P27958 (POLG_HCVH) Hepatitis C virus genotype 1a (isolate H) (HCV)

Genome polyprotein UniProtKBInterProInteractive Modelling

3011 aa; Sequence (Fasta)

Molecule Processing
Core protein p21
Core protein p19
Envelope glycoprotein E1
Envelope glycoprotein E2
Viroporin p7
Protease NS2-3
Serine protease NS3
Non-structural protein 4A
Non-structural protein 4B
Non-structural protein 5A
RNA-directed RNA polymerase

Sequence Features

 952For protease NS2-3 activity; shared with dimeric partner
 972For protease NS2-3 activity; shared with dimeric partner
 993For protease NS2-3 activity; shared with dimeric partner
 1083Charge relay system; for serine protease NS3 activity
 1107Charge relay system; for serine protease NS3 activity
 1165Charge relay system; for serine protease NS3 activity
 1123Zinc
 1125Zinc
 1171Zinc
 1175Zinc
 2011Zinc
 2029Zinc
 2031Zinc
 2052Zinc
 212V -> I (in strain: Isolate H77)
 297H -> R (in strain: Isolate H77)
 303D -> S (in strain: Isolate H77)
 321N -> D (in strain: Isolate H77)
 360K -> A (in strain: Isolate H77)
 391N -> S (in strain: Isolate H77)
 394R -> H (in strain: Isolate H77)
 431E -> D (in strain: Isolate H77)
 434N -> T (in strain: Isolate H77)
 444Q -> R (in strain: Isolate H77)
 457A -> T (in strain: Isolate H77)
 589Y -> H (in strain: Isolate H77)
 602R -> W (in strain: Isolate H77)
 650E -> G (in strain: Isolate H77)
 773C -> R (in strain: Isolate H77)
 787V -> A (in strain: Isolate H77)
 790L -> F (in strain: Isolate H77)
 877T -> M (in strain: Isolate H77)
 883A -> T (in strain: Isolate H77)
 948C -> Y (in strain: Isolate H77)
 954A -> T (in strain: Isolate H77)
 1026L -> Q (in strain: Isolate H77)
 1033A -> T (in strain: Isolate H77)
 1049G -> S (in strain: Isolate H77)
 1100T -> M (in strain: Isolate H77)
 1121T -> A (in strain: Isolate H77)
 1173T -> A (in strain: Isolate H77)
 1202E -> G (in strain: Isolate H77)
 1214S -> P (in strain: Isolate H77)
 1247K -> Q (in strain: Isolate H77)
 1303A -> G (in strain: Isolate H77)
 1327S -> L (in strain: Isolate H77)
 1556G -> E (in strain: Isolate H77)
 1608R -> W (in strain: Isolate H77)
 1742H -> Q (in strain: Isolate H77)
 1893A -> V (in strain: Isolate H77)
 1905R -> H (in strain: Isolate H77)
 1940A -> V (in strain: Isolate H77)
 2043T -> A (in strain: Isolate H77)
 2053K -> R (in strain: Isolate H77)
 2061F -> L (in strain: Isolate H77)
 2102V -> I (in strain: Isolate H77)
 2185A -> E (in strain: Isolate H77)
 2283P -> R (in strain: Isolate H77)
 2296L -> P (in strain: Isolate H77)
 2341P -> S (in strain: Isolate H77)
 2355S -> P (in strain: Isolate H77)
 2400L -> F (in strain: Isolate H77)
 2425S -> T (in strain: Isolate H77)
 2469K -> Q (in strain: Isolate H77)
 2512A -> T (in strain: Isolate H77)
 2637L -> F (in strain: Isolate H77)
 2703R -> G (in strain: Isolate H77)
 2715R -> C (in strain: Isolate H77)
 2755S -> N (in strain: Isolate H77)
 2925W -> R (in strain: Isolate H77)
 2933A -> S (in strain: Isolate H77)
 2937K -> R (in strain: Isolate H77)
 2960T -> A (in strain: Isolate H77)
 169-189Helical
 359-379Helical
 726-746Helical
 758-778Helical
 783-803Helical
 814-834Helical
 882-902Helical
 929-949Helical
 1658-1678Helical
 1806-1826Helical
 1829-1849Helical
 1851-1871Helical
 1882-1902Helical
 1973-2002
 2991-3011Helical
 1230-1237ATP
 177-178Cleavage; by host signal peptidase
 191-192Cleavage; by host signal peptidase
 383-384Cleavage; by host signal peptidase
 746-747Cleavage; by host signal peptidase
 809-810Cleavage; by host signal peptidase
 1026-1027Cleavage; by protease NS2-3
 1657-1658Cleavage; by serine protease NS3
 1711-1712Cleavage; by serine protease NS3
 1972-1973Cleavage; by serine protease NS3
 2420-2421Cleavage; by serine protease NS3
 2114-2162
 564-566CGA -> RGV (in strain: Isolate H77)
 1839-1840LD -> IG (in strain: Isolate H77)
 1898-1900FAS -> CAA (in strain: Isolate H77)
 2-115Hepatitis C virus core protein, N-terminal
IPR002522PF01543
 116-190Hepatitis C virus core protein, C-terminal
IPR002521PF01542
 193-382Hepatitis C virus envelope glycoprotein E1
IPR002519PF01539
 386-729Hepatitis C virus non-structural protein E2/NS1
IPR002531PF01560
 811-1005Hepatitis C virus non-structural protein NS2
IPR002518PF01538
 1056-1203Peptidase S29, hepatitis C virus NS3 protease
IPR004109PF02907
 1294-1355DEAD box, Flavivirus
IPR011492PF07652
 1658-1711Hepatitis C virus non-structural protein NS4a
IPR000745PF01006
 1728-1921Hepatitis C virus non-structural protein NS4b
IPR001490PF01001
 1974-1996Hepatitis C virus non-structural 5a protein
IPR002868PF01506
 2006-2067NS5A domain 1a
IPR013192PF08300
 2068-2168Hepatitis C virus non-structural 5a, 1B domain
IPR013193PF08301
 2179-2420Hepatitus C virus, NS5a, C-terminal
IPR024350PF12941
 2423-2932RNA dependent RNA polymerase, hepatitis C virus
IPR002166PF00998

