P34087 (RPB7_YEAST) Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
DNA-directed RNA polymerase II subunit RPB7 UniProtKBInterProSTRINGInteractive Modelling
171 aa; Sequence (Fasta) ;
12 identical sequences
It is possible new templates exist for this target since these models were created.
Available Structures
106 Experimental Structures
Description | PDB ID | Oligo-state | Range | Ligands | ||
---|---|---|---|---|---|---|
Crystal structure of yeast subcomplex of Rpb4 and Rpb7 |
Heteromer P20433; | |||||
Assess | ||||||
elongating RNA Polymerase II-Bye1 TLD complex |
Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P36106; P38902; P40422; | 8×ZN; 1×MG; 2×EPE; | ||||
Assess | ||||||
Complete RNA polymerase II elongation complex I with a T-U mismatch |
Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P38902; P40422; | 8×ZN; | ||||
Assess | ||||||
RNA polymerase II elongation complex in the presence of 3d-Napht-A |
Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P38902; P40422; | 8×ZN; 1×MG; 1×AHW; | ||||
Assess | ||||||
Arrested RNA polymerase II-Bye1 complex |
Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P36106; P38902; P40422; | 8×ZN; 1×MG; | ||||
Assess | ||||||
Arrested RNA Polymerase II elongation complex |
Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P38902; P40422; | 8×ZN; 1×MG; 1×ACT; 1×EPE; 1×PEG; | ||||
Assess | ||||||
Arrested RNA Polymerase II reactivation intermediate |
Heteromer P04050; P07273; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P38902; P40422; | 9×ZN; 1×MG; 2×ACT; 1×EPE; 1×PGE; | ||||
Assess | ||||||
RNA Polymerase II initial transcribing complex with a 6nt DNA-RNA hybrid |
Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P38902; P40422; | 8×ZN; 1×MG; | ||||
Assess | ||||||
Alpha-amanitin inhibited complete RNA polymerase II elongation complex |
Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P38902; P40422; P85421; | 8×ZN; 1×MG; | ||||
Assess | ||||||
Complete RNA polymerase II elongation complex VI |
Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P38902; P40422; | 8×ZN; 1×MG; | ||||
Assess | ||||||
RNA Polymerase II initial transcribing complex with a 5nt DNA-RNA hybrid and soaked with AMPCPP |
Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P38902; P40422; | 8×ZN; 1×MG; 1×APC; | ||||
Assess | ||||||
RNA Polymerase II elongation complex containing a CPD Lesion |
Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P38902; P40422; | 8×ZN; 1×MG; | ||||
Assess | ||||||
Structure of RNA polymerase II-TFIIB complex |
Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P38902; P40422; | 9×ZN; 2×MG; | ||||
Assess | ||||||
Complete RNA polymerase II elongation complex II |
Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P38902; P40422; | 8×ZN; 1×MG; | ||||
Assess | ||||||
RNA Polymerase II initial transcribing complex with a 2nt DNA-RNA hybrid |
Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P38902; P40422; | 8×ZN; 1×MG; | ||||
Assess | ||||||
RNA Polymerase II initial transcribing complex with a 4nt DNA-RNA hybrid |
Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P38902; P40422; | 8×ZN; 1×MG; | ||||
Assess | ||||||
RNA Polymerase II initial transcribing complex with a 5nt DNA-RNA hybrid |
Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P38902; P40422; | 8×ZN; 1×MG; | ||||
Assess | ||||||
RNA Polymerase II initial transcribing complex with a 7nt DNA-RNA hybrid |
Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P38902; P40422; | 8×ZN; 1×MG; | ||||
Assess | ||||||
RNA Polymerase II initial transcribing complex with a 6nt DNA-RNA hybrid and soaked with AMPCPP |
Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P38902; P40422; | 1×APC; 8×ZN; 1×MG; | ||||
Assess | ||||||
RNA Polymerase II initial transcribing complex with a 7nt DNA-RNA hybrid and soaked with AMPCPP |
Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P38902; P40422; | 8×ZN; 1×MG; 1×APC; | ||||
