P43588 (RPN11_YEAST) Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)

Ubiquitin carboxyl-terminal hydrolase RPN11 UniProtKBInterProSTRINGInteractive Modelling

306 aa; Sequence (Fasta) ; 9 identical sequences: Saccharomyces cerevisiae: N1P4N6, G2WDE3, C8Z7T7, C7GYB0, B5VI30, A0A6A5PWR8, A7A242, B3LUL2; Saccharomyces pastorianus: A0A6C1DT11

Available Structures

37 Experimental Structures

DescriptionPDB IDOligo-stateRangeLigands
26S proteasome, s4 state
6fvw
 Heteromer
O13563; O94742; P21242; P21243; P22141; P23638; P23639; P23724; P25043; P25451; P30656; P30657; P32379; P32496; P32565; P33297; P33298; P33299; P38624; P38764; P38886; P40016; P40302; P40303; P40327; P53549; Q01939; Q04062; Q06103; Q08723; Q12250; Q12377; 		18-306
4×ATP; 6×MG; 2×ADP;
Assess
26S proteasome Rpt1-RK -Ubp6-UbVS complex in the si state
7qo5
 Heteromer
O13563; O94742; P0CG47; P21242; P21243; P22141; P23638; P23639; P23724; P25043; P25451; P30656; P30657; P32379; P32496; P32565; P33297; P33298; P33299; P38624; P38764; P38886; P40016; P40302; P40303; P40327; P43593; P53549; Q01939; Q04062; Q06103; Q08723; Q12250; Q12377; 		18-306
5×ATP; 6×MG; 1×ADP;
Assess
26S proteasome Rpt1-RK -Ubp6-UbVS complex in the s2 state
7qo6
 Heteromer
A0A6A5PTH4; A0A6A5PTW0; A0A6A5PUA1; A0A6A5PV22; A0A6A5PWR8; A0A6A5PWS2; A0A6A5PXC6; A0A6A5PXN2; A0A6A5PXS0; A0A6A5PYC9; A0A6A5PYF7; A0A6A5PYX7; A0A6A5Q0P3; A0A6A5Q0W2; A0A6A5Q273; A0A6A5Q2N6; A0A6A5Q382; A0A6A5Q449; A0A6A5Q4M4; A0A6A5Q5W3; A0A6A5Q672; A0A6A5Q8D3; A0A6L0YA22; A0A6L0YP93; A0A6L1AUZ6; A0A6L1BIF8; A0A7I9BXZ7; J3QS39; O94742; P30657; P32565; P38624; P38764; Q04062; Q08723; 		18-306
5×ATP; 6×MG; 1×ADP;
Assess
26S proteasome in presence of ATP (s2)
5mpe
 Heteromer
O13563; O94742; P32496; P32565; P38764; P38886; P40016; Q04062; Q06103; Q08723; Q12250; Q12377; 		18-306
Assess
26S proteasome, s2 state
6fvu
 Heteromer
O13563; O94742; P21242; P21243; P22141; P23638; P23639; P23724; P25043; P25451; P30656; P30657; P32379; P32496; P32565; P33297; P33298; P33299; P38624; P38764; P38886; P40016; P40302; P40303; P40327; P53549; Q01939; Q04062; Q06103; Q08723; Q12250; Q12377; 		18-306
5×ATP; 6×MG; 1×ADP;
Assess
26S proteasome, s3 state
6fvv
 Heteromer
O13563; O94742; P21242; P21243; P22141; P23638; P23639; P23724; P25043; P25451; P30656; P30657; P32379; P32496; P32565; P33297; P33298; P33299; P38624; P38764; P38886; P40016; P40302; P40303; P40327; P53549; Q01939; Q04062; Q06103; Q08723; Q12250; Q12377; 		18-306
2×ADP; 6×MG; 4×ATP;
Assess
26S proteasome, s1 state
6fvt
 Heteromer
O13563; O94742; P21242; P21243; P22141; P23638; P23639; P23724; P25043; P25451; P30656; P30657; P32379; P32496; P32565; P33297; P33298; P33299; P38624; P38764; P38886; P40016; P40302; P40303; P40327; P53549; Q01939; Q04062; Q06103; Q08723; Q12250; Q12377; 		18-306
5×ATP; 6×MG; 1×ADP;
Assess
26S proteasome, s5 state
6fvx
 Heteromer
O13563; O94742; P21242; P21243; P22141; P23638; P23639; P23724; P25043; P25451; P30656; P30657; P32379; P32496; P32565; P33297; P33298; P33299; P38624; P38764; P38886; P40016; P40302; P40303; P40327; P53549; Q01939; Q04062; Q06103; Q08723; Q12250; Q12377; 		18-306
5×ATP; 6×MG; 1×ADP;
Assess
26S proteasome in presence of BeFx (s4)
5mpc
 Heteromer
O13563; O94742; P21242; P21243; P22141; P23638; P23639; P23724; P25043; P25451; P30656; P30657; P32379; P32496; P32565; P33297; P33298; P33299; P38624; P38764; P38886; P40016; P40302; P40303; P40327; P43593; P53549; Q01939; Q04062; Q06103; Q08723; Q12250; Q12377; 		18-306
4×ATP; 6×MG; 2×ADP;
Assess
26S proteasome in presence of AMP-PNP (s3)
5mpb
 Heteromer
