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P0CH09 (RL40B_YEAST) Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)

Ubiquitin-ribosomal protein eL40B fusion protein UniProtKBInterProInteractive Modelling

128 aa; Sequence (Fasta) ; 13 identical sequences

Available Structures

41 Experimental Structures

DescriptionPDB IDOligo-stateRangeLigands
Crystal structure of a human Cdc34-ubiquitin thioester mimetic Heteromer
P0CH08; Q712K3;
1-76
U94;EDO;PO4;
Assess
Cryo-EM structure of native Otu2-bound ubiquitinated 43S pre-initiation complex Heteromer
O13516; P02407; P05750; P05756; P05759; P06103; P06367; P07280; P0C0V8; P0C0W1; P0CH08; P0CX29; P0CX31; P0CX33; P0CX36; P0CX38; P0CX39; P0CX47; P0CX51; P0CX55; P0CX86; P25443; P26783; P26786; P32497; P32905; P32911; P33442; P35997; P38011; P38249; P38701; P38747; P38912; P39938; P40217; P41057; P48589; Q01855; Q03195; Q04067; Q05775; Q08745; Q3E792; Q3E7X9;
1-76
80×MG;ZN;SF4;ADP;
Assess
Saccharomyces cerevisiae Ufd1/Npl4/Cdc48 complex bound to two ubiquitin moieties in presence of SUM… Heteromer
P0CH08; P25694; P33755; P53044;
1-76
ATP;ADP;ZN;
Assess
Cryo-EM structure of native Otu2-bound ubiquitinated 48S initiation complex (partial) Heteromer
O13516; P02407; P05750; P05756; P05759; P06103; P06367; P07280; P09064; P0C0V8; P0C0W1; P0CH08; P0CX29; P0CX31; P0CX33; P0CX36; P0CX38; P0CX39; P0CX47; P0CX51; P0CX55; P0CX86; P20459; P25443; P26783; P26786; P32481; P32497; P32905; P33442; P35997; P38011; P38249; P38431; P38701; P38747; P38912; P39938; P40217; P41057; P48589; Q01855; Q03195; Q04067; Q08745; Q3E792; Q3E7X9;
1-76
ZN;ADP;MG;ATP;SF4;MET;GCP;
Assess
Cdc48-Npl4 complex processing poly-ubiquitinated substrate in the presence of ATP Heteromer
P0CH08; P25694; P33755;
1-76
ATP;ADP;ZN;
Assess
Crystal structure of an effector from Chromobacterium violaceum in complex with ubiquitin Heteromer
P0CH08; Q7NY09;
1-75
Assess
Set2 bound to nucleosome Heteromer
G0S676; P02281; P02302; P06897; P62799;
1-75
ZN;
Assess
Yeast 26S proteasome bound to ubiquitinated substrate (4D motor state) Heteromer
P07818; P0CH08; P21242; P21243; P22141; P23638; P23639; P23724; P25043; P25451; P30656; P30657; P32379; P33297; P33298; P33299; P38624; P40302; P40303; P40327; P43588; P53549; Q01939;
2-76
ATP;ADP;
Assess
Crystal structure of an effector mutant in complex with ubiquitin Heteromer
P0CH08; Q7NY09;
1-72
SO4;GOL;NCA;AR6;
Assess
Yeast RQC complex in state F Heteromer
P02406; P04449; P04456; P04650; P05317; P05737; P05738; P05739; P05740; P05743; P05744; P05745; P05747; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CH08; P0CX23; P0CX25; P0CX27; P0CX41; P0CX43; P0CX45; P0CX49; P0CX53; P0CX82; P0CX84; P0CX86; P10664; P14120; P14126; P17076; P23301; P26321; P26784; P36105; P38061; P41805; P49166; P49167; P87262; Q02753; Q04781; Q12522; Q12532; Q12690;
77-128
13×MG;ZN;
Assess
Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles Heteromer
P02406; P04449; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05747; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CH08; P0CX23; P0CX25; P0CX27; P0CX41; P0CX45; P0CX49; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P26321; P26785; P36105; P38061; P41805; P49166; P49167; P87262; Q02326; Q02753; Q06709; Q12522; Q12690;
77-128
ZN;
Assess
Yeast Vms1 (Q295L)-60S ribosomal subunit complex (pre-state with Arb1) Heteromer