Assess | ||||||
Structure of RNA Polymerase II-Tfg1 peptide complex |
Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P38902; P40422; P41895; | 8×ZN; 1×MG; | ||||
Assess | ||||||
Structure of an initially transcribing RNA polymerase II-TFIIB complex |
Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P38902; P40422; | 9×ZN; 2×MG; | ||||
Assess | ||||||
Complete RNA polymerase II elongation complex III with a T-U mismatch and a frayed RNA 3'-uridine |
Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P38902; P40422; | 8×ZN; 1×MG; | ||||
Assess | ||||||
elongating RNA Polymerase II-Bye1 TLD complex soaked with AMPCPP |
Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P36106; P38902; P40422; | 8×ZN; 1×MG; 1×APC; | ||||
Assess | ||||||
Complete RNA polymerase II elongation complex IV with a T-U mismatch and a frayed RNA 3'-guanine |
Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P38902; P40422; | 8×ZN; 1×MG; | ||||
Assess | ||||||
Complete RNA polymerase II elongation complex V |
Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P38902; P40422; | 8×ZN; 1×MG; | ||||
Assess | ||||||
RNA Polymerase II initial transcribing complex with a 2nt DNA-RNA hybrid and soaked with GMPCPP |
Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P38902; P40422; | 8×ZN; 1×MG; 1×G2P; | ||||
Assess | ||||||
Crystal structure of a transcribing RNA Polymerase II complex reveals a complete transcription bubb… |
Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P38902; P40422; | 9×ZN; 2×MG; | ||||
Assess | ||||||
8-oxoguanine containing RNA polymerase II elongation complex D |
Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P38902; P40422; | 1×MG; 8×ZN; | ||||
Assess | ||||||
CPD lesion containing RNA Polymerase II elongation complex A |
Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P38902; P40422; | 1×MG; 8×ZN; | ||||
Assess | ||||||
CPD lesion containing RNA Polymerase II elongation complex C |
Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P38902; P40422; | 1×MG; 8×ZN; | ||||
Assess | ||||||
Complete RNA Polymerase II-RNA inhibitor complex |
Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P38902; P40422; | 8×ZN; 1×MG; | ||||
Assess | ||||||
CPD lesion containing RNA Polymerase II elongation complex D |
Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P38902; P40422; | 1×MG; 8×ZN; | ||||
Assess | ||||||
Cisplatin lesion containing RNA polymerase II elongation complex |
Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P38902; P40422; | 1×CPT; 8×ZN; 1×MG; | ||||
Assess | ||||||
12 Subunit RNA Polymerase II at Room Temperature collected using SFX |
Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P38902; P40422; | 8×ZN; 1×MG; | ||||
Assess | ||||||
Refined RNA Polymerase II-TFIIS complex |
Heteromer P04050; P07273; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P38902; P40422; | 9×ZN; 1×MG; | ||||
Assess | ||||||
Elongation complex of RNA polymerase II with artificial RdRP scaffold |
Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P38902; P40422; | 8×ZN; 1×MG; | ||||
Assess | ||||||
RNA Polymerase II binary complex with DNA |
Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P38902; P40422; | 8×ZN; 1×MG; | ||||
Assess | ||||||
Complete 12-Subunit RNA Polymerase II at 3.8 Angstrom |
Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P38902; P40422; | 8×ZN; 1×MG; | ||||
Assess | ||||||
12-Subunit RNA Polymerase II Refined with Zn-SAD data |
Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P38902; P40422; | 8×ZN; 1×MG; | ||||
Assess | ||||||
Structure of RNA Polymerase II-TFIIF complex |
Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P38902; P40422; P41895; | 8×ZN; 1×MG; | ||||
Assess | ||||||
RNA Polymerase II initial transcribing complex with a 4nt DNA-RNA hybrid and soaked with AMPCPP |
Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P38902; P40422; | 1×APC; 8×ZN; 1×MG; | ||||
