P0C6X2 (R1AB_CVHN1) Human coronavirus HKU1 (isolate N1) (HCoV-HKU1)

Replicase polyprotein 1ab UniProtKBInterProInteractive Modelling

7182 aa; Sequence (Fasta)

Molecule Processing
Host translation inhibitor nsp1
Non-structural protein 2
Papain-like proteinase
Non-structural protein 4
3C-like proteinase
Non-structural protein 6
Non-structural protein 7
Non-structural protein 8
Non-structural protein 9
Non-structural protein 10
RNA-directed RNA polymerase
Helicase
Guanine-N7 methyltransferase
Uridylate-specific endoribonuclease
2'-O-methyltransferase

Sequence Features

Add
 1161For PL1-PRO activity
 1312For PL1-PRO activity
 1757For PL2-PRO activity
 1914For PL2-PRO activity
 3375For 3CL-PRO activity
 3479For 3CL-PRO activity
 5390Zinc 1
 5393Zinc 1
 5401Zinc 2
 5404Zinc 1
 5411Zinc 1
 5414Zinc 2
 5418Zinc 2
 5424Zinc 2
 5435Zinc 3
 5440Zinc 3
 5457Zinc 3
 5460Zinc 3
 2226-2246Helical
 2287-2307Helical
 2318-2338Helical
 2401-2421Helical
 2443-2463Helical
 2844-2864Helical
 3119-3139Helical
 3151-3171Helical
 3178-3198Helical
 3203-3223Helical
 3651-3671Helical
 3676-3696Helical
 3701-3721Helical
 3744-3764Helical
 3772-3792Helical
 3800-3820Helical
 3843-3863Helical
 1238-1266C4-type 1
 1835-1871C4-type 2
 4394-4410
 4436-4449
 5666-5673ATP
 222-223Cleavage; by PL1-PRO
 809-810Cleavage; by PL1-PRO
 2838-2839Cleavage; by PL2-PRO
 3334-3335Cleavage; by 3CL-PRO
 3637-3638Cleavage; by 3CL-PRO
 3924-3925Cleavage; by 3CL-PRO
 4016-4017Cleavage; by 3CL-PRO
 4210-4211Cleavage; by 3CL-PRO
 4320-4321Cleavage; by 3CL-PRO
 4457-4458Cleavage; by 3CL-PRO
 5385-5386Cleavage; by 3CL-PRO
 6509-6510Cleavage; by 3CL-PRO
 6883-6884Cleavage; by 3CL-PRO
 1-330Betacoronavirus NSP1
IPR022570PF11963
 646-809Non-structural protein 2, C-terminal domain, coronavirus
IPR043613PF19212
 1124-1372Peptidase C30/C16, Betacoronavirus
IPR002705PF01831
 1384-1488Macro domain
IPR002589PF01661
 1649-1951Peptidase C16, coronavirus
IPR013016PF08715
 1986-2102Non-structural protein NSP3, nucleic acid-binding (NAR) domain, betacoronavirus
IPR032592PF16251
 2338-2823Coronavirus replicase NSP3, C-terminal
IPR043611PF19218
 2860-3216Coronavirus replicase NSP4, N-terminal
IPR043612PF19217
 3245-3332Non-structural protein NSP4, C-terminal, coronavirus
IPR032505PF16348
 3363-3650Peptidase C30, coronavirus
IPR008740PF05409
 3665-3924Non-structural protein 6, coronavirus
IPR043610PF19213
 3925-4013Non-structural protein NSP7, coronavirus
IPR014828PF08716
 4014-4204Non-structural protein NSP8, coronavirus-like
IPR014829PF08717
 4211-4320Non-structural protein NSP9, coronavirus
IPR014822PF08710
 4329-4449RNA synthesis protein NSP10, coronavirus
IPR018995PF09401
 4471-4819RNA polymerase, N-terminal, coronaviral
IPR009469PF06478
 4852-5342RNA-directed RNA polymerase, C-terminal domain
IPR001205PF00680
 5818-5959DNA2/NAM7 helicase-like, C-terminal
IPR041679PF13087
 5990-6506Non-structural protein 14, coronavirus
IPR009466PF06471
 6510-6570Coronavirus replicase NSP15, N-terminal oligomerisation
IPR043606PF19219
 6580-6671Coronavirus replicase NSP15, middle domain
IPR043608PF19216
 6729-6881NendoU domain, nidovirus
IPR043609PF19215
 6886-7181Non-structural protein NSP16, coronavirus-like
IPR009461PF06460

Sequence Alignments

Papain-like proteinase 810-2838; PRO_5000093335

Oligo-stateLigandsQMEANTemplateRangeSeq id (%)
monomer ZN;-1.014ypt.1.A1574-1951
64.25
Assess

3C-like proteinase 3335-3637; PRO_5000093337

Oligo-stateLigandsQMEANTemplateRangeSeq id (%)
monomer 02J;-1.193d23.1.A3335-3634
100.00
Assess

RNA-directed RNA polymerase 4458-5385; PRO_5000093343

Oligo-stateLigandsQMEANTemplateRangeSeq id (%)
monomer ZN;-1.857c2k.1.A4458-5382
67.42
Assess

Guanine-N7 methyltransferase 5989-6509; PRO_5000093345

Oligo-stateLigandsQMEANTemplateRangeSeq id (%)
monomer ZN;-4.185nfy.1.A5991-6507
57.92
Assess

Uridylate-specific endoribonuclease 6510-6883; PRO_5000093346

Oligo-stateLigandsQMEANTemplateRangeSeq id (%)
monomer -2.122gth.1.A6510-6878
76.42
Assess