P02406; P04449; P04456; P04650; P05317; P05737; P05738; P05740; P05743; P05744; P05745; P05747; P05748; P05749; P0C2H6; P0C2H8; P0CH08; P0CX23; P0CX25; P0CX27; P0CX41; P0CX43; P0CX45; P0CX49; P0CX53; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P26321; P26784; P36105; P38061; P40024; P41805; P49166; P49167; P87262; Q02326; Q02753; Q04311; Q12522; Q12690; Q3E757;
77-128
ZN;
Assess
Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles Heteromer
P02406; P04449; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05747; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CH08; P0CX23; P0CX25; P0CX27; P0CX41; P0CX45; P0CX49; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P26321; P26785; P36105; P38061; P38861; P41805; P49166; P49167; P53145; P87262; Q02326; Q02753; Q06709; Q12522; Q12690;
77-128
ZN;
Assess
Structure of a yeast 80S ribosome-bound N-Acetyltransferase B complex Heteromer
P02406; P04449; P04456; P04650; P05737; P05738; P05739; P05740; P05743; P05744; P05745; P05747; P05748; P05749; P0C2H6; P0C2H8; P0CH08; P0CX23; P0CX25; P0CX27; P0CX41; P0CX45; P0CX49; P0CX82; P0CX84; P0CX86; P10664; P14120; P14126; P17076; P26321; P26784; P36105; P38061; P41805; P49166; P49167; P87262; Q02753; Q06504; Q12387; Q12690; Q3E757;
77-128
206×MG;ZN;
Assess
Structure of a yeast 80S ribosome-bound N-Acetyltransferase B complex Heteromer
P02406; P04449; P04456; P04650; P05737; P05738; P05739; P05740; P05743; P05744; P05745; P05747; P05748; P05749; P0C2H6; P0C2H8; P0CH08; P0CX23; P0CX25; P0CX27; P0CX41; P0CX45; P0CX49; P0CX82; P0CX84; P0CX86; P10664; P14120; P14126; P17076; P26321; P26784; P36105; P38061; P41805; P49166; P49167; P87262; Q02753; Q06504; Q12387; Q12690; Q3E757;
77-128
206×MG;ZN;
Assess
Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20 Heteromer
A0A6A5PUL8; A0A6A5PUZ5; A0A6A5PWR1; A0A6A5PY83; A0A6A5Q0W8; A0A6A5Q1M9; A0A6A5Q3W0; A0A6A5Q627; A0A6A5Q7I9; A7H9Z6; P02406; P04456; P04650; P05317; P05737; P05738; P05740; P05743; P05744; P05745; P05748; P05749; P0C2H6; P0C2H8; P0CH08; P0CX23; P0CX25; P0CX27; P0CX41; P0CX45; P0CX49; P0CX82; P0CX84; P0CX86; P14120; P17076; P26784; P36105; P49166; P87262; Q02326; Q02753; Q12690;
77-128
ZN;
Assess
Yeast RQC complex in state G Heteromer
A0A6A5PUZ5; A0A6A5PWR1; A0A6A5Q0W8; A0A6A5Q275; A0A6A5Q627; P02406; P04449; P04456; P04650; P05317; P05737; P05738; P05739; P05740; P05743; P05744; P05745; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CH08; P0CX23; P0CX25; P0CX27; P0CX41; P0CX43; P0CX45; P0CX49; P0CX82; P0CX84; P0CX86; P10664; P14120; P17076; P23301; P26784; P36105; P38061; P49166; P49167; P87262; Q02753; Q04781; Q12522; Q12532; Q12690;
77-128
13×MG;ZN;SPD;
Assess
Context-specific inhibition of eukaryotic translation by macrolide antibiotics Heteromer
P02406; P04449; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05747; P05748; P05749; P0C2H6; P0C2H8; P0CH08; P0CX23; P0CX25; P0CX27; P0CX41; P0CX45; P0CX49; P0CX82; P0CX84; P10664; P14126; P17076; P26321; P26784; P36105; P38061; P41805; P49166; P49167; P87262; Q02326; Q02753; Q12690; Q3E757;
77-128
TEL;
Assess
Yeast Vms1 (Q295L)-60S ribosomal subunit complex (pre-state without Arb1) Heteromer
