P0C6U3 (R1A_CVHN1) Human coronavirus HKU1 (isolate N1) (HCoV-HKU1)

Replicase polyprotein 1a UniProtKBInterProInteractive Modelling

4471 aa; Sequence (Fasta)

Molecule Processing
Non-structural protein 1
Non-structural protein 2
Non-structural protein 3
Non-structural protein 4
3C-like proteinase
Non-structural protein 6
Non-structural protein 7
Non-structural protein 8
Non-structural protein 9
Non-structural protein 10
Non-structural protein 11

Sequence Features

Add
 1161For PL1-PRO activity
 1312For PL1-PRO activity
 1757For PL2-PRO activity
 1914For PL2-PRO activity
 3375For 3CL-PRO activity
 3479For 3CL-PRO activity
 2226-2246Helical
 2287-2307Helical
 2318-2338Helical
 2401-2421Helical
 2443-2463Helical
 2844-2864Helical
 3119-3139Helical
 3151-3171Helical
 3178-3198Helical
 3203-3223Helical
 3651-3671Helical
 3676-3696Helical
 3701-3721Helical
 3744-3764Helical
 3772-3792Helical
 3800-3820Helical
 3843-3863Helical
 1238-1266C4-type 1
 1835-1871C4-type 2
 4394-4410
 4436-4449
 222-223Cleavage; by PL1-PRO
 809-810Cleavage; by PL1-PRO
 2838-2839Cleavage; by PL2-PRO
 3334-3335Cleavage; by 3CL-PRO
 3637-3638Cleavage; by 3CL-PRO
 3924-3925Cleavage; by 3CL-PRO
 4016-4017Cleavage; by 3CL-PRO
 4210-4211Cleavage; by 3CL-PRO
 4320-4321Cleavage; by 3CL-PRO
 4457-4458Cleavage; by 3CL-PRO
 1-330Betacoronavirus NSP1
IPR022570PF11963
 646-809Non-structural protein 2, C-terminal domain, coronavirus
IPR043613PF19212
 1124-1372Peptidase C30/C16, Betacoronavirus
IPR002705PF01831
 1384-1488Macro domain
IPR002589PF01661
 1649-1951Peptidase C16, coronavirus
IPR013016PF08715
 1986-2102Non-structural protein NSP3, nucleic acid-binding (NAR) domain, betacoronavirus
IPR032592PF16251
 2338-2823Coronavirus replicase NSP3, C-terminal
IPR043611PF19218
 2860-3216Coronavirus replicase NSP4, N-terminal
IPR043612PF19217
 3245-3332Non-structural protein NSP4, C-terminal, coronavirus
IPR032505PF16348
 3363-3650Peptidase C30, coronavirus
IPR008740PF05409
 3665-3924Non-structural protein 6, coronavirus
IPR043610PF19213
 3925-4013Non-structural protein NSP7, coronavirus
IPR014828PF08716
 4014-4204Non-structural protein NSP8, coronavirus-like
IPR014829PF08717
 4211-4320Non-structural protein NSP9, coronavirus
IPR014822PF08710
 4329-4449RNA synthesis protein NSP10, coronavirus
IPR018995PF09401

Sequence Alignments

Non-structural protein 3 810-2838; PRO_0000338197

Oligo-stateLigandsQMEANTemplateRangeSeq id (%)
monomer ZN;-1.234ypt.1.A1574-1951
64.25
Assess

3C-like proteinase 3335-3637; PRO_0000338199

DescriptionOligo-stateLigandsStructureRange
Main protease of HCoV-HKU1homo-4-mer 3d23 3335-3634
Assess