P0C6X4 (R1AB_CVHN5) Human coronavirus HKU1 (isolate N5) (HCoV-HKU1)

Replicase polyprotein 1ab UniProtKBInterProInteractive Modelling

7132 aa; Sequence (Fasta)

Molecule Processing
Host translation inhibitor nsp1
Non-structural protein 2
Papain-like proteinase
Non-structural protein 4
3C-like proteinase
Non-structural protein 6
Non-structural protein 7
Non-structural protein 8
Non-structural protein 9
Non-structural protein 10
RNA-directed RNA polymerase
Helicase
Guanine-N7 methyltransferase
Uridylate-specific endoribonuclease
2'-O-methyltransferase

Sequence Features

Add
 1111For PL1-PRO activity
 1262For PL1-PRO activity
 1707For PL2-PRO activity
 1864For PL2-PRO activity
 3325For 3CL-PRO activity
 3429For 3CL-PRO activity
 5340Zinc 1
 5343Zinc 1
 5351Zinc 2
 5354Zinc 1
 5361Zinc 1
 5364Zinc 2
 5368Zinc 2
 5374Zinc 2
 5385Zinc 3
 5390Zinc 3
 5407Zinc 3
 5410Zinc 3
 2176-2196Helical
 2237-2257Helical
 2268-2288Helical
 2351-2371Helical
 2393-2413Helical
 2794-2814Helical
 3069-3089Helical
 3101-3121Helical
 3128-3148Helical
 3153-3173Helical
 3601-3621Helical
 3626-3646Helical
 3651-3671Helical
 3694-3714Helical
 3722-3742Helical
 3750-3770Helical
 3793-3813Helical
 1188-1216C4-type 1
 1785-1821C4-type 2
 4344-4360
 4386-4399
 5616-5623ATP
 222-223Cleavage; by PL1-PRO
 809-810Cleavage; by PL1-PRO
 2788-2789Cleavage; by PL2-PRO
 3284-3285Cleavage; by 3CL-PRO
 3587-3588Cleavage; by 3CL-PRO
 3874-3875Cleavage; by 3CL-PRO
 3966-3967Cleavage; by 3CL-PRO
 4160-4161Cleavage; by 3CL-PRO
 4270-4271Cleavage; by 3CL-PRO
 4407-4408Cleavage; by 3CL-PRO
 5335-5336Cleavage; by 3CL-PRO
 6459-6460Cleavage; by 3CL-PRO
 6833-6834Cleavage; by 3CL-PRO
 1-330Betacoronavirus NSP1
IPR022570PF11963
 646-808Non-structural protein 2, C-terminal domain, coronavirus
IPR043613PF19212
 1074-1322Peptidase C30/C16, Betacoronavirus
IPR002705PF01831
 1334-1438Macro domain
IPR002589PF01661
 1599-1901Peptidase C16, coronavirus
IPR013016PF08715
 1936-2052Non-structural protein NSP3, nucleic acid-binding (NAR) domain, betacoronavirus
IPR032592PF16251
 2288-2773Coronavirus replicase NSP3, C-terminal
IPR043611PF19218
 2810-3166Coronavirus replicase NSP4, N-terminal
IPR043612PF19217
 3195-3282Non-structural protein NSP4, C-terminal, coronavirus
IPR032505PF16348
 3313-3600Peptidase C30, coronavirus
IPR008740PF05409
 3615-3874Non-structural protein 6, coronavirus
IPR043610PF19213
 3875-3963Non-structural protein NSP7, coronavirus
IPR014828PF08716
 3964-4154Non-structural protein NSP8, coronavirus-like
IPR014829PF08717
 4161-4270Non-structural protein NSP9, coronavirus
IPR014822PF08710
 4279-4399RNA synthesis protein NSP10, coronavirus
IPR018995PF09401
 4421-4769RNA polymerase, N-terminal, coronaviral
IPR009469PF06478
 4802-5292RNA-directed RNA polymerase, C-terminal domain
IPR001205PF00680
 5768-5909DNA2/NAM7 helicase-like, C-terminal
IPR041679PF13087
 5940-6456Non-structural protein 14, coronavirus
IPR009466PF06471
 6460-6520Coronavirus replicase NSP15, N-terminal oligomerisation
IPR043606PF19219
 6530-6621Coronavirus replicase NSP15, middle domain
IPR043608PF19216
 6679-6831NendoU domain, nidovirus
IPR043609PF19215
 6836-7131Non-structural protein NSP16, coronavirus-like
IPR009461PF06460

Sequence Alignments

Papain-like proteinase 810-2788; PRO_0000297790

Oligo-stateLigandsQMEANTemplateRangeSeq id (%)
monomer ZN;-1.024ypt.1.A1524-1901
64.25
Assess

3C-like proteinase 3285-3587; PRO_0000297792

Oligo-stateLigandsQMEANTemplateRangeSeq id (%)
monomer 02J;-1.243d23.1.A3285-3584
98.00
Assess

RNA-directed RNA polymerase 4408-5335; PRO_0000297798

Oligo-stateLigandsQMEANTemplateRangeSeq id (%)
monomer ZN;-1.787c2k.1.A4408-5332
67.31
Assess

Guanine-N7 methyltransferase 5939-6459; PRO_0000297800

Oligo-stateLigandsQMEANTemplateRangeSeq id (%)
monomer ZN;-4.195nfy.1.A5941-6457
57.92
Assess

Uridylate-specific endoribonuclease 6460-6833; PRO_0000297801

Oligo-stateLigandsQMEANTemplateRangeSeq id (%)
monomer -2.312gth.1.A6460-6828
76.42
Assess