P9WNV2 (LIGD_MYCTO) Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)

Multifunctional non-homologous end joining DNA repair protein LigD UniProtKBInterProInteractive Modelling

759 aa; Sequence (Fasta) Identical sequences: Mycobacterium tuberculosis: A0A0H3L6Z3; Mycobacterium bovis: A0A0H3M2S5; P59971; A0A679LDJ0; Mycobacterium tuberculosis: A0A045IXS9; Mycobacterium tuberculosis CAS/NITR204: R4MBH6

Sequence Features

 26Interaction with target DNA
 71Interaction with target DNA
 104Interaction with target DNA
 137Interaction with target DNA
 481N6-AMP-lysine intermediate; for ligase activity
 137Manganese 1
 137Manganese 2
 139Manganese 1
 139Manganese 2
 227Manganese 2
 331Manganese 3; via pros nitrogen; catalytic; for 3'- phosphoesterase activity
 337Manganese 3; via tele nitrogen; catalytic; for 3'- phosphoesterase activity
 339Manganese 3; catalytic; for 3'-phosphoesterase activity
 483Manganese 4
 613Manganese 4
 373Transition state stabilizer; for 3'-phosphoesterase activity
 13-16Interaction with target DNA
 53-55Interaction with target DNA
 63-67Interaction with target DNA
 83-88Interaction with target DNA
 137-139Substrate; for polymerase activity
 172-178Substrate; for polymerase activity
 215-220Interaction with target DNA
 227-235Interaction with target DNA
 329-432DNA ligase D, 3'-phosphoesterase domain
IPR014144PF13298
 461-637DNA ligase, ATP-dependent, central
IPR012310PF01068
 657-751DNA ligase, ATP-dependent, C-terminal
IPR012309PF04679

Sequence Alignments

Homology models

Oligo-stateLigandsQMEANTemplateRangeSeq id (%)DownloadAssess
monomer DGT;-0.072iry.1.A2-289
100.00
monomer MG;0.096nhz.1.A452-759
99.35
monomer MG;VN4;-1.715dmp.1.A326-460
49.24
monomer -3.541x9n.1.D458-697
34.87