P38805 (RPF1_YEAST) Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)

Ribosome production factor 1 UniProtKBInterProSTRINGInteractive Modelling

295 aa; Sequence (Fasta) ; 11 identical sequences

Available Structures

10 Experimental Structures

DescriptionPDB IDOligo-stateRangeLigands
Yeast nucleolar pre-60S ribosomal subunit (state 3)
6cb1
 Heteromer
P04456; P05737; P05740; P05743; P05744; P05745; P05748; P0C2H6; P0CX23; P0CX49; P0CX84; P10664; P10962; P14120; P17076; P26784; P35178; P36105; P38061; P38779; P40007; P40693; P49166; P49167; P53136; P53261; P53927; P87262; Q02326; Q03532; Q04660; Q08235; Q12690; 		8-295
2×ZN;
Assess
Yeast nucleolar pre-60S ribosomal subunit (state 2)
6c0f
 Heteromer
P05737; P05740; P05743; P05744; P05745; P05748; P0CX23; P0CX41; P0CX49; P0CX84; P10664; P10962; P14126; P17076; P26784; P35178; P36080; P36105; P38061; P38779; P38789; P40007; P40693; P49166; P53136; P53261; P53927; Q02326; Q02892; Q03532; Q04660; Q06511; Q07915; Q08235; Q12522; Q12690; 		8-295
3×ZN;
Assess
State D architectural model (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pr…
6em5
 Heteromer
O14455; P04456; P05737; P05738; P05740; P05743; P05744; P05748; P05749; P0C2H6; P0C2H8; P0CX23; P0CX41; P0CX49; P0CX82; P0CX84; P10664; P10962; P14120; P14126; P17076; P25582; P26784; P33201; P35178; P36049; P36105; P38061; P38202; P38779; P40007; P40010; P40078; P40693; P40991; P49166; P49167; P53136; P53261; P53927; P87262; Q02326; Q02753; Q02892; Q03532; Q04660; Q07896; Q07915; Q08235; Q08962; Q12024; Q12522; Q12690; 		11-294
Assess
Nog1-TAP associated immature ribosomal particle population F from S. cerevisiae
7ohs
 Heteromer
P05737; P05738; P05740; P05743; P05744; P05745; P05748; P0CX23; P0CX41; P0CX49; P0CX84; P10664; P10962; P14126; P17076; P26784; P33201; P35178; P36105; P38061; P38779; P40007; P40078; P40693; P49166; P53136; P53261; P53927; Q02326; Q02892; Q03532; Q04660; Q07915; Q08235; Q12522; Q12690; 		11-294
2×ZN;
Assess
State B architectural model (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pr…
6em4
 Heteromer
O14455; P05737; P05740; P05743; P05744; P05748; P0CX23; P0CX41; P0CX49; P0CX84; P10664; P10962; P14126; P17076; P26784; P35178; P36049; P36105; P38061; P38779; P40007; P40693; P49166; P53136; P53261; P53927; Q02326; Q03532; Q04660; Q07915; Q08235; Q12522; Q12690; 		11-294
Assess
Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL25 expression shut dow…
7ohw
 Heteromer
P05737; P05738; P05740; P05743; P05744; P05745; P05748; P0CX23; P0CX41; P0CX49; P0CX84; P10664; P10962; P14126; P17076; P26784; P33201; P35178; P36049; P36105; P38061; P38779; P40007; P40078; P40693; P49166; P53136; P53261; P53927; Q02326; Q02892; Q03532; Q04660; Q08235; Q12522; Q12690; 		11-294
1×ZN;
Assess
Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL34 expression shut dow…
7ohx
 Heteromer
P05737; P05738; P05740; P05743; P05744; P05745; P05748; P0CX23; P0CX49; P0CX84; P10664; P10962; P14126; P17076; P26784; P33201; P35178; P36105; P38061; P38779; P40007; P40693; P49166; P53136; P53261; P53927; Q02326; Q02892; Q03532; Q04660; Q07915; Q12522; Q12690; 		11-294
2×ZN;
Assess
State A architectural model (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pr…
6em3
 Heteromer
O14455; P05737; P05740; P05743; P05744; P05748; P0CX23; P0CX49; P0CX84; P10664; P10962; P17076; P26784; P35178; P36049; P36105; P38061; P38779; P40007; P40693; P49166; P53136; P53261; P53927; Q02326; Q03532; Q04660; Q08235; Q12690; 		11-294
Assess
State C (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pre-60S ribosomes
6em1
 Heteromer
O14455; P05737; P05738; P05740; P05743; P05744; P05748; P0CX23; P0CX41; P0CX49; P0CX84; P10664; P10962; P14126; P17076; P26784; P33201; P35178; P36049; P36105; P38061; P38202; P38779; P40007; P40010; P40078; P40693; P49166; P53136; P53261; P53927; Q02326; Q02892; Q03532; Q04660; Q07915; Q08235; Q12522; Q12690; 		11-294
2×ZN;
Assess
Cryo-EM structure of a nucleolar pre-60S ribosome (Rpf1-TAP)
5z3g
 Heteromer
P05737; P05738; P05740; P05743; P05744; P05745; P05748; P0CX23; P0CX49; P0CX84; P10664; P10962; P14126; P17076; P26784; P35178; P36049; P36105; P38061; P38779; P40693; P49166; P53136; P53261; P53927; Q02326; Q03532; Q08235; Q12522; Q12690; 		88-295
Assess

2 SWISS-MODEL models

TemplateOligo-stateQMEANDisCoRangeLigandsTrg-Tpl Seq id (%)
6c0f.1.Kmonomer0.808-295
100.00
Assess
6zqc.36.Amonomer0.6513-295
26.01
Assess