P0C6X3 (R1AB_CVHN2) Human coronavirus HKU1 (isolate N2) (HCoV-HKU1)

Replicase polyprotein 1ab UniProtKBInterProInteractive Modelling

7152 aa; Sequence (Fasta) Identical sequences: Human coronavirus HKU1: A0A3G2KXK3

Molecule Processing
Host translation inhibitor nsp1
Non-structural protein 2
Papain-like proteinase
Non-structural protein 4
3C-like proteinase
Non-structural protein 6
Non-structural protein 7
Non-structural protein 8
Non-structural protein 9
Non-structural protein 10
RNA-directed RNA polymerase
Helicase
Guanine-N7 methyltransferase
Uridylate-specific endoribonuclease
2'-O-methyltransferase

Sequence Features

Add
 1131For PL1-PRO activity
 1282For PL1-PRO activity
 1727For PL2-PRO activity
 1884For PL2-PRO activity
 3345For 3CL-PRO activity
 3449For 3CL-PRO activity
 5360Zinc 1
 5363Zinc 1
 5371Zinc 2
 5374Zinc 1
 5381Zinc 1
 5384Zinc 2
 5388Zinc 2
 5394Zinc 2
 5405Zinc 3
 5410Zinc 3
 5427Zinc 3
 5430Zinc 3
 2196-2216Helical
 2257-2277Helical
 2288-2308Helical
 2371-2391Helical
 2413-2433Helical
 2814-2834Helical
 3089-3109Helical
 3121-3141Helical
 3148-3168Helical
 3173-3193Helical
 3621-3641Helical
 3646-3666Helical
 3671-3691Helical
 3714-3734Helical
 3742-3762Helical
 3770-3790Helical
 3813-3833Helical
 1208-1236C4-type 1
 1805-1841C4-type 2
 4364-4380
 4406-4419
 5636-5643ATP
 222-223Cleavage; by PL1-PRO
 809-810Cleavage; by PL1-PRO
 2808-2809Cleavage; by PL2-PRO
 3304-3305Cleavage; by 3CL-PRO
 3607-3608Cleavage; by 3CL-PRO
 3894-3895Cleavage; by 3CL-PRO
 3986-3987Cleavage; by 3CL-PRO
 4180-4181Cleavage; by 3CL-PRO
 4290-4291Cleavage; by 3CL-PRO
 4427-4428Cleavage; by 3CL-PRO
 5355-5356Cleavage; by 3CL-PRO
 6479-6480Cleavage; by 3CL-PRO
 6853-6854Cleavage; by 3CL-PRO
 1-330Betacoronavirus NSP1
IPR022570PF11963
 646-809Non-structural protein 2, C-terminal domain, coronavirus
IPR043613PF19212
 1094-1342Peptidase C30/C16, Betacoronavirus
IPR002705PF01831
 1354-1458Macro domain
IPR002589PF01661
 1619-1921Peptidase C16, coronavirus
IPR013016PF08715
 1956-2072Non-structural protein NSP3, nucleic acid-binding (NAR) domain, betacoronavirus
IPR032592PF16251
 2308-2793Coronavirus replicase NSP3, C-terminal
IPR043611PF19218
 2830-3186Coronavirus replicase NSP4, N-terminal
IPR043612PF19217
 3215-3302Non-structural protein NSP4, C-terminal, coronavirus
IPR032505PF16348
 3333-3620Peptidase C30, coronavirus
IPR008740PF05409
 3635-3894Non-structural protein 6, coronavirus
IPR043610PF19213
 3895-3983Non-structural protein NSP7, coronavirus
IPR014828PF08716
 3984-4174Non-structural protein NSP8, coronavirus-like
IPR014829PF08717
 4181-4290Non-structural protein NSP9, coronavirus
IPR014822PF08710
 4299-4419RNA synthesis protein NSP10, coronavirus
IPR018995PF09401
 4441-4789RNA polymerase, N-terminal, coronaviral
IPR009469PF06478
 4822-5312RNA-directed RNA polymerase, C-terminal domain
IPR001205PF00680
 5788-5929DNA2/NAM7 helicase-like, C-terminal
IPR041679PF13087
 5960-6476Non-structural protein 14, coronavirus
IPR009466PF06471
 6480-6540Coronavirus replicase NSP15, N-terminal oligomerisation
IPR043606PF19219
 6550-6641Coronavirus replicase NSP15, middle domain
IPR043608PF19216
 6699-6851NendoU domain, nidovirus
IPR043609PF19215
 6856-7151Non-structural protein NSP16, coronavirus-like
IPR009461PF06460

Sequence Alignments

Papain-like proteinase 810-2808; PRO_0000297775

Oligo-stateLigandsQMEANTemplateRangeSeq id (%)
monomer ZN;-1.014ypt.1.A1544-1921
64.25
Assess

3C-like proteinase 3305-3607; PRO_0000297777

Oligo-stateLigandsQMEANTemplateRangeSeq id (%)
monomer 02J;-1.213d23.1.A3305-3604
98.67
Assess

RNA-directed RNA polymerase 4428-5355; PRO_0000297783

Oligo-stateLigandsQMEANTemplateRangeSeq id (%)
monomer ZN;-1.917c2k.1.A4428-5352
67.31
Assess

Guanine-N7 methyltransferase 5959-6479; PRO_0000297785

Oligo-stateLigandsQMEANTemplateRangeSeq id (%)
monomer ZN;-4.375nfy.1.A5959-6477
57.97
Assess

Uridylate-specific endoribonuclease 6480-6853; PRO_0000297786

Oligo-stateLigandsQMEANTemplateRangeSeq id (%)
monomer -2.612gth.1.A6480-6848
77.51
Assess

2'-O-methyltransferase 6854-7152; PRO_0000297787

Oligo-stateLigandsQMEANTemplateRangeSeq id (%)
monomer SAM;-2.416wks.1.A6854-7150
63.97
Assess