P53742 (NOG2_YEAST) Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)

Nucleolar GTP-binding protein 2 UniProtKBInterProSTRINGInteractive Modelling

486 aa; Sequence (Fasta)

Available Structures

20 Experimental Structures

DescriptionPDB IDOligo-stateRangeLigands
Cryo-EM structure of pre-60S ribosome from Saccharomyces cerevisiae rpl4delta63-87 strain at 3.22 A…
7btb
 Heteromer
P02406; P04456; P05737; P05738; P05740; P05743; P05744; P05745; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CX23; P0CX25; P0CX41; P0CX45; P0CX49; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P25382; P26321; P26784; P33201; P36105; P36160; P38061; P38202; P38779; P40078; P40693; P49166; P49167; P53261; P53927; P87262; Q02326; Q02753; Q02892; Q07915; Q08746; Q12080; Q12522; Q12690; 		2-472
2×GTP; 2×MG; 3×ZN;
Assess
Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1 D52A strain
7uqz
 Heteromer
P02406; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CX23; P0CX25; P0CX41; P0CX45; P0CX49; P0CX53; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P25382; P26321; P26784; P33201; P36105; P36160; P38061; P38202; P38779; P40010; P40078; P40693; P47019; P49166; P49167; P53188; P53261; P53927; P87262; Q02326; Q02753; Q02892; Q03862; Q07915; Q08004; Q08746; Q12080; Q12522; Q12690; 		2-472
81×MG; 3×B3P; 5×ZN; 2×GDP; 1×K;
Assess
Nog1-TAP associated immature ribosomal particle population C from S. cerevisiae
7ohq
 Heteromer
P02406; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CX23; P0CX25; P0CX41; P0CX45; P0CX49; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P25382; P26321; P26784; P33201; P36105; P36160; P38061; P38202; P38779; P40010; P40078; P40693; P49166; P49167; P53188; P53261; P53927; P87262; Q02326; Q02753; Q02892; Q07915; Q08746; Q12080; Q12522; Q12690; 		2-472
2×MG; 3×ZN;
Assess
Nog1-TAP associated immature ribosomal particle population B from S. cerevisiae
7oh3
 Heteromer
P02406; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CX23; P0CX25; P0CX41; P0CX45; P0CX49; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P25382; P26321; P26784; P33201; P36105; P36160; P38061; P38202; P40010; P40078; P49166; P49167; P53188; P87262; Q02326; Q02753; Q02892; Q07915; Q08746; Q12522; Q12690; 		2-472
2×MG; 3×ZN;
Assess
Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state
7uoo
 Heteromer
P02406; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CX23; P0CX25; P0CX41; P0CX45; P0CX49; P0CX53; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P25382; P26321; P26784; P33201; P36105; P36160; P38061; P38202; P38779; P40010; P40078; P40693; P47019; P49166; P49167; P53188; P53261; P53927; P87262; Q02326; Q02753; Q02892; Q03862; Q07915; Q08004; Q08746; Q12080; Q12522; Q12690; 		2-472
81×MG; 3×B3P; 5×ZN; 1×GDP; 1×GTP; 1×K;
Assess
Structure of the Nop53 pre-60S particle bound to the exosome nuclear cofactors
6ft6
 Heteromer
P02406; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CX23; P0CX25; P0CX41; P0CX45; P0CX49; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P25382; P26321; P26784; P33201; P36105; P36160; P38061; P38202; P38801; P40010; P40078; P47047; P49166; P49167; P53188; P53261; P87262; Q02326; Q02753; Q02892; Q03862; Q07915; Q08004; Q08746; Q12149; Q12522; Q12690; 		2-472
4×ZN; 2×GTP; 2×MG;
Assess
Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a Spb1 D52A suppr…
7v08
 Heteromer
P02406; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CX23; P0CX25; P0CX41; P0CX45; P0CX49; P0CX53; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P25382; P26321; P26784; P33201; P36105; P36160; P38061; P38202; P38779; P40010; P40078; P40693; P47019; P49166; P49167; P53188; P53261; P53927; P87262; Q02326; Q02753; Q02892; Q03862; Q07915; Q08004; Q08746; Q12080; Q12522; Q12690; 		2-472
81×MG; 3×B3P; 5×ZN; 2×GDP; 1×K;
Assess
Cryo-EM structure of pre-60S ribosomal subunit, unmethylated G2922
7ug6
 Heteromer
P02406; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CX23; P0CX25; P0CX41; P0CX45; P0CX49; P0CX53; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P25382; P26321; P26784; P33201; P36105; P36160; P38061; P38202; P40010; P40078; P47019; P49166; P49167; P87262; Q02326; Q02753; Q02892; Q07915; Q08004; Q08746; Q12522; Q12690; 		2-472
1×GDP; 1×MG;
Assess
Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1-D52A strai…
7uqb
 Heteromer
P02406; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CX23; P0CX25; P0CX41; P0CX45; P0CX49; P0CX53; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P25382; P26321; P26784; P33201; P36105; P36160; P38061; P38202; P38779; P40010; P40078; P40693; P47019; P49166; P49167; P53188; P53261; P53927; P87262; Q02326; Q02753; Q02892; Q03862; Q07915; Q08004; Q08746; Q12080; Q12522; Q12690; 		2-472
3×B3P; 81×MG; 5×ZN; 2×GDP; 1×ALF; 1×K;
Assess
Cryo-em structure of eukaryotic pre-60S ribosomal subunits
3jct
 Heteromer
