Q03053 (POLG_CXB5P) Coxsackievirus B5 (strain Peterborough / 1954/UK/85)

Genome polyprotein UniProtKBInterProInteractive Modelling

2185 aa; Sequence (Fasta)

Molecule Processing
P1
Capsid protein VP0
Capsid protein VP4
Capsid protein VP2
Capsid protein VP3
Capsid protein VP1
P2
Protease 2A
Protein 2B
Protein 2C
P3
Protein 3AB
Protein 3A
Viral protein genome-linked
Protein 3CD
Protease 3C
RNA-directed RNA polymerase

Sequence Features

 872For protease 2A activity
 890For protease 2A activity
 961For protease 2A activity
 1580For protease 3C activity
 1611For protease 3C activity
 1687For protease 3C activity
 907Zinc; structural
 909Zinc; structural
 967Zinc; structural
 969Zinc; via pros nitrogen; structural
 1369Zinc
 1381Zinc
 1386Zinc
 1956Magnesium 1; catalytic; for RdRp activity
 1956Magnesium 2; catalytic; for RdRp activity
 2052Magnesium 1; catalytic; for RdRp activity
 2052Magnesium 2; catalytic; for RdRp activity
 1125Involved in the interaction with host RTN3
 1496-1511
 1369-1386C4-type; degenerate
 69-70Cleavage; by autolysis
 330-331Cleavage; by protease 3C
 851-852Cleavage; by autolysis
 1001-1002Cleavage; by protease 3C
 1100-1101Cleavage; by protease 3C
 1429-1430Cleavage; by protease 3C
 1518-1519Cleavage; by protease 3C
 1540-1541Cleavage; by protease 3C
 1723-1724Cleavage; by protease 3C
 2-69Picornavirus coat protein VP4
IPR003138PF02226
 93-300Picornavirus capsid
IPR001676PF00073
 359-524Picornavirus capsid
IPR001676PF00073
 614-781Picornavirus capsid
IPR001676PF00073
 870-996Peptidase C3, picornavirus core protein 2A
IPR000081PF00947
 1001-1100Picornavirus 2B protein
IPR002527PF01552
 1226-1323Helicase, superfamily 3, single-stranded DNA/RNA virus
IPR000605PF00910
 1434-1490Poliovirus 3A protein-like
IPR014838PF08727
 1541-1706Peptidase C3A/C3B, picornaviral
IPR000199PF00548
 1750-2160RNA-directed RNA polymerase, C-terminal domain
IPR001205PF00680

Sequence Alignments

P1 2-851; PRO_0000426327

Oligo-stateLigandsQMEANTemplateRangeSeq id (%)DownloadAssess
monomer -3.061oop.1.A581-851
91.52
monomer -4.385c9a.1.B11-330
56.66

Capsid protein VP0 2-330; PRO_0000426328

Oligo-stateLigandsQMEANTemplateRangeSeq id (%)DownloadAssess
monomer -4.385c9a.1.B11-330
56.66

Capsid protein VP1 566-851; PRO_0000426332

Oligo-stateLigandsQMEANTemplateRangeSeq id (%)DownloadAssess
monomer -3.061oop.1.A581-851
91.52

P3 1430-2185; PRO_0000426335

Oligo-stateLigandsQMEANTemplateRangeSeq id (%)DownloadAssess
monomer -0.722ijd.2.A1541-2185
70.03

Protein 3CD 1541-2185; PRO_0000426338

Oligo-stateLigandsQMEANTemplateRangeSeq id (%)DownloadAssess
monomer -0.722ijd.2.A1541-2185
70.03