O13563; O94742; P21242; P21243; P22141; P23638; P23639; P23724; P25043; P25451; P30656; P30657; P32379; P32496; P32565; P33297; P33298; P33299; P38624; P38764; P38886; P40016; P40302; P40303; P40327; P53549; Q01939; Q04062; Q06103; Q08723; Q12250; Q12377; 		18-306
5×ANP; 6×MG; 1×ADP;
Assess
Structure of the 26S proteasome-Ubp6 complex in the si state (Core Particle and Lid)
7qo3
 Heteromer
O13563; O94742; P21242; P21243; P22141; P23638; P23639; P23724; P25043; P25451; P30656; P30657; P32379; P32496; P32565; P38624; P38764; P38886; P40016; P40302; P40303; Q04062; Q06103; Q08723; Q12250; Q12377; 		18-306
Assess
26S proteasome, s6 state
6fvy
 Heteromer
O13563; O94742; P21242; P21243; P22141; P23638; P23639; P23724; P25043; P25451; P30656; P30657; P32379; P32496; P32565; P33297; P33298; P33299; P38624; P38764; P38886; P40016; P40302; P40303; P40327; P53549; Q01939; Q04062; Q06103; Q08723; Q12250; Q12377; 		18-306
4×ATP; 6×MG; 2×ADP;
Assess
26S proteasome in presence of ATP (s1)
5mpd
 Heteromer
O13563; O94742; P32496; P32565; P38764; P38886; P40016; Q04062; Q06103; Q08723; Q12250; Q12377; 		18-306
Assess
Yeast 26S proteasome bound to ubiquitinated substrate (4D motor state)
6ef3
 Heteromer
P07818; P0CH08; P21242; P21243; P22141; P23638; P23639; P23724; P25043; P25451; P30656; P30657; P32379; P33297; P33298; P33299; P38624; P40302; P40303; P40327; P53549; Q01939; 		22-305
4×ATP; 2×ADP;
Assess
Yeast proteasome in translocation competent state (C3-a)
6j2c
 Heteromer
O13563; O94742; P21242; P21243; P22141; P23638; P23639; P23724; P25043; P25451; P30656; P30657; P32379; P32496; P32565; P33297; P33298; P33299; P38624; P38764; P38886; P40016; P40302; P40303; P40327; P53549; Q01939; Q04062; Q06103; Q08723; Q12250; Q12377; 		23-306
Assess
yeast proteasome in Ub-engaged state (C2)
6j30
 Heteromer
O13563; O94742; P21242; P21243; P22141; P23638; P23639; P23724; P25043; P25451; P30656; P30657; P32379; P32496; P32565; P33297; P33298; P33299; P38624; P38764; P38886; P40016; P40302; P40303; P40327; P53549; Q01939; Q04062; Q06103; Q08723; Q12250; Q12377; 		23-306
Assess
The resting state of yeast proteasome
5wvi
 Heteromer
O13563; O94742; P21242; P21243; P22141; P23638; P23639; P23724; P25043; P25451; P30656; P30657; P32379; P32496; P32565; P33297; P33298; P33299; P38624; P38764; P38886; P40016; P40302; P40303; P40327; P53549; Q01939; Q04062; Q06103; Q08723; Q12250; Q12377; 		23-306
Assess
Yeast proteasome-ADP-AlFx
5wvk
 Heteromer
O13563; O94742; P21242; P21243; P22141; P23638; P23639; P23724; P25043; P25451; P30656; P30657; P32379; P32496; P32565; P33297; P33298; P33299; P38624; P38764; P38886; P40016; P40302; P40303; P40327; P53549; Q01939; Q04062; Q06103; Q08723; Q12250; Q12377; 		23-306
Assess
yeast proteasome in substrate-processing state (C3-b)
6j2n
 Heteromer
O13563; O94742; P21242; P21243; P22141; P23638; P23639; P23724; P25043; P25451; P30656; P30657; P32379; P32496; P32565; P33297; P33298; P33299; P38624; P38764; P38886; P40016; P40302; P40303; P40327; P53549; Q01939; Q04062; Q06103; Q08723; Q12250; Q12377; 		23-306
Assess
Structure of the yeast 26S proteasome lid sub-complex
3jck
 Heteromer
O94742; P32496; P40016; Q04062; Q06103; Q08723; Q12250; Q12377; 		24-306
1×ZN;
Assess
Structure of yeast 26S proteasome in M2 state derived from Titan dataset
3jcp
 Heteromer
O13563; O94742; P21242; P21243; P22141; P23638; P23639; P23724; P25043; P25451; P30656; P30657; P32379; P32496; P32565; P33297; P33298; P33299; P38624; P38764; P38886; P40016; P40302; P40303; P40327; P53549; Q01939; Q04062; Q06103; Q08723; Q12250; Q12377; 		23-298
Assess
Yeast proteasome in resting state (C1-a)
6j2x
 Heteromer