Assess | ||||||
8-oxoguanine containing RNA polymerase II elongation complex E |
Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P38902; P40422; | 1×MG; 8×ZN; | ||||
Assess | ||||||
Crystal structure of a transcribing RNA Polymerase II complex reveals a complete transcription bubb… |
Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P38902; P40422; | |||||
Assess | ||||||
Complete RNA Polymerase II elongation complex |
Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P38902; P40422; | 8×ZN; 1×MG; | ||||
Assess | ||||||
CPD lesion containing RNA Polymerase II elongation complex B |
Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P38902; P40422; | 1×MG; 8×ZN; | ||||
Assess | ||||||
RNA Polymerase II-TFIIS-DNA/RNA complex |
Heteromer P04050; P07273; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P38902; P40422; | |||||
Assess | ||||||
Crystal structure of a transcribing RNA Polymerase II complex reveals a complete transcription bubb… |
Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P38902; P40422; | 9×ZN; 2×MG; | ||||
Assess | ||||||
Yeast RNAP II containing poly(A)-signal sequence in the active site |
Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P38902; P40422; | 8×ZN; 1×MG; | ||||
Assess | ||||||
Elongation complex of RNA polymerase II with a hepatitis delta virus-derived RNA stem loop |
Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P38902; P40422; | 8×ZN; 1×MG; | ||||
Assess | ||||||
12-subunit RNA Polymerase II |
Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P38902; P40422; | 8×ZN; | ||||
Assess | ||||||
Crystal structure of a transcribing RNA Polymerase II complex reveals a complete transcription bubb… |
Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P38902; P40422; | 8×ZN; 2×MG; | ||||
Assess | ||||||
Crystal structure of RNA Polymerase II in complex with TFIIB |
Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P38902; P40422; | 9×ZN; | ||||
Assess | ||||||
RNA polymerase II variant containing A Chimeric RPB9-C11 subunit |
Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P38902; P40422; | 7×ZN; 1×MG; | ||||
Assess | ||||||
Complete RNA Polymerase II elongation complex with substrate analogue GMPCPP |
Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P38902; P40422; | 8×ZN; 1×MG; 1×G2P; | ||||
Assess | ||||||
RNA Polymerase II-Bye1 complex |
Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P36106; P38902; P40422; | 8×ZN; 1×MG; | ||||
Assess | ||||||
Structure of transcribing RNA polymerase II-nucleosome complex |
Heteromer P02281; P04050; P06897; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P38902; P40422; P62799; P84233; | 8×ZN; 1×MG; | ||||
Assess | ||||||
Mediator-RNA Polymerase II Pre-Initiation Complex |
Heteromer P04050; P06839; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32569; P32570; P32585; P32773; P32774; P33308; P34162; P35189; P36100; P36145; P38304; P38633; P38782; P38902; P40422; P41895; P41896; P47822; Q00578; Q02939; Q08278; Q12343; Q3E7C1; Q99278; | 8×ZN; 1×MG; | ||||
Assess | ||||||
Yeast RNA polymerase II transcription pre-initiation complex with the +1 nucleosome and NTP (comple… |
Heteromer P02281; P04050; P06839; P06897; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32773; P32774; P32776; P36100; P36145; P38902; P40422; P41895; P41896; P62799; P84233; Q00578; Q02939; Q03290; Q04673; Q12004; Q3E7C1; | 17×ZN; 1×MG; 1×SF4; | ||||
Assess | ||||||
Yeast RNA polymerase II transcription pre-initiation complex (consensus) |
Heteromer P04050; P06839; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32773; P32774; P32776; P36100; P36145; P38902; P40422; P41895; P41896; Q00578; Q02939; Q03290; Q04673; Q12004; Q3E7C1; | 1×SF4; 17×ZN; 1×BEF; 2×MG; 1×ADP; | ||||
Assess | ||||||
Core Mediator-PICearly (Copy A) |