P02406; P04449; P04456; P04650; P05317; P05737; P05738; P05740; P05743; P05744; P05745; P05747; P05748; P05749; P0C2H6; P0C2H8; P0CH08; P0CX23; P0CX25; P0CX27; P0CX41; P0CX43; P0CX45; P0CX49; P0CX53; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P26321; P26784; P36105; P38061; P41805; P49166; P49167; P87262; Q02326; Q02753; Q04311; Q12522; Q12690; Q3E757;
77-128
ZN;
Assess
Structure of 60S ribosomal subunit from S. cerevisiae with eIF6 and tRNA Heteromer
P02406; P04449; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05747; P05748; P05749; P0C2H6; P0C2H8; P0CH08; P0CX23; P0CX25; P0CX27; P0CX41; P0CX45; P0CX49; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P26321; P26784; P36105; P38061; P41805; P49166; P49167; P87262; Q02326; Q02753; Q12522; Q12690; Q3E757;
77-128
23×UNK;MG;
Assess
Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and N-terminally tagged Rei1 Heteromer
P02406; P04449; P04456; P04650; P05317; P05737; P05738; P05740; P05743; P05744; P05745; P05747; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CH08; P0CX23; P0CX25; P0CX27; P0CX41; P0CX45; P0CX49; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P26321; P26784; P36105; P38061; P38344; P41805; P49166; P49167; P87262; Q02326; Q02753; Q03862; Q12690;
77-128
280×MG;ZN;
Assess
Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20 Heteromer
A0A6A5PUL8; A0A6A5PUZ5; A0A6A5PWR1; A0A6A5PY83; A0A6A5Q0W8; A0A6A5Q1M9; A0A6A5Q3W0; A0A6A5Q627; A0A6A5Q7I9; P02406; P04456; P04650; P05317; P05737; P05738; P05740; P05743; P05744; P05745; P05748; P05749; P0C2H6; P0C2H8; P0CH08; P0CX23; P0CX25; P0CX27; P0CX41; P0CX45; P0CX49; P0CX82; P0CX84; P0CX86; P14120; P17076; P26784; P36105; P49166; P87262; Q02326; Q02753; Q12690;
77-128
ZN;
Assess
Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles Heteromer
P02406; P04449; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05747; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CH08; P0CX23; P0CX25; P0CX27; P0CX41; P0CX45; P0CX49; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P26321; P26785; P36105; P38061; P38861; P49166; P49167; P53145; P87262; Q02326; Q02753; Q06709; Q12522; Q12690;
77-128
ZN;
Assess
Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles Heteromer
P02406; P04449; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05747; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CH08; P0CX23; P0CX25; P0CX27; P0CX41; P0CX45; P0CX49; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P26321; P26785; P36105; P38061; P38861; P41805; P49166; P49167; P53145; P87262; Q02326; Q02753; Q06709; Q12522; Q12690;
77-128
ZN;
Assess
Yeast RQC complex in state with the RING domain of Ltn1 in the OUT position Heteromer
A0A6A5PUZ5; A0A6A5PWR1; A0A6A5Q0W8; A0A6A5Q275; A0A6A5Q627; A0A8H4F709; P02406; P04449; P04456; P04650; P05317; P05737; P05738; P05739; P05740; P05743; P05744; P05745; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CH08; P0CX23; P0CX25; P0CX27; P0CX41; P0CX43; P0CX45; P0CX49; P0CX82; P0CX84; P0CX86; P10664; P14120; P17076; P23301; P26784; P36105; P38061; P49166; P49167; P87262; Q02753; Q04781; Q12522; Q12690;
77-128
13×MG;ZN;SPD;
Assess
Yeast RQC complex in state E Heteromer
A0A6A5PUL8; A0A6A5PUZ5; A0A6A5PWR1; A0A6A5Q0W8; A0A6A5Q275; A0A6A5Q3W0; A0A6A5Q627; A0A6A5Q7I9; A0A8H4F709; A0A8H8UMB4; P02406; P04449; P04456; P04650; P05317; P05737; P05738; P05739; P05740; P05743; P05744; P05745; P05748; P05749; P0C2H6; P0C2H8; P0CH08; P0CX23; P0CX25; P0CX27; P0CX41; P0CX43; P0CX45; P0CX49; P0CX82; P0CX84; P14120; P17076; P23301; P26784; P36105; P38061; P49166; P87262; Q02753; Q04781; Q12522; Q12690;
