr SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer A0A0E0Y7A2;	95-613	6×SR; 1×G4P; 2×ZN;
Assess
X-ray crystal structure of Escherichia coli RNA polymerase and DksA/ppGpp complex	5vsw SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P0A7Z4; P0A800; P0A8T7; P0A8V2; P0ABS1;	94-612	1×MG; 3×ZN; 2×G4P;
Assess
X-ray crystal structure of Escherichia coli RNA polymerase and DksA complex	5w1t SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P0A7Z4; P0A800; P0A8T7; P0A8V2; P0ABS1;	94-612	1×MG; 3×ZN;
Assess
Cryo-EM structure of E. coli RNAP sigma70 holoenzyme	6c9y SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P0A7Z4; P0A800; P0A8T7; P0A8V2;	94-612	1×MG; 2×ZN;
Assess
X-ray crystal structure of Escherichia coli RNA polymerase (RpoB-H526Y) and ppApp complex	6byu SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P0A7Z4; P0A800; P0A8T7; P0A8V2;	95-612	1×ECJ; 1×MG; 2×ZN;
Assess
Escherichia coli RNA polymerase RpoB H526Y mutant	5uaq SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P0A7Z4; P0A800; P0A8T7; P0A8V2;	95-612	1×MG; 2×ZN;
Assess
Crystal structure of Escherichia coli RNA polymerase in complex with salinamide A	4mex SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P0A7Z4; P0A800; P0A8T7; P0A8V2;	95-612	1×MG; 2×ZN;
Assess
Crystal structure of Escherichia coli RNA polymerase holoenzyme	4mey SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P0A7Z4; P0A800; P0A8T7; P0A8V2;	95-612	1×MG; 2×ZN;
Assess
Escherichia coli RNA polymerase sigma70-holoenzyme bound to upstream fork promoter DNA and Microcin…	6n60 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P0A7Z4; P0A800; P0A8T7; P0A8V2; Q0P6L9; Q9X2V7;	94-610	1×MG; 2×ZN;
Assess
Escherichia coli RNA polymerase in complex with Myxopyronin B	4yfx SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer A7ZSI4; A7ZTK1; A7ZUK1; A7ZUK2;	95-609	1×MG; 2×ZN; 1×4C4;
Assess
Escherichia coli RNA polymerase and ureidothiophene-2-carboxylic acid complex	6vjs SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P0A7Z4; P0A800; P0A8T7; P0A8V2;	95-609	1×QZY; 2×ZN; 1×MG;
Assess
Transcription antitermination complex: NusA-containing "engaged" Qlambda-loading complex	7ubn SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P03047; P0A7Z4; P0A800; P0A8T7; P0A8V2; P0AFF6;	90-599	3×ZN; 1×MG;
Assess
Transcription antitermination complex: "pre-engaged" Qlambda-loading complex	7ubm SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P03047; P0A7Z4; P0A800; P0A8T7; P0A8V2;	90-599	3×ZN; 1×MG;
Assess
Three-dimensional EM structure of an intact activator-dependent transcription initiation complex	3iyd SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P0A7Z4; P0A800; P0A8T7; P0A8V2; P0ACJ8;	105-611	2×CMP;
Assess
Escherichia coli RNA polymerase and rrnBP1 promoter closed complex	7khc SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P0A7Z4; P0A800; P0A8T7; P0A8V2;	115-612	1×POP; 2×1N7; 1×MG; 2×ZN;
Assess
Escherichia coli sigma 70-dependent paused transcription elongation complex	7n4e SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P0A7Z4; P0A800; P0A8T7; P0A8V2;	90-501	2×ZN; 1×MG;
Assess
Q21 transcription antitermination complex: loading complex	6p18 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P0A7Z4; P0A800; P0A8T7; P0A8V2; Q9XJQ6;	90-467	2×ZN; 1×MG;
Assess
Cryo-EM structure of a Q-engaged arrested complex	6jnx SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer M1FPN0; P0A7Z4; P0A800; P0A8T7; P0A8V2;	90-447	1×MG; 2×ZN;
Assess
Cryo-EM structure of sigma70 bound HK022 putRNA-associated E.coli RNA polymerase elongation complex	7xui SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P0A7Z4; P0A800; P0A8T7; P0A8V2;	112-447	2×ZN; 1×MG;
Assess
Cryo-EM structure of E.coli RNAP-DNA elongation complex 1 (RDe1) in EcmrR-dependent transcription	6xlm SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P0A7Z4; P0A800; P0A8T7; P0A8V2;	113-446	2×1N7; 1×MG; 2×ZN;
Assess
RNA polymerase at U-rich pause bound to RNA putL triple mutant - pause prone, closed clamp state	8ad1 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P0A7Z4; P0A800; P0A8T7; P0A8V2;	118-445	1×MG; 2×ZN;
Assess
PhoB(E)-Sigma70(4)-(RNAP-Betha-flap-tip-helix)-DNA Transcription Activation Sub-Complex	3t72 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P0A8V2; P0AFJ5;	533-609
Assess
Crystal structure of the Escherichia coli regulator of sigma 70, Rsd, in complex with sigma 70 doma…	2p7v SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P0AFX4; Q0P6L9;	546-613	1×MG;
Assess
T4 AsiA bound to sigma70 region 4	1tlh SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P32267;	546-613
Assess
CRYSTAL STRUCTURE OF A SIGMA70 SUBUNIT FRAGMENT FROM ESCHERICHIA COLI RNA POLYMERASE	1sig SMTL PDBe PDBe-KB PDBj PDBsum RCSB	monomer	114-446
Assess

3 SWISS-MODEL models

Template	Oligo-state	QMEANDisCo	Range	Trg-Tpl Seq id (%)
6cce.1.G	monomer	0.73	340-612	55.31
Assess
4zh4.2.F	monomer	0.70	7-613	100.00
Assess
3lev.1.A	monomer	0.53	340-446	66.67
Assess

Model ID	Oligo-state	Avg pLDDT	Range	Trg-Mdl Seq Id (%)

Model ID	Oligo-state	Avg Confidence	Range	Trg-Mdl Seq id (%)

P00579 (RPOD_ECOLI) Escherichia coli (strain K12)

RNA polymerase sigma factor RpoD UniProtKBInterProSTRINGInteractive Modelling

Available Structures

107 Experimental Structures

3 SWISS-MODEL models

Alignments

Background

Resolution

RNA polymerase sigma factor RpoD UniProtKB InterPro STRING Interactive Modelling