P9WGZ0 (RPOA_MYCTO) Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)

DNA-directed RNA polymerase subunit alpha UniProtKBInterProInteractive Modelling

347 aa; Sequence (Fasta) 13 identical sequences

Sequence Features

Add
 24-218DNA-directed RNA polymerase, RpoA/D/Rpb3-type
IPR011263PF01193
 57-149DNA-directed RNA polymerase, insert domain
IPR011262PF01000
 242-302RNA polymerase, alpha subunit, C-terminal
IPR011260PF03118

Sequence Alignments

Experimental structures

DescriptionOligo-stateLigandsStructureRange
Mycobacterium tuberculosis RNAP Holo/RbpA in relaxed state Heteromer
P9WGI1; P9WGY5; P9WGY7; P9WGY9; P9WGZ1; P9WHJ5;
ZN;MG;6c051-237
Assess
Mtb RNAP Holo/RbpA/double fork DNA -closed clamp Heteromer
P9WGI1; P9WGY5; P9WGY7; P9WGY9; P9WGZ1; P9WHJ5;
ZN;MG;6c041-237
Assess
Mycobacterium tuberculosis RNAP promoter unwinding intermediate complex with RbpA/CarD and AP3 prom… Heteromer
P9WGI1; P9WGY5; P9WGY7; P9WGY9; P9WGZ1; P9WHJ5; P9WJG3;
C0L;ZN;MG;6eec1-237
Assess
Mtb RNAP Holo/RbpA/Fidaxomicin/upstream fork DNA Heteromer
P9WGI1; P9WGY5; P9WGY7; P9WGY9; P9WGZ1; P9WHJ5;
FI8;ZN;MG;6bzo1-237
Assess
Mycobacterium tuberculosis RNAP promoter unwinding intermediate complex with RbpA/CarD and AP3 prom… Heteromer
P9WGI1; P9WGY5; P9WGY7; P9WGY9; P9WGZ1; P9WHJ5; P9WJG3;
ZN;MG;6ee81-237
Assess
Mycobacterium tuberculosis RNAP open promoter complex with RbpA/CarD and AP3 promoter Heteromer
P9WGI1; P9WGY5; P9WGY7; P9WGY9; P9WGZ1; P9WHJ5; P9WJG3;
ZN;MG;6edt1-237
Assess
Mycobacterium tuberculosis RNAP Holo/RbpA/Fidaxomicin Heteromer
P9WGI1; P9WGY5; P9WGY7; P9WGY9; P9WGZ1; P9WHJ5;
ZN;MG;FI8;6c061-237
Assess
Mycobacterium tuberculosis RNAP with RbpA/us fork and Corallopyronin Heteromer
A5U8D3; P9WGI1; P9WGY5; P9WGY7; P9WGY9; P9WHJ5;
ZN;MG;C0L;6m7j1-237
Assess
Mycobacterium tuberculosis RNAP S456L mutant open promoter complex Heteromer
P9WGI1; P9WGY5; P9WGY7; P9WGY9; P9WGZ1; P9WHJ5; P9WJG3;
ZN;MG;6vw01-237
Assess
Mycobacterium tuberculosis WT RNAP transcription open promoter complex with Sorangicin Heteromer
P9WGI1; P9WGY5; P9WGY7; P9WGY9; P9WGZ1; P9WHJ5; P9WJG3;
SRN;ZN;MG;6vvy1-237
Assess
Mycobacterium tuberculosis RNAP S456L mutant transcription initiation intermediate structure with S… Heteromer
P9WGI1; P9WGY5; P9WGY7; P9WGY9; P9WGZ1; P9WHJ5; P9WJG3;
SRN;ZN;MG;6vvz1-237
Assess
Mycobacterium tuberculosis WT RNAP transcription initiation intermediate structure with Sorangicin Heteromer
P9WGI1; P9WGY5; P9WGY7; P9WGY9; P9WGZ1; P9WHJ5; P9WJG3;
SRN;ZN;MG;6vvx1-237
Assess
Mycobacterium tuberculosis WT RNAP transcription open promoter complex with WhiB7 transcription fac… Heteromer
A0A045J9E2; A0A0H3LGM9; A0A0T9N9K3; A5U052; A5U8D3; P9WHJ4; P9WJG2; Q6MX01;
