P0C6Y2 (R1AB_IBVBC) Avian infectious bronchitis virus (strain Beaudette CK) (IBV)
Replicase polyprotein 1ab UniProtKBInterProInteractive Modelling
6629 aa; Sequence (Fasta)
Molecule Processing
| Non-structural protein 2 | |
| Non-structural protein 3 | |
| Non-structural protein 4 | |
| 3C-like proteinase | |
| Non-structural protein 6 | |
| Non-structural protein 7 | |
| Non-structural protein 8 | |
| Non-structural protein 9 | |
| Non-structural protein 10 | |
| RNA-directed RNA polymerase | |
| Helicase | |
| Exoribonuclease | |
| Uridylate-specific endoribonuclease | |
| Putative 2'-O-methyl transferase |
It is possible new templates exist for this target since these models were created.
Sequence Features
| 1274 | For PL-PRO activity | ||
| 1437 | For PL-PRO activity | ||
| 2820 | For 3CL-PRO activity | ||
| 2922 | For 3CL-PRO activity | ||
| 4873 | Zinc 1 | ||
| 4876 | Zinc 1 | ||
| 4884 | Zinc 2 | ||
| 4887 | Zinc 1 | ||
| 4894 | Zinc 1 | ||
| 4897 | Zinc 2 | ||
| 4901 | Zinc 2 | ||
| 4907 | Zinc 2 | ||
| 4918 | Zinc 3 | ||
| 4923 | Zinc 3 | ||
| 4940 | Zinc 3 | ||
| 4943 | Zinc 3 | ||
| 1721-1741 | Helical | ||
| 1751-1771 | Helical | ||
| 1844-1864 | Helical | ||
| 1869-1888 | Helical | ||
| 2281-2301 | Helical | ||
| 2560-2580 | Helical | ||
| 2589-2609 | Helical | ||
| 2612-2632 | Helical | ||
| 2644-2664 | Helical | ||
| 3101-3121 | Helical | ||
| 3122-3142 | Helical | ||
| 3152-3172 | Helical | ||
| 3189-3209 | Helical | ||
| 3220-3240 | Helical | ||
| 3258-3278 | Helical | ||
| 3297-3317 | Helical | ||
| 1353-1390 | C4-type | ||
| 3858-3878 | |||
| 3904-3917 | |||
| 5150-5157 | ATP | ||
| 673-674 | Cleavage; by PL-PRO | ||
| 2265-2266 | Cleavage; by PL-PRO | ||
| 2779-2780 | Cleavage; by 3CL-PRO | ||
| 3086-3087 | Cleavage; by 3CL-PRO | ||
| 3379-3380 | Cleavage; by 3CL-PRO | ||
| 3462-3463 | Cleavage; by 3CL-PRO | ||
| 3672-3673 | Cleavage; by 3CL-PRO | ||
| 3783-3784 | Cleavage; by 3CL-PRO | ||
| 3928-3929 | Cleavage; by 3CL-PRO | ||
| 4868-4869 | Cleavage; by 3CL-PRO | ||
| 5468-5469 | Cleavage; by 3CL-PRO | ||
| 5989-5990 | Cleavage; by 3CL-PRO | ||
| 6327-6328 | Cleavage; by 3CL-PRO | ||
| 14-371 | Non-structural protein 2, gammacoronavirus IPR040795PF17896 | ||
| 1040-1145 | Macro domain IPR002589PF01661 | ||
| 1174-1482 | Peptidase C16, coronavirus IPR013016PF08715 | ||
| 1783-2248 | Coronavirus replicase NSP3, C-terminal IPR043611PF19218 | ||
| 2305-2656 | Coronavirus replicase NSP4, N-terminal IPR043612PF19217 | ||
| 2684-2776 | Non-structural protein NSP4, C-terminal, coronavirus IPR032505PF16348 | ||
| 2808-3096 | Peptidase C30, coronavirus IPR008740PF05409 | ||
| 3113-3379 | Non-structural protein 6, coronavirus IPR043610PF19213 | ||
| 3381-3462 | Non-structural protein NSP7, coronavirus IPR014828PF08716 | ||
| 3463-3667 | Non-structural protein NSP8, coronavirus-like IPR014829PF08717 | ||
| 3673-3783 | Non-structural protein NSP9, coronavirus IPR014822PF08710 | ||
| 3796-3918 | RNA synthesis protein NSP10, coronavirus IPR018995PF09401 | ||
| 3947-4303 | RNA polymerase, N-terminal, coronaviral IPR009469PF06478 | ||
| 4338-4824 | RNA-directed RNA polymerase, C-terminal domain IPR001205PF00680 | ||
| 5148-5444 | (+) RNA virus helicase core domain IPR027351PF01443 | ||
| 5469-5986 | Non-structural protein 14, coronavirus IPR009466PF06471 | ||
| 5990-6050 | Coronavirus replicase NSP15, N-terminal oligomerisation IPR043606PF19219 | ||
| 6060-6149 | Coronavirus replicase NSP15, middle domain IPR043608PF19216 | ||
| 6171-6325 | NendoU domain, nidovirus IPR043609PF19215 | ||
| 6328-6628 | Non-structural protein NSP16, coronavirus-like IPR009461PF06460 |
Sequence Alignments
Non-structural protein 2 1-673; PRO_0000037418
| Oligo-state | Ligands | QMEAN | Template | Range | Seq id (%) |
|---|---|---|---|---|---|
| monomer | -2.75 | 3ld1.1.A | 92.74 | ||
| Assess | |||||
Non-structural protein 3 674-2265; PRO_0000037419
| Oligo-state | Ligands | QMEAN | Template | Range | Seq id (%) |
|---|---|---|---|---|---|
| monomer | 1×ZN; | -1.05 | 4x2z.1.A | 100.00 | |
| Assess | |||||
| monomer | 1×ZN; | -1.45 | 5bz0.1.A | 99.68 | |
| Assess | |||||
3C-like proteinase 2780-3086; PRO_0000037421
| Oligo-state | Ligands | QMEAN | Template | Range | Seq id (%) |
|---|---|---|---|---|---|
| monomer | -0.09 | 2q6d.2.A | 94.79 | ||
| Assess | |||||
RNA-directed RNA polymerase 3929-4868; PRO_0000037427
| Oligo-state | Ligands | QMEAN | Template | Range | Seq id (%) |
|---|---|---|---|---|---|
| monomer | 2×ZN; | -2.08 | 7c2k.1.A | 62.89 | |
| Assess | |||||
Helicase 4869-5468; PRO_0000037428
| Oligo-state | Ligands | QMEAN | Template | Range | Seq id (%) |
|---|---|---|---|---|---|
| monomer | 2×ZN; | -4.99 | 6jyt.1.A | 59.35 | |
| Assess | |||||
Exoribonuclease 5469-5989; PRO_0000037429
| Oligo-state | Ligands | QMEAN | Template | Range | Seq id (%) |
|---|---|---|---|---|---|
| monomer | 2×ZN; | -3.73 | 5nfy.3.A | 52.90 | |
| Assess | |||||
Uridylate-specific endoribonuclease 5990-6327; PRO_0000037430
| Oligo-state | Ligands | QMEAN | Template | Range | Seq id (%) |
|---|---|---|---|---|---|
| monomer | -3.04 | 2rhb.1.A | 42.17 | ||
| Assess | |||||