77-128
13×MG;ZN;SPD;
Assess
Yeast RQC complex in state D Heteromer
A0A6A5PUZ5; A0A6A5PWR1; A0A6A5Q0W8; A0A6A5Q627; A0A8H4F709; P02406; P04449; P04456; P04650; P05317; P05737; P05738; P05739; P05740; P05743; P05744; P05745; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CH08; P0CX23; P0CX25; P0CX27; P0CX41; P0CX43; P0CX45; P0CX49; P0CX53; P0CX82; P0CX84; P0CX86; P10664; P14120; P17076; P26784; P36105; P38061; P49166; P49167; P87262; Q02753; Q04781; Q12522; Q12690;
77-128
13×MG;ZN;SPD;
Assess
Yeast RQC complex in state with the RING domain of Ltn1 in the IN position Heteromer
P02406; P04449; P04456; P04650; P05317; P05737; P05738; P05739; P05740; P05743; P05744; P05745; P05747; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CH08; P0CX23; P0CX25; P0CX27; P0CX41; P0CX43; P0CX45; P0CX49; P0CX53; P0CX82; P0CX84; P0CX86; P10664; P14120; P14126; P17076; P23301; P26321; P26784; P36105; P38061; P41805; P49166; P49167; P87262; Q02753; Q04781; Q12532; Q12690;
77-128
13×MG;ZN;SPD;
Assess
Cryo-EM structure of the ribosome-NatA complex Heteromer
P02406; P04449; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05747; P05748; P05749; P07347; P0C0W9; P0C2H6; P0C2H8; P0CH08; P0CX23; P0CX25; P0CX27; P0CX41; P0CX45; P0CX49; P0CX82; P0CX84; P10664; P12945; P14120; P14126; P17076; P26321; P26784; P36105; P38061; P41805; P49166; P49167; P87262; Q02326; Q02753; Q08689; Q12690;
77-128
3HE;
Assess
Yeast Vms1-60S ribosomal subunit complex (post-state) Heteromer
P02406; P04449; P04456; P04650; P05317; P05737; P05738; P05740; P05743; P05744; P05745; P05747; P05748; P05749; P0C2H6; P0C2H8; P0CH08; P0CX23; P0CX25; P0CX27; P0CX41; P0CX43; P0CX45; P0CX49; P0CX53; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P26321; P26784; P36105; P38061; P41805; P49166; P49167; P87262; Q02326; Q02753; Q04311; Q12522; Q12690; Q3E757;
77-128
ZN;
Assess
Yeast RQC complex in state H Heteromer
A0A6A5PUZ5; A0A6A5PWR1; A0A6A5Q0W8; A0A6A5Q275; A0A6A5Q627; A0A8H4F709; P02406; P04449; P04456; P04650; P05317; P05737; P05738; P05739; P05740; P05743; P05744; P05745; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CH08; P0CX23; P0CX25; P0CX27; P0CX41; P0CX43; P0CX45; P0CX49; P0CX82; P0CX84; P0CX86; P10664; P14120; P17076; P23301; P26784; P36105; P38061; P49166; P49167; P87262; Q02753; Q04781; Q12522; Q12690;
77-128
13×MG;ZN;
Assess
Subunit joining exposes nascent pre-40S rRNA for processing and quality control Heteromer
P02406; P04449; P04456; P04650; P05317; P05737; P05738; P05740; P05743; P05744; P05745; P05747; P05748; P05749; P0C2H6; P0C2H8; P0CH08; P0CX23; P0CX25; P0CX27; P0CX41; P0CX43; P0CX45; P0CX49; P0CX53; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P26321; P26784; P36105; P38061; P41805; P49166; P49167; P87262; Q02326; Q02753; Q12690; Q3E757;
77-128
Assess
Yeast 60S ribosomal subunit with A-site tRNA, P-site tRNA and eIF-5A Heteromer
P02406; P04449; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05747; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CH08; P0CX23; P0CX25; P0CX27; P0CX41; P0CX45; P0CX49; P0CX82; P0CX84; P0CX86; P10664; P14120; P14126; P17076; P23301; P26321; P26784; P36105; P38061; P41805; P49166; P49167; P87262; Q02326; Q02753; Q12690;
77-128
3HE;
Assess
Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis… Heteromer