P02406; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CX23; P0CX25; P0CX41; P0CX45; P0CX49; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P25382; P26321; P26784; P33201; P36105; P36160; P38061; P38202; P38779; P40010; P40078; P40693; P49166; P49167; P53188; P53261; P53927; P87262; Q02326; Q02753; Q02892; Q03862; Q07915; Q08004; Q08746; Q12080; Q12522; Q12690; 		2-472
4×ZN; 2×GTP; 2×MG;
Assess
Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL2 expression shut down…
7oht
 Heteromer
P05737; P05738; P05744; P0C0W9; P0CX23; P0CX41; P0CX49; P10664; P14126; P25382; P26321; P26784; P33201; P36105; P36160; P38061; P40078; Q02326; Q02753; Q02892; Q07915; Q08746; Q12522; 		2-469
2×MG; 1×ZN;
Assess
Nog1-TAP associated immature ribosomal particle population A from S. cerevisiae
7of1
 Heteromer
P02406; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05748; P05749; P0C2H6; P0C2H8; P0CX23; P0CX25; P0CX41; P0CX45; P0CX49; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P26784; P33201; P36105; P38061; P40078; P49166; P49167; P87262; Q02326; Q02753; Q02892; Q07915; Q12522; Q12690; 		2-468
2×MG;
Assess
Rix1-Rea1 pre-60S particle - full composite structure
6ylh
 Heteromer
P02406; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CX23; P0CX25; P0CX41; P0CX43; P0CX45; P0CX49; P0CX53; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P25382; P26321; P26784; P33201; P36105; P38061; P38202; P38803; P38883; P40010; P40078; P47019; P49166; P49167; P53188; P53313; P53877; P87262; Q02326; Q02753; Q02892; Q03862; Q07915; Q08004; Q12019; Q12522; Q12690; 		3-469
4×ZN; 2×GTP; 2×MG;
Assess
Cryo-EM structure of late nuclear (LN) pre-60S ribosomal subunit
6n8j
 Heteromer
P02406; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05747; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CX23; P0CX25; P0CX27; P0CX41; P0CX45; P0CX49; P0CX53; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P26321; P26784; P33201; P36105; P38061; P38202; P40078; P49166; P49167; P87262; Q02326; Q02753; Q02892; Q07915; Q08004; Q12522; Q12690; 		2-468
2×GTP; 2×MG;
Assess
Rix1-Rea1 pre-60S particle - 60S core, body 1 (rigid body refinement)
6ylg
 Heteromer
P02406; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CX23; P0CX25; P0CX41; P0CX43; P0CX45; P0CX49; P0CX53; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P25382; P26321; P26784; P33201; P36105; P38061; P38202; P38803; P40010; P40078; P47019; P49166; P49167; P53188; P53313; P87262; Q02326; Q02753; Q02892; Q03862; Q07915; Q08004; Q12522; Q12690; 		3-469
4×ZN; 2×GTP; 2×MG;
Assess
Cryo-Em structure of eukaryotic pre-60S ribosome subunit from Saccharomyces cerevisiae rpf2 delta 2…
6m62
 Heteromer
P02406; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CX23; P0CX25; P0CX41; P0CX45; P0CX49; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P25382; P26321; P26784; P33201; P36105; P36160; P38061; P38202; P38779; P40010; P40078; P40693; P49166; P49167; P53188; P53261; P53927; P87262; Q02326; Q02753; Q02892; Q03862; Q07915; Q08004; Q08746; Q12080; Q12522; Q12690; 		18-472
4×ZN; 2×GTP; 2×MG;
Assess
Cryo-EM structure of pre-60S ribosome from Saccharomyces cerevisiae rpl4delta63-87 strain at 3.12 A…
7bt6
 Heteromer
P02406; P04456; P05737; P05738; P05740; P05743; P05744; P05745; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CX23; P0CX25; P0CX41; P0CX45; P0CX49; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P25382; P26321; P26784; P33201; P36105; P36160; P38061; P38202; P40078; P49166; P49167; P87262; Q02326; Q02753; Q02892; Q07915; Q08746; Q12522; Q12690; 		19-472
2×GTP; 2×MG; 3×ZN;
Assess
NPC-trapped pre-60S particle
8hfr
 Heteromer
P02406; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05747; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CX23; P0CX25; P0CX27; P0CX41; P0CX43; P0CX45; P0CX49; P0CX53; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P26321; P26784; P33201; P34232; P36105; P38061; P38202; P38861; P39715; P40078; P47019; P49166; P49167; P87262; Q02326; Q02753; Q02892; Q03862; Q07915; Q08004; Q08687; Q12522; Q12690; Q99257; 		157-465
237×MG;
Assess
State NE1 nucleolar 60S ribosome biogenesis intermediate - Overall model
7u0h
 Heteromer
P02406; P04456; P05737; P05738; P05740; P05743; P05744; P05745; P05748; P05749; P0C2H6; P0C2H8; P0CX23; P0CX25; P0CX41; P0CX45; P0CX49; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P25582; P26784; P33201; P36105; P38061; P38202; P38779; P40010; P40078; P40693; P49166; P49167; P53261; P53927; P87262; Q02326; Q02753; Q02892; Q07915; Q12080; Q12522; Q12690; 		156-164
1×MG; 4×ZN;
Assess
Nucleoplasmic pre-60S intermediate of the Nog2 containing post-rotation state from a SPB1 D52A stra…
7uui
monomer2-470
1×MG; 1×K; 1×GDP;
Assess

1 SWISS-MODEL model

TemplateOligo-stateQMEANDisCoRangeLigandsTrg-Tpl Seq id (%)
7uoo.1.jmonomer0.842-472
1×MG; 1×K;100.00
Assess