ZN;MG;SF4;7kif1-237
Assess
Mycobacterium tuberculosis WT RNAP transcription open promoter complex with WhiB7 promoter Heteromer
A0A045J9E2; A0A0H3LGM9; A0A0T9N9K3; A5U052; A5U8D3; P9WHJ4; P9WJG2;
ZN;MG;7kin1-237
Assess
Mycobacterium tuberculosis WT RNAP transcription closed promoter complex with WhiB7 transcription f… Heteromer
A0A045J9E2; A0A0H3LGM9; A0A0T9N9K3; A5U052; A5U8D3; P9WHJ4; P9WJG2; Q6MX01;
ZN;MG;SF4;7kim1-237
Assess
Mycobacterium tuberculosis initial transcription complex comprising sigma H and 5'-OH RNA of 7 nt Heteromer
P9WGH9; P9WGY5; P9WGY7; P9WGY9; P9WGZ1;
ZN;MG;6koo1-236
Assess
Mycobacterium tuberculosis transcription initiation complex with ECF sigma factor sigma H and 6nt R… Heteromer
P9WGH9; P9WGY5; P9WGY7; P9WGY9; P9WGZ1;
ZN;MG;6jcx1-236
Assess
Mycobacterium tuberculosis initial transcription complex comprising sigma H and 5'-OH RNA of 5 nt Heteromer
P9WGH9; P9WGY5; P9WGY7; P9WGY9; P9WGZ1;
ZN;MG;6kon1-236
Assess
Mycobacterium tuberculosis RNA polymerase holoenzyme with ECF sigma factor sigma H Heteromer
P9WGH9; P9WGY5; P9WGY7; P9WGY9; P9WGZ1;
ZN;5zx31-235
Assess
Mycobacterium tuberculosis RNA polymerase transcription initiation open complex with a chimeric ECF… Heteromer
P9WGG7; P9WGH9; P9WGY5; P9WGY7; P9WGY9; P9WGZ1;
ZN;MG;6jcy1-235
Assess
Mycobacterium tuberculosis initial transcription complex comprising sigma H and 5'-OH RNA of 10 nt Heteromer
P9WGH9; P9WGY5; P9WGY7; P9WGY9; P9WGZ1;
ZN;MG;6koq2-236
Assess
Mycobacterium tuberculosis RNA polymerase transcription initiation complex with ECF sigma factor si… Heteromer
P9WGH9; P9WGY5; P9WGY7; P9WGY9; P9WGZ1;
ZN;5zx21-234
Assess
Mycobacterium tuberculosis initial transcription complex comprising sigma H and 5'-OH RNA of 9 nt Heteromer
P9WGH9; P9WGY5; P9WGY7; P9WGY9; P9WGZ1;
ZN;MG;6kop1-234
Assess
Crystal structure of Mycobacterium tuberculosis transcription initiation complex(ECF sigma factor L… Heteromer
P9WGH5; P9WGY5; P9WGY7; P9WGY9; P9WGZ1;
MG;ZN;6dv91-233
Assess
Crystal structure of Mycobacterium tuberculosis transcription initiation complex(ECF sigma factor L… Heteromer
P9WGH5; P9WGY5; P9WGY7; P9WGY9; P9WGZ1;
ZN;6dvc1-232
Assess
Crystal structure of MTB sigma L transcription initiation complex with 9 nt long RNA primer Heteromer
P9WGH5; P9WGY5; P9WGY7; P9WGY9; P9WGZ1;
6tyg1-232
Assess
Crystal structure of MTB sigma L transcription initiation complex with 5 nt long RNA primer Heteromer
P9WGH5; P9WGY5; P9WGY7; P9WGY9; P9WGZ1;
6tye1-232
Assess
Crystal structure of Mycobacterium tuberculosis transcription initiation complex(ECF sigma factor L… Heteromer
P9WGH5; P9WGY5; P9WGY7; P9WGY9; P9WGZ1;
ZN;6dvb1-232
Assess
