P0C6X3 (R1AB_CVHN2) Human coronavirus HKU1 (isolate N2) (HCoV-HKU1)
Replicase polyprotein 1ab UniProtKBInterProInteractive Modelling
7152 aa; Sequence (Fasta) Identical sequences: Human coronavirus HKU1: A0A3G2KXK3
Molecule Processing
| Host translation inhibitor nsp1 | |
| Non-structural protein 2 | |
| Papain-like proteinase | |
| Non-structural protein 4 | |
| 3C-like proteinase | |
| Non-structural protein 6 | |
| Non-structural protein 7 | |
| Non-structural protein 8 | |
| Non-structural protein 9 | |
| Non-structural protein 10 | |
| RNA-directed RNA polymerase | |
| Helicase | |
| Guanine-N7 methyltransferase | |
| Uridylate-specific endoribonuclease | |
| 2'-O-methyltransferase |
It is possible new templates exist for this target since these models were created.
Sequence Features
| 1131 | For PL1-PRO activity | ||
| 1282 | For PL1-PRO activity | ||
| 1727 | For PL2-PRO activity | ||
| 1884 | For PL2-PRO activity | ||
| 3345 | For 3CL-PRO activity | ||
| 3449 | For 3CL-PRO activity | ||
| 5360 | Zinc 1 | ||
| 5363 | Zinc 1 | ||
| 5371 | Zinc 2 | ||
| 5374 | Zinc 1 | ||
| 5381 | Zinc 1 | ||
| 5384 | Zinc 2 | ||
| 5388 | Zinc 2 | ||
| 5394 | Zinc 2 | ||
| 5405 | Zinc 3 | ||
| 5410 | Zinc 3 | ||
| 5427 | Zinc 3 | ||
| 5430 | Zinc 3 | ||
| 2196-2216 | Helical | ||
| 2257-2277 | Helical | ||
| 2288-2308 | Helical | ||
| 2371-2391 | Helical | ||
| 2413-2433 | Helical | ||
| 2814-2834 | Helical | ||
| 3089-3109 | Helical | ||
| 3121-3141 | Helical | ||
| 3148-3168 | Helical | ||
| 3173-3193 | Helical | ||
| 3621-3641 | Helical | ||
| 3646-3666 | Helical | ||
| 3671-3691 | Helical | ||
| 3714-3734 | Helical | ||
| 3742-3762 | Helical | ||
| 3770-3790 | Helical | ||
| 3813-3833 | Helical | ||
| 1208-1236 | C4-type 1 | ||
| 1805-1841 | C4-type 2 | ||
| 4364-4380 | |||
| 4406-4419 | |||
| 5636-5643 | ATP | ||
| 222-223 | Cleavage; by PL1-PRO | ||
| 809-810 | Cleavage; by PL1-PRO | ||
| 2808-2809 | Cleavage; by PL2-PRO | ||
| 3304-3305 | Cleavage; by 3CL-PRO | ||
| 3607-3608 | Cleavage; by 3CL-PRO | ||
| 3894-3895 | Cleavage; by 3CL-PRO | ||
| 3986-3987 | Cleavage; by 3CL-PRO | ||
| 4180-4181 | Cleavage; by 3CL-PRO | ||
| 4290-4291 | Cleavage; by 3CL-PRO | ||
| 4427-4428 | Cleavage; by 3CL-PRO | ||
| 5355-5356 | Cleavage; by 3CL-PRO | ||
| 6479-6480 | Cleavage; by 3CL-PRO | ||
| 6853-6854 | Cleavage; by 3CL-PRO | ||
| 1-330 | Betacoronavirus NSP1 IPR022570PF11963 | ||
| 646-809 | Non-structural protein 2, C-terminal domain, coronavirus IPR043613PF19212 | ||
| 1094-1342 | Peptidase C30/C16, Betacoronavirus IPR002705PF01831 | ||
| 1354-1458 | Macro domain IPR002589PF01661 | ||
| 1619-1921 | Peptidase C16, coronavirus IPR013016PF08715 | ||
