P0C6V1 (R1A_CVMJH) Murine coronavirus (strain JHM) (MHV-JHM) (Murine hepatitis virus)

Replicase polyprotein 1a UniProtKBInterProInteractive Modelling

4474 aa; Sequence (Fasta)

Molecule Processing
Non-structural protein 1
Non-structural protein 2
Non-structural protein 3
Non-structural protein 4
3C-like proteinase
Non-structural protein 6
Non-structural protein 7
Non-structural protein 8
Non-structural protein 9
Non-structural protein 10
Non-structural protein 11

Sequence Features

Add
 1120For PL1-PRO activity
 1271For PL1-PRO activity
 1715For PL2-PRO activity
 1872For PL2-PRO activity
 3377For 3CL-PRO activity
 3481For 3CL-PRO activity
 2289-2309Helical
 2320-2340Helical
 2403-2423Helical
 2445-2465Helical
 2846-2866Helical
 3099-3119Helical
 3121-3141Helical
 3153-3173Helical
 3180-3200Helical
 3205-3225Helical
 3648-3668Helical
 3678-3698Helical
 3705-3725Helical
 3748-3768Helical
 3775-3795Helical
 3802-3822Helical
 3846-3866Helical
 1197-1225C4-type 1
 1793-1829C4-type 2
 4397-4413
 4439-4452
 247-248Cleavage; by PL1-PRO
 832-833Cleavage; by PL1-PRO
 2840-2841Cleavage; by PL2-PRO
 3336-3337Cleavage; by 3CL-PRO
 3639-3640Cleavage; by 3CL-PRO
 3927-3928Cleavage; by 3CL-PRO
 4019-4020Cleavage; by 3CL-PRO
 4213-4214Cleavage; by 3CL-PRO
 4323-4324Cleavage; by 3CL-PRO
 4460-4461Cleavage; by 3CL-PRO
 1-355Betacoronavirus NSP1
IPR022570PF11963
 671-832Non-structural protein 2, C-terminal domain, coronavirus
IPR043613PF19212
 926-1073Betacoronavirus NSP1
IPR022570PF11963
 1083-1331Peptidase C30/C16, Betacoronavirus
IPR002705PF01831
 1343-1448Macro domain
IPR002589PF01661
 1610-1912Peptidase C16, coronavirus
IPR013016PF08715
 1944-2060Non-structural protein NSP3, nucleic acid-binding (NAR) domain, betacoronavirus
IPR032592PF16251
 2340-2825Coronavirus replicase NSP3, C-terminal
IPR043611PF19218
 2862-3218Coronavirus replicase NSP4, N-terminal
IPR043612PF19217
 3242-3334Non-structural protein NSP4, C-terminal, coronavirus
IPR032505PF16348
 3365-3652Peptidase C30, coronavirus
IPR008740PF05409
 3667-3927Non-structural protein 6, coronavirus
IPR043610PF19213
 3928-4016Non-structural protein NSP7, coronavirus
IPR014828PF08716
 4017-4210Non-structural protein NSP8, coronavirus-like
IPR014829PF08717
 4214-4323Non-structural protein NSP9, coronavirus
IPR014822PF08710
 4332-4452RNA synthesis protein NSP10, coronavirus
IPR018995PF09401

Sequence Alignments

Non-structural protein 3 833-2840; PRO_0000338293

Oligo-stateLigandsQMEANTemplateRangeSeq id (%)
monomer ZN;-1.294ypt.1.A1532-1909
94.06
Assess

3C-like proteinase 3337-3639; PRO_0000338295

Oligo-stateLigandsQMEANTemplateRangeSeq id (%)
monomer 02J;-0.616jij.1.A3337-3635
97.34
Assess