P0C6Y2 (R1AB_IBVBC) Avian infectious bronchitis virus (strain Beaudette CK) (IBV)

Replicase polyprotein 1ab UniProtKBInterProInteractive Modelling

6629 aa; Sequence (Fasta)

Molecule Processing
Non-structural protein 2
Non-structural protein 3
Non-structural protein 4
3C-like proteinase
Non-structural protein 6
Non-structural protein 7
Non-structural protein 8
Non-structural protein 9
Non-structural protein 10
RNA-directed RNA polymerase
Helicase
Exoribonuclease
Uridylate-specific endoribonuclease
Putative 2'-O-methyl transferase

Sequence Features

Add
 1274For PL-PRO activity
 1437For PL-PRO activity
 2820For 3CL-PRO activity
 2922For 3CL-PRO activity
 4873Zinc 1
 4876Zinc 1
 4884Zinc 2
 4887Zinc 1
 4894Zinc 1
 4897Zinc 2
 4901Zinc 2
 4907Zinc 2
 4918Zinc 3
 4923Zinc 3
 4940Zinc 3
 4943Zinc 3
 1721-1741Helical
 1751-1771Helical
 1844-1864Helical
 1869-1888Helical
 2281-2301Helical
 2560-2580Helical
 2589-2609Helical
 2612-2632Helical
 2644-2664Helical
 3101-3121Helical
 3122-3142Helical
 3152-3172Helical
 3189-3209Helical
 3220-3240Helical
 3258-3278Helical
 3297-3317Helical
 1353-1390C4-type
 3858-3878
 3904-3917
 5150-5157ATP
 673-674Cleavage; by PL-PRO
 2265-2266Cleavage; by PL-PRO
 2779-2780Cleavage; by 3CL-PRO
 3086-3087Cleavage; by 3CL-PRO
 3379-3380Cleavage; by 3CL-PRO
 3462-3463Cleavage; by 3CL-PRO
 3672-3673Cleavage; by 3CL-PRO
 3783-3784Cleavage; by 3CL-PRO
 3928-3929Cleavage; by 3CL-PRO
 4868-4869Cleavage; by 3CL-PRO
 5468-5469Cleavage; by 3CL-PRO
 5989-5990Cleavage; by 3CL-PRO
 6327-6328Cleavage; by 3CL-PRO
 14-371Non-structural protein 2, gammacoronavirus
IPR040795PF17896
 1040-1145Macro domain
IPR002589PF01661
 1174-1482Peptidase C16, coronavirus
IPR013016PF08715
 1783-2248Coronavirus replicase NSP3, C-terminal
IPR043611PF19218
 2305-2656Coronavirus replicase NSP4, N-terminal
IPR043612PF19217
 2684-2776Non-structural protein NSP4, C-terminal, coronavirus
IPR032505PF16348
 2808-3096Peptidase C30, coronavirus
IPR008740PF05409
 3113-3379Non-structural protein 6, coronavirus
IPR043610PF19213
 3381-3462Non-structural protein NSP7, coronavirus
IPR014828PF08716
 3463-3667Non-structural protein NSP8, coronavirus-like
IPR014829PF08717
 3673-3783Non-structural protein NSP9, coronavirus
IPR014822PF08710
 3796-3918RNA synthesis protein NSP10, coronavirus
IPR018995PF09401
 3947-4303RNA polymerase, N-terminal, coronaviral
IPR009469PF06478
 4338-4824RNA-directed RNA polymerase, C-terminal domain
IPR001205PF00680
 5148-5444(+) RNA virus helicase core domain
IPR027351PF01443
 5469-5986Non-structural protein 14, coronavirus
IPR009466PF06471
 5990-6050Coronavirus replicase NSP15, N-terminal oligomerisation
IPR043606PF19219
 6060-6149Coronavirus replicase NSP15, middle domain
IPR043608PF19216
 6171-6325NendoU domain, nidovirus
IPR043609PF19215
 6328-6628Non-structural protein NSP16, coronavirus-like
IPR009461PF06460

Sequence Alignments

Non-structural protein 2 1-673; PRO_0000037418

Oligo-stateLigandsQMEANTemplateRangeSeq id (%)
monomer -2.753ld1.1.A14-371
92.74
Assess

Non-structural protein 3 674-2265; PRO_0000037419

Oligo-stateLigandsQMEANTemplateRangeSeq id (%)
monomer ZN;-1.054x2z.1.A1177-1477
100.00
Assess
monomer ZN;-1.455bz0.1.A1230-1477
99.68
Assess

3C-like proteinase 2780-3086; PRO_0000037421

Oligo-stateLigandsQMEANTemplateRangeSeq id (%)
monomer -0.092q6d.2.A2785-3086
94.79
Assess

RNA-directed RNA polymerase 3929-4868; PRO_0000037427

Oligo-stateLigandsQMEANTemplateRangeSeq id (%)
monomer ZN;-2.087c2k.1.A3933-4865
62.89
Assess

Helicase 4869-5468; PRO_0000037428

Oligo-stateLigandsQMEANTemplateRangeSeq id (%)
monomer ZN;-4.996jyt.1.A4871-5462
59.35
Assess

Exoribonuclease 5469-5989; PRO_0000037429

Oligo-stateLigandsQMEANTemplateRangeSeq id (%)
monomer ZN;-3.735nfy.3.A5470-5987
52.90
Assess

Uridylate-specific endoribonuclease 5990-6327; PRO_0000037430

Oligo-stateLigandsQMEANTemplateRangeSeq id (%)
monomer -3.042rhb.1.A5990-6325
42.17
Assess