Heteromer P04050; P07273; P08518; P16370; P19263; P20433; P20434; P20435; P20436; P22139; P25046; P27999; P29055; P32569; P32570; P32585; P33308; P34162; P38304; P38633; P38782; P38902; P40422; P41895; P41896; P47822; Q06213; Q08278; Q12321; Q12343; Q99278; | |||||
Assess | ||||||
Complex structure of trailing EC of EC+EC (trailing EC-focused) |
Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P38902; P40422; P41895; P41896; | 8×ZN; 2×MG; | ||||
Assess | ||||||
Yeast RNA polymerase II transcription pre-initiation complex with open promoter DNA |
Heteromer P04050; P06839; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32773; P32774; P32776; P36100; P36145; P38902; P40422; P41895; P41896; Q00578; Q02939; Q03290; Q04673; Q12004; Q3E7C1; | 1×SF4; 17×ZN; 1×BEF; 2×MG; 1×ADP; | ||||
Assess | ||||||
RNA polymerase II pre-initiation complex (PIC1) |
Heteromer P04050; P06839; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32776; P36100; P36145; P38902; P40422; P41895; P41896; Q00578; Q02939; Q03290; Q04673; Q12004; Q3E7C1; | 17×ZN; 1×MG; 1×SF4; | ||||
Assess | ||||||
Yeast RNA polymerase II transcription pre-initiation complex with the +1 nucleosome and NTP, comple… |
Heteromer P02281; P04050; P06839; P06897; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32773; P32774; P32776; P36100; P36145; P38902; P40422; P41895; P41896; P62799; P84233; Q00578; Q02939; Q03290; Q04673; Q12004; Q3E7C1; | 17×ZN; 1×MG; 1×SF4; | ||||
Assess | ||||||
Mediator-PIC Early (Core B) |
Heteromer P04050; P07273; P08518; P16370; P19263; P20433; P20434; P20435; P20436; P22139; P25046; P27999; P29055; P32569; P32570; P32585; P33308; P34162; P38304; P38633; P38782; P38902; P40422; P41895; P41896; P47822; Q06213; Q08278; Q12321; Q12343; Q99278; | |||||
Assess | ||||||
Composite structure of EC+EC |
Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P38902; P40422; P41895; P41896; | 16×ZN; 4×MG; | ||||
Assess | ||||||
Yeast RNA polymerase II transcription pre-initiation complex with core Mediator |
Heteromer A0A6A5PRZ0; G4XSG8; P04050; P06839; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P36100; P36145; P38902; P40422; P41896; Q00578; | 1×SF4; 17×ZN; 1×MG; | ||||
Assess | ||||||
RNA pol II elongation complex |
Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P38902; P40422; | 8×ZN; 1×MG; | ||||
Assess | ||||||
Ternary complex of RNA Pol II, transcription scaffold and Rad26 |
Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P38902; P40352; P40422; | 8×ZN; 1×MG; | ||||
Assess | ||||||
RNA polymerase II initially transcribing complex (ITC) |
Heteromer P04050; P06839; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32773; P32774; P32776; P36100; P36145; P38902; P40422; P41895; P41896; Q00578; Q02939; Q03290; Q04673; Q12004; Q3E7C1; | 15×ZN; 1×MG; 1×SF4; | ||||
Assess | ||||||
Yeast RNA polymerase II transcription pre-initiation complex with closed distorted promoter DNA |
Heteromer P04050; P06839; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32773; P32774; P32776; P36100; P36145; P38902; P40422; P41895; P41896; Q00578; Q02939; Q03290; Q04673; Q12004; Q3E7C1; | 1×SF4; 17×ZN; 1×BEF; 2×MG; 1×ADP; | ||||
Assess | ||||||
Yeast RNA polymerase II transcription pre-initiation complex with the +1 nucleosome (complex A) |
Heteromer P02281; P04050; P06839; P06897; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32773; P32774; P32776; P36100; P36145; P38902; P40422; P41895; P41896; P62799; P84233; Q00578; Q02939; Q03290; Q04673; Q12004; Q3E7C1; | 17×ZN; 1×MG; 1×SF4; | ||||
Assess | ||||||
Structure of EC+EC (leading EC-focused) |
Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P38902; P40422; | 8×ZN; 2×MG; | ||||
Assess | ||||||
STRUCTURE OF YEAST TRANSCRIPTION PRE-INITIATION COMPLEX WITH TFIIH |
Heteromer P04050; P06839; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32773; P32774; P32776; P36100; P36145; P38902; P40422; P41895; P41896; Q00578; Q02939; Q03290; Q04673; Q12004; Q3E7C1; | 16×ZN; 1×MG; 1×SF4; | ||||
Assess | ||||||
STRUCTURE OF YEAST TRANSCRIPTION PRE-INITIATION COMPLEX WITH TFIIH AND CORE MEDIATOR |