Sequence Alignments

Core protein p21 2-191; PRO_0000037566

DescriptionOligo-stateLigandsStructureRangeDownloadAssess
SOLUTION STRUCTURE OF THE HEPATITIS C VIRUS N-TERMINAL CAPSID PROTEIN 2-45 [C-HCV(2-45)]monomer 1cwx 2-45

Core protein p19 2-177; PRO_0000037567

DescriptionOligo-stateLigandsStructureRangeDownloadAssess
SOLUTION STRUCTURE OF THE HEPATITIS C VIRUS N-TERMINAL CAPSID PROTEIN 2-45 [C-HCV(2-45)]monomer 1cwx 2-45

Envelope glycoprotein E1 192-383; PRO_0000037569

DescriptionOligo-stateLigandsStructureRangeDownloadAssess
Structure of the Hepatitis C Envelope Glycoprotein E1 antigenic region 314-324 bound to the cross-n… Heteromer
GOL;CL;4n0y 314-324

Envelope glycoprotein E2 384-746; PRO_0000037570

DescriptionOligo-stateLigandsStructureRangeDownloadAssess
Structure of Hepatitis C Virus Envelope Glycoprotein E2mc3-v1 redesigned core from genotype 1a boun… Heteromer
NAG;NAG;6uyd 421-645
Structure of Hepatitis C Virus Envelope Glycoprotein E2 core bound to broadly neutralizing antibody… Heteromer
NAG;NAG;4mwf 421-645
STRUCTURE OF THE HEPATITIS C VIRUS ENVELOPE GLYCOPROTEIN E2 ANTIGENIC 2 REGION 412-423 BOUND TO THE… Heteromer
4xvj 412-423
Structure of Hepatitis C Virus Envelope glycoprotein E2 antigenic region 434-446 bound to the broad… Heteromer
4z0x 435-446
Three dimensional structure of broadly neutralizing human anti - Hepatitis C virus (HCV) glycoprote… Heteromer
SO4;4jzn 435-446
Structure of the Hepatitis C virus envelope glycoprotein E2 antigenic region 412-423 bound to the 2… Heteromer
6bzy 412-422
Crystal structure of Fab C2 in complex with a Cyclic variant of Hepatitis C Virus E2 epitope I Heteromer
5eoc 412-422
Three dimensional structure of broadly neutralizing human anti - Hepatitis C virus (HCV) glycoprote… Heteromer
4jzo 436-446
Structure of the Hepatitis C virus envelope glycoprotein E2 antigenic region 412-423 bound to the G… Heteromer
6bzv 413-422
Structure of the Hepatitis C virus envelope glycoprotein E2 antigenic region 412-423 bound to the b… Heteromer
6bzu 412-421
Three dimensional structure of broadly neutralizing human anti - Hepatitis C virus (HCV) glycoprote… Heteromer
5fgc 415-423
Structure of the Hepatitis C virus envelope glycoprotein E2 antigenic region 412-423 bound to the G… Heteromer
6bzw 413-421
Structure of HCV E2 glycoprotein antigenic Epitope II bound to the broadly neutralizing antibody HC… Heteromer
5erw 438-446
Crystal structure of non-neutralizing antibody in complex with Epitope II of HCV E2 Heteromer
A2NHM3; Q99LC4;
4q0x 434-442
Three dimensional structure of broadly neutralizing human anti - Hepatitis C virus (HCV) glycoprote… Heteromer
GOL;SO4;5fgb 417-421
Oligo-stateLigandsQMEANTemplateRangeSeq id (%)DownloadAssess
monomer NAG;-2.336mej.1.C405-645
85.88