| 1956-2072 | Non-structural protein NSP3, nucleic acid-binding (NAR) domain, betacoronavirus IPR032592PF16251 | ||
| 2308-2793 | Coronavirus replicase NSP3, C-terminal IPR043611PF19218 | ||
| 2830-3186 | Coronavirus replicase NSP4, N-terminal IPR043612PF19217 | ||
| 3215-3302 | Non-structural protein NSP4, C-terminal, coronavirus IPR032505PF16348 | ||
| 3333-3620 | Peptidase C30, coronavirus IPR008740PF05409 | ||
| 3635-3894 | Non-structural protein 6, coronavirus IPR043610PF19213 | ||
| 3895-3983 | Non-structural protein NSP7, coronavirus IPR014828PF08716 | ||
| 3984-4174 | Non-structural protein NSP8, coronavirus-like IPR014829PF08717 | ||
| 4181-4290 | Non-structural protein NSP9, coronavirus IPR014822PF08710 | ||
| 4299-4419 | RNA synthesis protein NSP10, coronavirus IPR018995PF09401 | ||
| 4441-4789 | RNA polymerase, N-terminal, coronaviral IPR009469PF06478 | ||
| 4822-5312 | RNA-directed RNA polymerase, C-terminal domain IPR001205PF00680 | ||
| 5788-5929 | DNA2/NAM7 helicase-like, C-terminal IPR041679PF13087 | ||
| 5960-6476 | Non-structural protein 14, coronavirus IPR009466PF06471 | ||
| 6480-6540 | Coronavirus replicase NSP15, N-terminal oligomerisation IPR043606PF19219 | ||
| 6550-6641 | Coronavirus replicase NSP15, middle domain IPR043608PF19216 | ||
| 6699-6851 | NendoU domain, nidovirus IPR043609PF19215 | ||
| 6856-7151 | Non-structural protein NSP16, coronavirus-like IPR009461PF06460 |
Sequence Alignments
Papain-like proteinase 810-2808; PRO_0000297775
| Oligo-state | Ligands | QMEAN | Template | Range | Seq id (%) |
|---|---|---|---|---|---|
| monomer | 1×ZN; | -1.01 | 4ypt.1.A | 64.25 | |
| Assess | |||||
3C-like proteinase 3305-3607; PRO_0000297777
| Oligo-state | Ligands | QMEAN | Template | Range | Seq id (%) |
|---|---|---|---|---|---|
| monomer | 1×02J; | -1.21 | 3d23.1.A | 98.67 | |
| Assess | |||||
RNA-directed RNA polymerase 4428-5355; PRO_0000297783
| Oligo-state | Ligands | QMEAN | Template | Range | Seq id (%) |
|---|---|---|---|---|---|
| monomer | 2×ZN; | -1.91 | 7c2k.1.A | 67.31 | |
| Assess | |||||
Guanine-N7 methyltransferase 5959-6479; PRO_0000297785
| Oligo-state | Ligands | QMEAN | Template | Range | Seq id (%) |
|---|---|---|---|---|---|
| monomer | 1×ZN; | -4.37 | 5nfy.1.A | 57.97 | |
| Assess | |||||
Uridylate-specific endoribonuclease 6480-6853; PRO_0000297786
| Oligo-state | Ligands | QMEAN | Template | Range | Seq id (%) |
|---|---|---|---|---|---|
| monomer | -2.61 | 2gth.1.A | 77.51 | ||
| Assess | |||||
2'-O-methyltransferase 6854-7152; PRO_0000297787
| Oligo-state | Ligands | QMEAN | Template | Range | Seq id (%) |
|---|---|---|---|---|---|
| monomer | 1×SAM; | -2.41 | 6wks.1.A | 63.97 | |
| Assess | |||||