P36049 (EBP2_YEAST) Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)

rRNA-processing protein EBP2 UniProtKBInterProSTRINGInteractive Modelling

427 aa; Sequence (Fasta) ; 2 identical sequences: Saccharomyces cerevisiae: N1P0N4, A0A8H4BY00

Available Structures

15 Experimental Structures

DescriptionPDB IDOligo-stateRangeLigands
Nog1-TAP associated immature ribosomal particle population E from S. cerevisiae
7ohr
 Heteromer
P04456; P05737; P05738; P05740; P05743; P05744; P05745; P05748; P05749; P0C2H6; P0C2H8; P0CX23; P0CX41; P0CX49; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P25582; P26784; P33201; P36105; P38061; P38779; P40007; P40010; P40078; P40693; P40991; P49166; P49167; P53261; P53927; P87262; Q02326; Q02892; Q03532; Q04660; Q07896; Q07915; Q08235; Q08962; Q12024; Q12522; Q12690; 		196-340
1×ZN;
Assess
State E1 nucleolar 60S ribosome biogenesis intermediate - Composite model
7r7a
 Heteromer
P04456; P05737; P05738; P05740; P05743; P05744; P05745; P05748; P05749; P0C2H6; P0C2H8; P0CX23; P0CX41; P0CX43; P0CX49; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P25582; P25808; P26784; P33201; P36105; P38061; P38202; P38779; P39744; P40007; P40010; P40078; P40693; P40991; P43586; P49166; P49167; P53261; P53927; P87262; Q02326; Q02753; Q02892; Q03532; Q04660; Q07896; Q07915; Q08235; Q08962; Q12024; Q12522; Q12690; 		196-340
2×ZN;
Assess
State E (TAP-Flag-Ytm1 E80A) - Visualizing the assembly pathway of nucleolar pre-60S ribosomes
6elz
 Heteromer
P02406; P04456; P05737; P05738; P05740; P05743; P05744; P05745; P05748; P05749; P0C2H6; P0C2H8; P0CX23; P0CX41; P0CX49; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P25582; P26784; P33201; P36105; P38061; P38202; P38779; P40007; P40010; P40078; P40693; P40991; P49166; P49167; P53261; P53927; P87262; Q02326; Q02753; Q02892; Q03532; Q04660; Q07896; Q07915; Q08235; Q08962; Q12024; Q12522; Q12690; 		196-340
1×ZN;
Assess
State E2 nucleolar 60S ribosomal biogenesis intermediate - Composite model
7nac
 Heteromer
P04456; P05737; P05738; P05740; P05743; P05744; P05745; P05748; P05749; P0C2H6; P0C2H8; P0CX23; P0CX41; P0CX43; P0CX49; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P25582; P25808; P26784; P33201; P36105; P38061; P38202; P38779; P39744; P40007; P40010; P40078; P40693; P40991; P43586; P49166; P49167; P53261; P53927; P87262; Q02326; Q02753; Q02892; Q03532; Q04031; Q04660; Q07896; Q07915; Q08235; Q08962; Q12024; Q12522; Q12690; 		196-340
2×ZN; 1×SAH;
Assess
State D architectural model (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pr…
6em5
 Heteromer
O14455; P04456; P05737; P05738; P05740; P05743; P05744; P05748; P05749; P0C2H6; P0C2H8; P0CX23; P0CX41; P0CX49; P0CX82; P0CX84; P10664; P10962; P14120; P14126; P17076; P25582; P26784; P33201; P35178; P36105; P38061; P38202; P38779; P38805; P40007; P40010; P40078; P40693; P40991; P49166; P49167; P53136; P53261; P53927; P87262; Q02326; Q02753; Q02892; Q03532; Q04660; Q07896; Q07915; Q08235; Q08962; Q12024; Q12522; Q12690; 		196-327
Assess
Structure of the Brx1 and Ebp2 complex
5z1g
 Heteromer
Q08235; 		195-293
1×SO4;
Assess
State E2 nucleolar 60S ribosomal biogenesis intermediate - L1 stalk local model