Heteromer P04050; P06839; P08518; P13393; P16370; P19263; P20433; P20434; P20435; P20436; P22139; P25046; P27999; P29055; P32569; P32570; P32585; P32773; P32774; P32776; P33308; P34162; P36100; P36145; P38304; P38633; P38782; P38902; P40422; P41895; P41896; P47822; Q00578; Q02939; Q03290; Q04673; Q06213; Q08278; Q12004; Q12343; Q3E7C1; Q99278; | 16×ZN; 1×MG; 1×SF4; | ||||
Assess | ||||||
RNA polymerase II pre-initiation complex (PIC3) |
Heteromer P04050; P06839; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32773; P32774; P32776; P36100; P36145; P38902; P40422; P41895; P41896; Q00578; Q02939; Q03290; Q04673; Q12004; Q3E7C1; | 17×ZN; 1×MG; 1×SF4; | ||||
Assess | ||||||
RNA Polymerase II-Spt4/5-nucleosome-FACT structure |
Heteromer P02281; P04050; P06897; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27692; P27999; P32558; P32914; P38902; P40422; P62799; P84233; Q04636; | 9×ZN; 1×MG; | ||||
Assess | ||||||
Structure of a yeast closed complex with distorted DNA (core CCdist) |
Heteromer P04050; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32773; P32774; P36100; P36145; P38902; P40422; P41895; P41896; | 10×ZN; 1×MG; | ||||
Assess | ||||||
Structure of a yeast closed complex with distorted DNA (CCdist) |
Heteromer P04050; P06839; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32773; P32774; P32776; P36100; P36145; P38902; P40422; P41895; P41896; Q00578; Q02939; Q03290; Q04673; Q12004; Q3E7C1; | 1×SF4; 16×ZN; 1×MG; | ||||
Assess | ||||||
Yeast RNA polymerase II transcription pre-initiation complex with closed promoter DNA |
Heteromer P04050; P06839; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32773; P32774; P32776; P36100; P36145; P38902; P40422; P41895; P41896; Q00578; Q02939; Q03290; Q04673; Q12004; Q3E7C1; | 1×SF4; 17×ZN; 1×BEF; 2×MG; 1×ADP; | ||||
Assess | ||||||
Orientation of RNA polymerase II within the human VP16-Mediator-pol II-TFIIF assembly |
Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P38902; | 1×MG; 9×ZN; | ||||
Assess | ||||||
Yeast TFIIH in the contracted state within the pre-initiation complex |
Heteromer P04050; P06839; P08518; P20433; P20435; P32776; P36100; P36145; Q00578; Q02939; Q03290; Q04673; Q12004; Q3E7C1; | 1×SF4; 10×ZN; 1×BEF; 1×MG; 1×ADP; | ||||
Assess | ||||||
Structure of a yeast closed complex (core CC1) |
Heteromer P04050; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32773; P32774; P38902; P40422; P41895; P41896; | 9×ZN; 1×MG; | ||||
Assess | ||||||
Cryo-EM map of a yeast minimal preinitiation complex interacting with the Mediator Head module |
Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P38902; P40422; | |||||
Assess | ||||||
RNA polymerase II pre-initiation complex (PIC2) |
Heteromer P04050; P06839; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32773; P32774; P32776; P36100; P36145; P38902; P40422; P41895; P41896; Q00578; Q02939; Q03290; Q04673; Q12004; Q3E7C1; | 19×ZN; 1×SF4; 1×MG; | ||||
Assess | ||||||
RNA polymerase II-Spt4/5-nucleosome-Chd1 structure |
Heteromer P02281; P04050; P06897; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27692; P27999; P32657; P32914; P38902; P40422; P62799; P84233; | 8×ZN; 1×MG; 1×ADP; 1×BEF; | ||||
Assess | ||||||
Yeast RNA polymerase II transcription pre-initiation complex with initial transcription bubble |
Heteromer P04050; P06839; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32773; P32774; P32776; P36100; P36145; P38902; P40422; P41895; P41896; Q00578; Q02939; Q03290; Q04673; Q12004; Q3E7C1; | 1×SF4; 17×ZN; 1×BEF; 2×MG; 1×ADP; | ||||
Assess | ||||||
Yeast TFIIH in the expanded state within the pre-initiation complex |
Heteromer P04050; P06839; P08518; P20433; P20435; P32776; P36100; P36145; Q00578; Q02939; Q03290; Q04673; Q12004; Q3E7C1; | 1×SF4; 11×ZN; 1×BEF; 1×MG; 1×ADP; | ||||
Assess | ||||||
Cryo-EM structure of yeast Rat1-bound Pol II pre-termination transcription complex 1 (Pol II Rat1-P… |
Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27692; P27999; P38902; P40422; P53063; Q02792; | 8×ZN; 3×MG; | ||||
Assess | ||||||
Cryo-EM structure of yeast Rat1-bound Pol II pre-termination transcription complex 2 (Pol II Rat1-P… |
Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27692; P27999; P38902; P40422; P53063; Q02792; | 8×ZN; 3×MG; | ||||
Assess | ||||||
Cryo-EM structure of CPD-stalled Pol II in complex with Rad26 (engaged state) |
Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P38902; P40422; | 8×ZN; 1×MG; | ||||
Assess | ||||||
Yeast RNA polymerase II transcription pre-initiation complex with core Mediator and the +1 nucleoso… |
Heteromer P02281; P04050; P06839; P06897; P08518; P13393; P16370; P19263; P20433; P20434; P20435; P20436; P22139; P25046; P27999; P29055; P32569; P32570; P32585; P32773; P32774; P32776; P33308; P34162; P36100; P36145; P38304; P38633; P38782; P38902; P40422; P41895; P41896; P47822; P62799; P84233; Q00578; Q02939; Q03290; Q04673; Q06213; Q08278; Q12004; Q12321; Q12343; Q3E7C1; Q99278; | 1×SF4; 17×ZN; 1×MG; | ||||
Assess | ||||||
Cryo-EM structure of CPD-stalled Pol II (Conformation 2) |
Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P38902; P40422; | 8×ZN; 1×MG; | ||||
Assess | ||||||
Cryo-EM structure of CPD-stalled Pol II in complex with Rad26 (open state) |
Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P38902; P40422; | 8×ZN; 1×MG; | ||||
Assess | ||||||
Cryo-EM structure of backtracked Pol II |
Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P38902; P40422; | 8×ZN; 1×MG; | ||||
Assess | ||||||
Cryo-EM structure of CPD-stalled Pol II (conformation 1) |
Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P38902; P40422; | 8×ZN; 1×MG; | ||||
Assess | ||||||
Cryo-EM structure of CPD lesion containing RNA Polymerase II elongation complex with Rad26 and Elf1… |
Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P36053; P38902; P40352; P40422; | 8×ZN; 1×MG; | ||||
Assess | ||||||
Cryo-EM structure of backtracked Pol II in complex with Rad26 |
Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P38902; P40422; | 8×ZN; 1×MG; | ||||
Assess | ||||||
Transcription initiation complex structures elucidate DNA opening (OC) |
Heteromer P04050; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32773; P32774; P36100; P36145; P38902; P40422; P41895; P41896; | 10×ZN; 1×MG; | ||||
Assess | ||||||
the P-lobe of RNA polymerase II pre-initiation complex |
Heteromer P04050; P06839; P07273; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32773; P32774; P36100; P36145; P38902; P40422; P41895; P41896; Q00578; Q02939; Q3E7C1; | 2×MG; 9×ZN; | ||||
Assess | ||||||
Architecture of the RNA polymerase II-Mediator core transcription initiation complex |
Heteromer A0A0H2UKZ8; P04050; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P38902; P40422; P41896; | 9×ZN; 1×MG; | ||||
Assess | ||||||
Transcription initiation complex structures elucidate DNA opening (CC) |
Heteromer P04050; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32773; P32774; P36100; P36145; P38902; P40422; P41895; P41896; | 10×ZN; 1×MG; | ||||
Assess | ||||||
Architecture of the RNA polymerase II-Mediator core transcription initiation complex |
Heteromer A0A0H2UKZ8; P04050; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32569; P32570; P32585; P34162; P38304; P38782; P38902; P40422; P41896; Q99278; | 9×ZN; 1×MG; | ||||
Assess | ||||||
RNA polymerase II-TFIIS complex |
Heteromer P04050; P07273; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P38902; P40422; | 1×MG; 9×ZN; | ||||
Assess | ||||||
Complete 12-subunit RNA polymerase II |
Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P38902; P40422; | |||||
Assess |
1 SWISS-MODEL model
Template | Oligo-state | QMEANDisCo | Range | Ligands | Trg-Tpl Seq id (%) | |
---|---|---|---|---|---|---|
4bbs.1.G | monomer | 0.84 | 100.00 | |||
Assess |