O13563; O94742; P21242; P21243; P22141; P23638; P23639; P23724; P25043; P25451; P30656; P30657; P32379; P32496; P32565; P33297; P33298; P33299; P38624; P38764; P38886; P40016; P40302; P40303; P40327; P53549; Q01939; Q04062; Q06103; Q08723; Q12250; Q12377; 		23-298
Assess
Yeast proteasome in Ub-accepted state (C1-b)
6j2q
 Heteromer
O13563; O94742; P21242; P21243; P22141; P23638; P23639; P23724; P25043; P25451; P30656; P30657; P32379; P32496; P32565; P33297; P33298; P33299; P38624; P38764; P38886; P40016; P40302; P40303; P40327; P53549; Q01939; Q04062; Q06103; Q08723; Q12250; Q12377; 		23-298
Assess
Structure of yeast 26S proteasome in M1 state derived from Titan dataset
3jco
 Heteromer
O13563; O94742; P21242; P21243; P22141; P23638; P23639; P23724; P25043; P25451; P30656; P30657; P32379; P32496; P32565; P33297; P33298; P33299; P38624; P38764; P38886; P40016; P40302; P40303; P40327; P53549; Q01939; Q04062; Q06103; Q08723; Q12250; Q12377; 		23-298
Assess
Deep classification of a large cryo-EM dataset defines the conformational landscape of the 26S prot…
4cr2
 Heteromer
O13563; O94742; P21242; P21243; P22141; P23638; P23639; P23724; P25043; P25451; P30656; P30657; P32379; P32496; P32565; P33297; P33298; P33299; P38624; P38764; P38886; P40016; P40302; P40303; P40327; P53549; Q01939; Q04062; Q06103; Q08723; Q12250; Q12377; 		23-298
Assess
Deep classification of a large cryo-EM dataset defines the conformational landscape of the 26S prot…
4cr4
 Heteromer
O13563; O94742; P21242; P21243; P22141; P23638; P23639; P23724; P25043; P25451; P30656; P30657; P32379; P32496; P32565; P33297; P33298; P33299; P38624; P38764; P38886; P40016; P40302; P40303; P40327; P53549; Q01939; Q04062; Q06103; Q08723; Q12250; Q12377; 		23-298
Assess
Deep classification of a large cryo-EM dataset defines the conformational landscape of the 26S prot…
4cr3
 Heteromer
O13563; O94742; P21242; P21243; P22141; P23638; P23639; P23724; P25043; P25451; P30656; P30657; P32379; P32496; P32565; P33297; P33298; P33299; P38624; P38764; P38886; P40016; P40302; P40303; P40327; P53549; Q01939; Q04062; Q06103; Q08723; Q12250; Q12377; 		23-298
Assess
Structure of the 26S proteasome-Ubp6 complex
5a5b
 Heteromer
O13563; O94742; P21242; P21243; P22141; P23638; P23639; P23724; P25043; P25451; P30656; P30657; P32379; P32496; P32565; P33297; P33298; P33299; P38624; P38764; P38886; P40016; P40302; P40303; P40327; P43593; P53549; P62987; Q01939; Q04062; Q06103; Q08723; Q12250; Q12377; 		23-298
Assess
Rpn8/Rpn11 dimer complex
5w83
 Heteromer
Q08723; 		24-222
1×ZN;
Assess
Crystal structure of rpn11 in a heterodimer complex with rpn8, representing the active portion of t…
4owp
 Heteromer
Q08723; 		24-221
1×ZN;
Assess
Zinc-free Rpn11 in complex with Rpn8
4o8y
 Heteromer
Q08723; 		24-220
21×EDO;
Assess
Zinc-bound Rpn11 in complex with Rpn8
4o8x
 Heteromer
Q08723; 		24-220
31×EDO; 1×ZN;
Assess
Crystal Structure of the Rpn8-Rpn11 MPN domain heterodimer, crystal form Ib
4ocm
 Heteromer
Q08723; 		23-217
1×ZN;
Assess
Crystal Structure of the Rpn8-Rpn11 MPN domain heterodimer, crystal form II
4ocn
 Heteromer
Q08723; 		23-217
Assess
Crystal Structure of the Rpn8-Rpn11 MPN domain heterodimer, crystal form Ia
4ocl
 Heteromer
Q08723; 		23-217
1×ZN;
Assess
Protein-protein complex between 26S proteasome regulatory subunit RPN8, RPN11, and Ubiquitin S31
5u4p
 Heteromer
P05759; Q08723; 		24-217
1×ZN;
Assess
Formation of an intricate helical bundle dictates the assembly of the 26S proteasome lid
3j47
 Heteromer
P32496; P40016; Q04062; Q06103; Q08723; Q12250; Q12377; 		230-298
Assess

2 SWISS-MODEL models

TemplateOligo-stateQMEANDisCoRangeLigandsTrg-Tpl Seq id (%)
5mpe.1.Bmonomer0.6618-306
100.00
Assess
4cr2.1.2monomer0.6323-298
100.00
Assess