7r7c
 Heteromer
P0CX43; P25582; P40078; P40991; P43586; Q02892; Q04660; Q08235; Q08962; 		245-340
Assess
Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL2 expression shut down…
7ohv
 Heteromer
P02406; P04456; P05737; P05738; P05740; P05743; P05744; P05745; P05748; P05749; P0C2H6; P0C2H8; P0CX23; P0CX41; P0CX49; P0CX82; P0CX84; P10664; P14126; P17076; P25582; P26784; P33201; P36105; P38061; P38779; P40007; P40078; P40693; P49166; P49167; P53261; P53927; Q02326; Q02892; Q03532; Q04660; Q07915; Q08235; Q12024; Q12522; Q12690; 		196-279
1×ZN;
Assess
Cryo-EM structure of a nucleolar pre-60S ribosome (Rpf1-TAP)
5z3g
 Heteromer
P05737; P05738; P05740; P05743; P05744; P05745; P05748; P0CX23; P0CX49; P0CX84; P10664; P10962; P14126; P17076; P26784; P35178; P36105; P38061; P38779; P38805; P40693; P49166; P53136; P53261; P53927; Q02326; Q03532; Q08235; Q12522; Q12690; 		195-276
Assess
State E2 nucleolar 60S ribosomal intermediate - Model for Noc2/Noc3 region
7r6k
 Heteromer
P05745; P05748; P17076; P25582; P39744; P40078; P40991; P43586; P87262; Q04031; Q04660; Q07896; Q08235; Q08962; 		214-294
Assess
State B architectural model (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pr…
6em4
 Heteromer
O14455; P05737; P05740; P05743; P05744; P05748; P0CX23; P0CX41; P0CX49; P0CX84; P10664; P10962; P14126; P17076; P26784; P35178; P36105; P38061; P38779; P38805; P40007; P40693; P49166; P53136; P53261; P53927; Q02326; Q03532; Q04660; Q07915; Q08235; Q12522; Q12690; 		196-261
Assess
Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL25 expression shut dow…
7ohw
 Heteromer
P05737; P05738; P05740; P05743; P05744; P05745; P05748; P0CX23; P0CX41; P0CX49; P0CX84; P10664; P10962; P14126; P17076; P26784; P33201; P35178; P36105; P38061; P38779; P38805; P40007; P40078; P40693; P49166; P53136; P53261; P53927; Q02326; Q02892; Q03532; Q04660; Q08235; Q12522; Q12690; 		196-261
1×ZN;
Assess
State A architectural model (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pr…
6em3
 Heteromer
O14455; P05737; P05740; P05743; P05744; P05748; P0CX23; P0CX49; P0CX84; P10664; P10962; P17076; P26784; P35178; P36105; P38061; P38779; P38805; P40007; P40693; P49166; P53136; P53261; P53927; Q02326; Q03532; Q04660; Q08235; Q12690; 		196-261
Assess
State C (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pre-60S ribosomes
6em1
 Heteromer
O14455; P05737; P05738; P05740; P05743; P05744; P05748; P0CX23; P0CX41; P0CX49; P0CX84; P10664; P10962; P14126; P17076; P26784; P33201; P35178; P36105; P38061; P38202; P38779; P38805; P40007; P40010; P40078; P40693; P49166; P53136; P53261; P53927; Q02326; Q02892; Q03532; Q04660; Q07915; Q08235; Q12522; Q12690; 		196-261
2×ZN;
Assess
Yeast co-transcriptional Noc1-Noc2 RNP assembly checkpoint intermediate
8e5t
 Heteromer
P05737; P05744; P05745; P05748; P0CX23; P0CX49; P10664; P10962; P17076; P26784; P35178; P36105; P38061; P38779; P39744; P40693; P53261; P53927; Q02326; Q03532; Q04660; Q08235; Q12176; Q12690; 		196-257
33×MG; 1×ZN;
Assess

1 SWISS-MODEL model

TemplateOligo-stateQMEANDisCoRangeLigandsTrg-Tpl Seq id (%)
5z1g.1.Amonomer0.60195-293
100.00
Assess