Protease NS2-3 810-1026; PRO_0000037572

DescriptionOligo-stateLigandsStructureRangeDownloadAssess
Structure of the catalytic domain of hepatitis C virus NS2homo-2-mer BOG;2hd0 903-1026

Serine protease NS3 1027-1657; PRO_0000037573

DescriptionOligo-stateLigandsStructureRangeDownloadAssess
Crystal structure of the S139A mutant of Hepatitis C Virus NS3/4A protease Heteromer
ZN;NA;2o8m 1027-1207
Structure of NS3 complexed with a ketoamide inhibitor SCh491762 Heteromer
ZN;BME;HU1;2oc0 1027-1207
HCV NS3 Protease Domain with a Ketoamide Inhibitor Covalently bound. Heteromer
ZN;BNH;2a4r 1027-1207
crystal structure of HCV NS3-4A R155K muntant Heteromer
ZN;2oin 1027-1207
Discovery of the HCV NS3/4A Protease Inhibitor SCH503034. Key Steps in Structure-Based Optimization Heteromer
ZN;2obq 1027-1206
HCV NS3 protease domain with NS4a peptide and a ketoamide inhibitor with P1 and P2 cyclopropylalann… Heteromer
ZN;BN6;2f9v 1027-1207
Structure of Hepatitis C Viral NS3 protease domain complexed with NS4A peptide and ketoamide SCH503… Heteromer
ZN;BME;HU5;2oc8 1027-1207
Structure of Hepatitis C Viral NS3 protease domain complexed with NS4A peptide and ketoamide SCH571… Heteromer
ZN;BME;HU4;2oc7 1027-1207
Structure of the HCV NS3/4A Protease Inhibitor CVS4819 Heteromer
ZN;HU2;2oc1 1027-1207
Molecular mechanisms of viral and host-cell substrate recognition by HCV NS3/4A protease Heteromer
Q8IUC6;
SO4;ZN;3rc4 1026-1206
Molecular mechanisms of viral and host-cell substrate recognition by HCV NS3/4A protease Heteromer
Q7Z434;
SO4;ZN;3rc5 1026-1206
M9A HCV Protease complex with pentapeptide keto-amide inhibitor Heteromer
O39914;
ZN;AKP;1rgq 1027-1207
CRYSTAL STRUCTURE OF HCV NS3 PROTEASE DOMAIN:NS4A PEPTIDE COMPLEX WITH COVALENTLY BOUND INHIBITOR (… Heteromer
O39914;
ZN;TRL;1n1l 1027-1206
Protein-ligand complex of a novel macrocyclic HCV NS3 protease inhibitor derived from amino cyclic … Heteromer
C9WU77;
TR8;ZN;MG;2xni 1027-1206
HCV NS3 PROTEASE DOMAIN:NS4A PEPTIDE COMPLEX Heteromer
O39914;
ZN;1a1r 1028-1206
A T cell receptor in complex with HLA-A0201 restricted Hepatitis C virus NS3 peptide (KLVALGINAV) Heteromer
P04439; P61769;
5yxn 1406-1415
Crystal structure of 1406 TCR bound to HLA-A2 with HCV 1406-1415 antigen peptide Heteromer
P04439; P61769;
5jzi 1406-1415
an affinity enhanced T cell receptor in complex with HLA-A0201 restricted HCV NS3 peptide KLVALGINAV Heteromer
P04439; P61769;
5yxu 1406-1415
STRUCTURE OF THE HEPATITIS C VIRUS RNA HELICASE DOMAINhomo-2-mer CA;1hei 1213-1655
HEPATITIS C VIRUS NS3 HELICASE DOMAIN COMPLEXED WITH SINGLE STRANDED SDNAmonomer SO4;1a1v 1216-1650
CRYSTAL STRUCTURE OF HEPATIS C VIRUS PROTEASE (NS3) COMPLEXED WITH TRIPEPTIDIC ACYL SULFONAMIDE INH…monomer Z1B;ZN;CL;ACT;6bqj 1030-1208
CRYSTAL STRUCTURE OF HEPATIS C VIRUS PROTEASE (NS3) COMPLEXED WITH TRIPEPTIDIC ACYL SULFONAMIDE INH…monomer Z1E;ZN;6bqk 1030-1208
Solution Structure of an Engineered Arginine-rich Subdomain 2 of the Hepatitis C Virus NS3 RNA Heli…monomer 1jr6 1353-1507
Solution structure of an engineered arginine-rich subdomain 2 of the hepatitis C virus NS3 RNA heli…monomer 1onb 1353-1507
Oligo-stateLigandsQMEANTemplateRangeSeq id (%)DownloadAssess
monomer MG;-0.185wdx.1.A1027-1657
78.92