Crystal structure of MTB sigma L transcription initiation complex with 6 nt long RNA primer Heteromer
P9WGH5; P9WGY5; P9WGY7; P9WGY9; P9WGZ1;
6tyf1-232
Assess
Crystal structure of Mycobacterium tuberculosis transcription initiation complex(ECF selenomethioni… Heteromer
P9WGH5; P9WGY5; P9WGY7; P9WGY9; P9WGZ1;
ZN;6dve1-232
Assess
Crystal structure of Mycobacterium tuberculosis transcription initiation complex(ECF sigma factor L… Heteromer
P9WGH5; P9WGY5; P9WGY7; P9WGY9; P9WGZ1;
ZN;6dvd1-232
Assess
Crystal structure of Mycobacterium tuberculosis transcription initiation complex containing 3 nt of… Heteromer
P9WGI1; P9WGY5; P9WGY7; P9WGY9; P9WGZ1;
ZN;MG;5uh53-232
Assess
Crystal structure of Mycobacterium tuberculosis transcription initiation complex containing 3nt RNA… Heteromer
P9WGI1; P9WGY5; P9WGY7; P9WGY9; P9WGZ1;
RFP;ZN;MG;5uhc3-232
Assess
Crystal structure of Mycobacterium tuberculosis transcription initiation complex containing 2ntRNA … Heteromer
P9WGI1; P9WGY5; P9WGY7; P9WGY9; P9WGZ1;
RFP;ZN;MG;5uh63-232
Assess
Crystal structure of Mycobacterium tuberculosis transcription initiation complex Heteromer
P9WGI1; P9WGY5; P9WGY7; P9WGY9; P9WGZ1;
ZN;MG;5uha3-232
Assess
Crystal structure of Mycobacterium tuberculosis transcription initiation complex in complex with D-… Heteromer
P9WGI1; P9WGY5; P9WGY7; P9WGY9; P9WGZ1;
RFP;ZN;MG;88G;5uhg3-232
Assess
Crystal structure of Mycobacterium tuberculosis transcription initiation complex containing 4nt RNA… Heteromer
P9WGI1; P9WGY5; P9WGY7; P9WGY9; P9WGZ1;
RFP;ZN;MG;5uhd3-232
Assess
Crystal structure of Mycobacterium tuberculosis transcription initiation complex in complex with D-… Heteromer
P9WGI1; P9WGY5; P9WGY7; P9WGY9; P9WGZ1;
ZN;MG;88G;5uhe3-232
Assess
Crystal structure of Mycobacterium tuberculosis transcription initiation complex containing 4nt RNA Heteromer
P9WGI1; P9WGY5; P9WGY7; P9WGY9; P9WGZ1;
ZN;MG;5uh83-232
Assess
Crystal structure of Mycobacterium tuberculosis transcription initiation complex in complex with Ri… Heteromer
P9WGI1; P9WGY5; P9WGY7; P9WGY9; P9WGZ1;
RFP;ZN;MG;5uhb3-232
Assess
Crystal structure of Mycobacterium tuberculosis transcription initiation complex in complex with D-… Heteromer
P9WGI1; P9WGY5; P9WGY7; P9WGY9; P9WGZ1;
ZN;MG;88D;5uhf3-232
Assess
Crystal structure of Mycobacterium tuberculosis transcription initiation complex containing 2nt RNA Heteromer
P9WGI1; P9WGY5; P9WGY7; P9WGY9; P9WGZ1;
ZN;MG;5uh93-232
Assess
Single particle cryo em structure of Mycobacterium tuberculosis RNA polymerase in complex with Fida… Heteromer
P9WGI1; P9WGY5; P9WGY7; P9WGY9; P9WGZ1;
ZN;MG;FI8;6fbv3-232
Assess

Homology models

Oligo-stateQMEANTemplateRangeSeq id (%)Ligands
monomer -0.97 6ccv.1.K251-303
91.64
Assess