P0C6X4 (R1AB_CVHN5) Human coronavirus HKU1 (isolate N5) (HCoV-HKU1)
Replicase polyprotein 1ab UniProtKBInterProInteractive Modelling
7132 aa; Sequence (Fasta)
Molecule Processing
| Host translation inhibitor nsp1 | |
| Non-structural protein 2 | |
| Papain-like proteinase | |
| Non-structural protein 4 | |
| 3C-like proteinase | |
| Non-structural protein 6 | |
| Non-structural protein 7 | |
| Non-structural protein 8 | |
| Non-structural protein 9 | |
| Non-structural protein 10 | |
| RNA-directed RNA polymerase | |
| Helicase | |
| Guanine-N7 methyltransferase | |
| Uridylate-specific endoribonuclease | |
| 2'-O-methyltransferase |
It is possible new templates exist for this target since these models were created.
Sequence Features
| 1111 | For PL1-PRO activity | ||
| 1262 | For PL1-PRO activity | ||
| 1707 | For PL2-PRO activity | ||
| 1864 | For PL2-PRO activity | ||
| 3325 | For 3CL-PRO activity | ||
| 3429 | For 3CL-PRO activity | ||
| 5340 | Zinc 1 | ||
| 5343 | Zinc 1 | ||
| 5351 | Zinc 2 | ||
| 5354 | Zinc 1 | ||
| 5361 | Zinc 1 | ||
| 5364 | Zinc 2 | ||
| 5368 | Zinc 2 | ||
| 5374 | Zinc 2 | ||
| 5385 | Zinc 3 | ||
| 5390 | Zinc 3 | ||
| 5407 | Zinc 3 | ||
| 5410 | Zinc 3 | ||
| 2176-2196 | Helical | ||
| 2237-2257 | Helical | ||
| 2268-2288 | Helical | ||
| 2351-2371 | Helical | ||
| 2393-2413 | Helical | ||
| 2794-2814 | Helical | ||
| 3069-3089 | Helical | ||
| 3101-3121 | Helical | ||
| 3128-3148 | Helical | ||
| 3153-3173 | Helical | ||
| 3601-3621 | Helical | ||
| 3626-3646 | Helical | ||
| 3651-3671 | Helical | ||
| 3694-3714 | Helical | ||
| 3722-3742 | Helical | ||
| 3750-3770 | Helical | ||
| 3793-3813 | Helical | ||
| 1188-1216 | C4-type 1 | ||
| 1785-1821 | C4-type 2 | ||
| 4344-4360 | |||
| 4386-4399 | |||
| 5616-5623 | ATP | ||
| 222-223 | Cleavage; by PL1-PRO | ||
| 809-810 | Cleavage; by PL1-PRO | ||
| 2788-2789 | Cleavage; by PL2-PRO | ||
| 3284-3285 | Cleavage; by 3CL-PRO | ||
| 3587-3588 | Cleavage; by 3CL-PRO | ||
| 3874-3875 | Cleavage; by 3CL-PRO | ||
| 3966-3967 | Cleavage; by 3CL-PRO | ||
| 4160-4161 | Cleavage; by 3CL-PRO | ||
| 4270-4271 | Cleavage; by 3CL-PRO | ||
| 4407-4408 | Cleavage; by 3CL-PRO | ||
| 5335-5336 | Cleavage; by 3CL-PRO | ||
| 6459-6460 | Cleavage; by 3CL-PRO | ||
| 6833-6834 | Cleavage; by 3CL-PRO | ||
| 1-330 | Betacoronavirus NSP1 IPR022570PF11963 | ||
| 646-808 | Non-structural protein 2, C-terminal domain, coronavirus IPR043613PF19212 | ||
| 1074-1322 | Peptidase C30/C16, Betacoronavirus IPR002705PF01831 | ||
| 1334-1438 | Macro domain IPR002589PF01661 | ||
| 1599-1901 | Peptidase C16, coronavirus IPR013016PF08715 | ||
| 1936-2052 | Non-structural protein NSP3, nucleic acid-binding (NAR) domain, betacoronavirus IPR032592PF16251 | ||
| 2288-2773 | Coronavirus replicase NSP3, C-terminal IPR043611PF19218 | ||
| 2810-3166 | Coronavirus replicase NSP4, N-terminal IPR043612PF19217 | ||
| 3195-3282 | Non-structural protein NSP4, C-terminal, coronavirus IPR032505PF16348 | ||
| 3313-3600 | Peptidase C30, coronavirus IPR008740PF05409 | ||
| 3615-3874 | Non-structural protein 6, coronavirus IPR043610PF19213 | ||
| 3875-3963 | Non-structural protein NSP7, coronavirus IPR014828PF08716 | ||
| 3964-4154 | Non-structural protein NSP8, coronavirus-like IPR014829PF08717 | ||
| 4161-4270 | Non-structural protein NSP9, coronavirus IPR014822PF08710 | ||
| 4279-4399 | RNA synthesis protein NSP10, coronavirus IPR018995PF09401 | ||
| 4421-4769 | RNA polymerase, N-terminal, coronaviral IPR009469PF06478 | ||
| 4802-5292 | RNA-directed RNA polymerase, C-terminal domain IPR001205PF00680 | ||
| 5768-5909 | DNA2/NAM7 helicase-like, C-terminal IPR041679PF13087 | ||
| 5940-6456 | Non-structural protein 14, coronavirus IPR009466PF06471 | ||
| 6460-6520 | Coronavirus replicase NSP15, N-terminal oligomerisation IPR043606PF19219 | ||
| 6530-6621 | Coronavirus replicase NSP15, middle domain IPR043608PF19216 | ||
| 6679-6831 | NendoU domain, nidovirus IPR043609PF19215 | ||
| 6836-7131 | Non-structural protein NSP16, coronavirus-like IPR009461PF06460 |
Sequence Alignments
Papain-like proteinase 810-2788; PRO_0000297790
| Oligo-state | Ligands | QMEAN | Template | Range | Seq id (%) |
|---|---|---|---|---|---|
| monomer | 1×ZN; | -1.02 | 4ypt.1.A | 64.25 | |
| Assess | |||||
3C-like proteinase 3285-3587; PRO_0000297792
| Oligo-state | Ligands | QMEAN | Template | Range | Seq id (%) |
|---|---|---|---|---|---|
| monomer | 1×02J; | -1.24 | 3d23.1.A | 98.00 | |
| Assess | |||||
RNA-directed RNA polymerase 4408-5335; PRO_0000297798
| Oligo-state | Ligands | QMEAN | Template | Range | Seq id (%) |
|---|---|---|---|---|---|
| monomer | 2×ZN; | -1.78 | 7c2k.1.A | 67.31 | |
| Assess | |||||
Guanine-N7 methyltransferase 5939-6459; PRO_0000297800
| Oligo-state | Ligands | QMEAN | Template | Range | Seq id (%) |
|---|---|---|---|---|---|
| monomer | 1×ZN; | -4.19 | 5nfy.1.A | 57.92 | |
| Assess | |||||
Uridylate-specific endoribonuclease 6460-6833; PRO_0000297801
| Oligo-state | Ligands | QMEAN | Template | Range | Seq id (%) |
|---|---|---|---|---|---|
| monomer | -2.31 | 2gth.1.A | 76.42 | ||
| Assess | |||||