P02406; P04449; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05747; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CH08; P0CX23; P0CX25; P0CX27; P0CX41; P0CX45; P0CX49; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P26321; P26784; P36105; P38061; P38861; P41805; P49166; P49167; P53145; P87262; Q02326; Q02753; Q12522; Q12690;
77-128
160×MG;K;GNP;
Assess
Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and C-terminally tagged Rei1 Heteromer
P02406; P04449; P04456; P04650; P05317; P05737; P05738; P05740; P05743; P05744; P05745; P05747; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CH08; P0CX23; P0CX25; P0CX27; P0CX41; P0CX45; P0CX49; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P26321; P26784; P36105; P38061; P41805; P49166; P49167; P87262; Q02753; Q03862; Q12690;
77-128
280×MG;ZN;
Assess
Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis… Heteromer
P02406; P04449; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05747; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CH08; P0CX23; P0CX25; P0CX27; P0CX41; P0CX45; P0CX49; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P26321; P26784; P36105; P38061; P38861; P41805; P49166; P49167; P87262; Q02326; Q02753; Q12690;
77-128
86×MG;K;
Assess
Cryo-EM Structure of the 60S Ribosomal Subunit in Complex with Arx1 and Rei1 Heteromer
P02406; P04449; P04456; P04650; P05317; P05737; P05738; P05740; P05743; P05744; P05745; P05747; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CH08; P0CX23; P0CX25; P0CX27; P0CX41; P0CX45; P0CX49; P0CX82; P0CX84; P0CX86; P10664; P14120; P14126; P17076; P26321; P26784; P36105; P38061; P41805; P49166; P49167; P87262; Q02326; Q02753; Q12690;
77-128
ZN;
Assess
Cryo-EM structure of Lsg1-engaged (LE) pre-60S ribosomal subunit Heteromer
P02406; P04449; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05747; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CH08; P0CX23; P0CX25; P0CX27; P0CX41; P0CX45; P0CX49; P0CX53; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P26321; P26784; P36105; P38061; P38861; P49166; P49167; P53145; P87262; Q02256; Q02326; Q02753; Q12522; Q12690;
77-127
Assess
Cryo-EM structure of pre-Lsg1 (PL) pre-60S ribosomal subunit Heteromer
P02406; P04449; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05747; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CH08; P0CX23; P0CX25; P0CX27; P0CX41; P0CX45; P0CX49; P0CX53; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P26321; P26784; P36105; P38061; P38861; P49166; P49167; P87262; Q02256; Q02326; Q02753; Q12522; Q12690;
77-127
Assess
Cryo-EM structure of Rpl10-inserted (RI) pre-60S ribosomal subunit Heteromer
P02406; P04449; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05747; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CH08; P0CX23; P0CX25; P0CX27; P0CX41; P0CX45; P0CX49; P0CX53; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P26321; P26784; P36105; P38061; P38861; P41805; P49166; P49167; P53145; P87262; Q02256; Q02326; Q02753; Q12522; Q12690;
77-127
Assess
Cdc48-Npl4 complex processing poly-ubiquitinated substrate in the presence of ADP-BeFx, state 1 Heteromer
P0CH08; P25694; P33755;
2-49
ADP;BEF;
Assess

2 SWISS-MODEL models

TemplateOligo-stateQMEANDisCoRangeLigandsTrg-Tpl Seq id (%)
5hpl.1.Bmonomer0.751-77
88.31
Assess
6t7i.71.Amonomer0.6577-128
100.00
Assess