P0C6V3 (R1A_IBVB) Avian infectious bronchitis virus (strain Beaudette) (IBV)
Replicase polyprotein 1a UniProtKBInterProInteractive Modelling
3951 aa; Sequence (Fasta) Identical sequences: Avian infectious bronchitis virus: P0C6V4
Molecule Processing
| Non-structural protein 2 | |
| Non-structural protein 3 | |
| Non-structural protein 4 | |
| 3C-like proteinase | |
| Non-structural protein 6 | |
| Non-structural protein 7 | |
| Non-structural protein 8 | |
| Non-structural protein 9 | |
| Non-structural protein 10 | |
| Non-structural protein 11 |
It is possible new templates exist for this target since these models were created.
Sequence Features
| 1274 | For PL-PRO activity | ||
| 1437 | For PL-PRO activity | ||
| 2820 | For 3CL-PRO activity | ||
| 2922 | For 3CL-PRO activity | ||
| 105 | P -> S (in strain: Isolate Vero cell-adapted p65) | ||
| 919 | K -> E (in strain: Isolate Vero cell-adapted p65) | ||
| 932 | L -> I (in strain: Isolate Vero cell-adapted p65) | ||
| 948 | D -> G (in strain: Isolate Vero cell-adapted p65) | ||
| 967 | A -> D (in strain: Isolate Vero cell-adapted p65) | ||
| 1133 | L -> S (in strain: Isolate Vero cell-adapted p65) | ||
| 1388 | P -> S (in strain: Isolate Vero cell-adapted p65) | ||
| 1753 | L -> F (in strain: Isolate Vero cell-adapted p65) | ||
| 2561 | Q -> H (in strain: Isolate Vero cell-adapted p65) | ||
| 3058 | Missing (in strain: Isolate Vero cell-adapted p65) | ||
| 3242 | N -> S (in strain: Isolate Vero cell-adapted p65) | ||
| 3409 | V -> A (in strain: Isolate Vero cell-adapted p65) | ||
| 3418 | I -> T (in strain: Isolate Vero cell-adapted p65) | ||
| 3751 | V -> D (in strain: Isolate Vero cell-adapted p65) | ||
| 3870 | S -> G (in strain: Isolate Vero cell-adapted p65) | ||
| 3935 | D -> G (in strain: Isolate Vero cell-adapted p65) | ||
| 1751-1771 | Helical | ||
| 1844-1864 | Helical | ||
| 1887-1907 | Helical | ||
| 2281-2301 | Helical | ||
| 2560-2580 | Helical | ||
| 2589-2609 | Helical | ||
| 2612-2632 | Helical | ||
| 2644-2664 | Helical | ||
| 3101-3121 | Helical | ||
| 3122-3142 | Helical | ||
| 3152-3172 | Helical | ||
| 3189-3209 | Helical | ||
| 3220-3240 | Helical | ||
| 3258-3278 | Helical | ||
| 3297-3317 | Helical | ||
| 1353-1390 | C4-type | ||
| 3858-3878 | |||
| 3904-3917 | |||
| 673-674 | Cleavage; by PL-PRO | ||
| 2265-2266 | Cleavage; by PL-PRO | ||
| 2779-2780 | Cleavage; by 3CL-PRO | ||
| 3086-3087 | Cleavage; by 3CL-PRO | ||
| 3379-3380 | Cleavage; by 3CL-PRO | ||
| 3462-3463 | Cleavage; by 3CL-PRO | ||
| 3672-3673 | Cleavage; by 3CL-PRO | ||
| 3783-3784 | Cleavage; by 3CL-PRO | ||
| 3928-3929 | Cleavage; by 3CL-PRO | ||
| 3471-3472 | IP -> MT (in strain: Isolate Vero cell-adapted p65) | ||
| 14-371 | Non-structural protein 2, gammacoronavirus IPR040795PF17896 | ||
| 1040-1145 | Macro domain IPR002589PF01661 | ||
| 1174-1482 | Peptidase C16, coronavirus IPR013016PF08715 | ||
| 1783-2248 | Coronavirus replicase NSP3, C-terminal IPR043611PF19218 | ||
| 2305-2656 | Coronavirus replicase NSP4, N-terminal IPR043612PF19217 | ||
| 2684-2776 | Non-structural protein NSP4, C-terminal, coronavirus IPR032505PF16348 | ||
| 2808-3096 | Peptidase C30, coronavirus IPR008740PF05409 | ||
| 3113-3379 | Non-structural protein 6, coronavirus IPR043610PF19213 | ||
| 3381-3462 | Non-structural protein NSP7, coronavirus IPR014828PF08716 | ||
| 3463-3667 | Non-structural protein NSP8, coronavirus-like IPR014829PF08717 | ||
| 3673-3783 | Non-structural protein NSP9, coronavirus IPR014822PF08710 | ||
| 3796-3918 | RNA synthesis protein NSP10, coronavirus IPR018995PF09401 |
Sequence Alignments
Non-structural protein 2 1-673; PRO_0000338315
| Oligo-state | Ligands | QMEAN | Template | Range | Seq id (%) |
|---|---|---|---|---|---|
| monomer | -2.80 | 3ld1.1.A | 92.74 | ||
| Assess | |||||
Non-structural protein 3 674-2265; PRO_0000338316
| Oligo-state | Ligands | QMEAN | Template | Range | Seq id (%) |
|---|---|---|---|---|---|
| monomer | 1×ZN; | -1.03 | 4x2z.1.A | 100.00 | |
| Assess | |||||
3C-like proteinase 2780-3086; PRO_0000338318
| Oligo-state | Ligands | QMEAN | Template | Range | Seq id (%) |
|---|---|---|---|---|---|
| homo-2-mer | 2×02J; | 0.50 | 2q6f.1.A | 94.48 | |
| Assess | |||||