P0C6W7 (R1AB_CVBEN) Bovine coronavirus (strain 98TXSF-110-ENT) (BCoV-ENT) (BCV)

Replicase polyprotein 1ab UniProtKBInterProInteractive Modelling

7094 aa; Sequence (Fasta)

Molecule Processing
Host translation inhibitor nsp1
Non-structural protein 2
Papain-like proteinase
Non-structural protein 4
3C-like proteinase
Non-structural protein 6
Non-structural protein 7
Non-structural protein 8
Non-structural protein 9
Non-structural protein 10
RNA-directed RNA polymerase
Helicase
Guanine-N7 methyltransferase
Uridylate-specific endoribonuclease
2'-O-methyltransferase

Sequence Features

Add
 1074For PL1-PRO activity
 1225For PL1-PRO activity
 1671For PL2-PRO activity
 1828For PL2-PRO activity
 3287For 3CL-PRO activity
 3391For 3CL-PRO activity
 5302Zinc 1
 5305Zinc 1
 5313Zinc 2
 5316Zinc 1
 5323Zinc 1
 5326Zinc 2
 5330Zinc 2
 5336Zinc 2
 5347Zinc 3
 5352Zinc 3
 5369Zinc 3
 5372Zinc 3
 2138-2158Helical
 2199-2219Helical
 2227-2247Helical
 2313-2333Helical
 2343-2363Helical
 2365-2385Helical
 2752-2772Helical
 2824-2844Helical
 3009-3029Helical
 3031-3051Helical
 3063-3083Helical
 3090-3110Helical
 3115-3135Helical
 3558-3578Helical
 3588-3608Helical
 3614-3634Helical
 3657-3677Helical
 3684-3704Helical
 3711-3731Helical
 3755-3775Helical
 1151-1179C4-type 1
 1749-1785C4-type 2
 4306-4322
 4348-4361
 5578-5585ATP
 246-247Cleavage; by PL1-PRO
 851-852Cleavage; by PL1-PRO
 2750-2751Cleavage; by PL2-PRO
 3246-3247Cleavage; by 3CL-PRO
 3549-3550Cleavage; by 3CL-PRO
 3836-3837Cleavage; by 3CL-PRO
 3925-3926Cleavage; by 3CL-PRO
 4122-4123Cleavage; by 3CL-PRO
 4232-4233Cleavage; by 3CL-PRO
 4369-4370Cleavage; by 3CL-PRO
 5297-5298Cleavage; by 3CL-PRO
 5900-5901Cleavage; by 3CL-PRO
 6421-6422Cleavage; by 3CL-PRO
 6795-6796Cleavage; by 3CL-PRO
 1-354Betacoronavirus NSP1
IPR022570PF11963
 678-850Non-structural protein 2, C-terminal domain, coronavirus
IPR043613PF19212
 1055-1285Peptidase C30/C16, Betacoronavirus
IPR002705PF01831
 1297-1401Macro domain
IPR002589PF01661
 1565-1865Peptidase C16, coronavirus
IPR013016PF08715
 1900-2016Non-structural protein NSP3, nucleic acid-binding (NAR) domain, betacoronavirus
IPR032592PF16251
 2250-2735Coronavirus replicase NSP3, C-terminal
IPR043611PF19218
 2772-3128Coronavirus replicase NSP4, N-terminal
IPR043612PF19217
 3153-3244Non-structural protein NSP4, C-terminal, coronavirus
IPR032505PF16348
 3275-3562Peptidase C30, coronavirus
IPR008740PF05409
 3577-3836Non-structural protein 6, coronavirus
IPR043610PF19213
 3837-3925Non-structural protein NSP7, coronavirus
IPR014828PF08716
 3926-4116Non-structural protein NSP8, coronavirus-like
IPR014829PF08717
 4123-4232Non-structural protein NSP9, coronavirus
IPR014822PF08710
 4241-4361RNA synthesis protein NSP10, coronavirus
IPR018995PF09401
 4383-4731RNA polymerase, N-terminal, coronaviral
IPR009469PF06478
 4764-5254RNA-directed RNA polymerase, C-terminal domain
IPR001205PF00680
 5729-5871DNA2/NAM7 helicase-like, C-terminal
IPR041679PF13087
 5902-6419Non-structural protein 14, coronavirus
IPR009466PF06471
 6422-6482Coronavirus replicase NSP15, N-terminal oligomerisation
IPR043606PF19219
 6492-6583Coronavirus replicase NSP15, middle domain
IPR043608PF19216
 6641-6793NendoU domain, nidovirus
IPR043609PF19215
 6798-7093Non-structural protein NSP16, coronavirus-like
IPR009461PF06460

Sequence Alignments

Papain-like proteinase 852-2750; PRO_0000037231

Oligo-stateLigandsQMEANTemplateRangeSeq id (%)
monomer ZN;-0.644ypt.1.A1487-1865
65.12
Assess

3C-like proteinase 3247-3549; PRO_0000037233

Oligo-stateLigandsQMEANTemplateRangeSeq id (%)
monomer -1.053d23.1.C3248-3545
84.00
Assess

RNA-directed RNA polymerase 4370-5297; PRO_0000037239

Oligo-stateLigandsQMEANTemplateRangeSeq id (%)
monomer ZN;-1.857c2k.1.A4370-5294
66.34
Assess

Guanine-N7 methyltransferase 5901-6421; PRO_0000037241

Oligo-stateLigandsQMEANTemplateRangeSeq id (%)
monomer ZN;-3.635nfy.1.A5901-6419
58.05
Assess

Uridylate-specific endoribonuclease 6422-6795; PRO_0000037242

Oligo-stateLigandsQMEANTemplateRangeSeq id (%)
monomer -2.622gth.1.A6422-6790
76.96
Assess