Non-structural protein 4A 1658-1711; PRO_0000037574

DescriptionOligo-stateLigandsStructureRangeDownloadAssess
Crystal structure of the S139A mutant of Hepatitis C Virus NS3/4A protease Heteromer
ZN;NA;2o8m 1678-1696
Structure of NS3 complexed with a ketoamide inhibitor SCh491762 Heteromer
ZN;BME;HU1;2oc0 1677-1696
HCV NS3 Protease Domain with a Ketoamide Inhibitor Covalently bound. Heteromer
ZN;BNH;2a4r 1677-1696
crystal structure of HCV NS3-4A R155K muntant Heteromer
ZN;2oin 1678-1696
Discovery of the HCV NS3/4A Protease Inhibitor SCH503034. Key Steps in Structure-Based Optimization Heteromer
ZN;2obq 1677-1696
HCV NS3 protease domain with NS4a peptide and a ketoamide inhibitor with P1 and P2 cyclopropylalann… Heteromer
ZN;BN6;2f9v 1677-1696
Structure of Hepatitis C Viral NS3 protease domain complexed with NS4A peptide and ketoamide SCH503… Heteromer
ZN;BME;HU5;2oc8 1677-1696
Structure of Hepatitis C Viral NS3 protease domain complexed with NS4A peptide and ketoamide SCH571… Heteromer
ZN;BME;HU4;2oc7 1677-1696
Structure of the HCV NS3/4A Protease Inhibitor CVS4819 Heteromer
ZN;HU2;2oc1 1677-1696
Crystal Structure of Hepatitis C Virus NS3.4A protease Heteromer
Q91RS4;
GG4;2p59 1678-1696
Crystal structure of HCV NS3-4A V36M mutant Heteromer
A1Z093;
ZN;2qv1 1678-1693

Non-structural protein 4B 1712-1972; PRO_0000037575

DescriptionOligo-stateLigandsStructureRangeDownloadAssess
The solution structure of HCV NS4B(40-69)monomer 2jxf 1751-1780
Solution structure of HCV NS4B(227-254)monomer 2kdr 1938-1965

Non-structural protein 5A 1973-2420; PRO_0000037576

DescriptionOligo-stateLigandsStructureRangeDownloadAssess
NMR structure of the membrane anchor domain (1-31) of the nonstructural protein 5A (NS5A) of hepati…monomer 1r7c 1973-2003
NMR structure of the membrane anchor domain (1-31) of the nonstructural protein 5A (NS5A) of hepati…monomer 1r7d 1973-2003
NMR structure of the membrane anchor domain (1-31) of the nonstructural protein 5A (NS5A) of hepati…monomer 1r7g 1973-2003
NMR structure of the membrane anchor domain (1-31) of the nonstructural protein 5A (NS5A) of hepati…monomer 1r7e 1973-2003
NMR structure of the membrane anchor domain (1-31) of the nonstructural protein 5A (NS5A) of hepati…monomer 1r7f 1973-2003

RNA-directed RNA polymerase 2421-3011; PRO_0000037577

DescriptionOligo-stateLigandsStructureRangeDownloadAssess
HCV-H77 NS5B Polymerase Complexed With GTPmonomer GTP;MG;2xi3 2421-2982
HCV-H77 NS5B Apo Polymerasemonomer SO4;2xi2 2421-2982
Structure of the C-terminal membrane domain of HCV NS5B proteinmonomer 2n1p 2982-3011