Q04095 (POL_RSVSA) Avian leukosis virus RSA (RSV-SRA) (Rous sarcoma virus (strainSchmidt-Ruppin A))

Gag-Pol polyprotein UniProtKBInterProInteractive Modelling

1603 aa; Sequence (Fasta)

Molecule Processing
Matrix protein p19
p2A
p2B
p10
Capsid protein p27, alternate cleaved 2
Capsid protein p27, alternate cleaved 1
p3
Nucleocapsid protein p12
Protease p15
Reverse transcriptase beta-subunit
Reverse transcriptase alpha-subunit
Integrase
p4

Sequence Features

 614For protease activity; shared with dimeric partner
 815Magnesium; catalytic; for reverse transcriptase activity
 890Magnesium; catalytic; for reverse transcriptase activity
 891Magnesium; catalytic; for reverse transcriptase activity
 1158Magnesium; catalytic; for RNase H activity
 1192Magnesium; catalytic; for RNase H activity
 1213Magnesium; catalytic; for RNase H activity
 1272Magnesium; catalytic; for RNase H activity
 1344Magnesium; catalytic; for integrase activity
 1401Magnesium; catalytic; for integrase activity
 1437Magnesium; catalytic; for integrase activity
 418Involved in capsid protein dimerization upon acidification
 430Involved in capsid protein dimerization upon acidification
 507-524CCHC-type 1
 533-550CCHC-type 2
 1280-1321Integrase-type
 1502-1550Integrase-type
 155-156Cleavage; by viral protease p15
 166-167Cleavage; by viral protease p15
 177-178Cleavage; by viral protease p15
 239-240Cleavage; by viral protease p15
 476-477Cleavage; by viral protease p15
 479-480Cleavage; by viral protease p15
 488-489Cleavage; by viral protease p15
 577-578Cleavage; by viral protease p15
 708-709Cleavage; by viral protease p15
 1280-1281Cleavage; by viral protease p15
 1567-1568Cleavage; by viral protease p15
 2-87Retroviral Gag polyprotein, M
IPR004028PF02813
 258-450Retroviral nucleocapsid protein Gag
IPR000721PF00607
 508-524Zinc finger, CCHC-type
IPR001878PF00098
 584-699Retropepsins
IPR018061PF00077
 769-938Reverse transcriptase domain
IPR000477PF00078
 953-999Reverse transcriptase thumb
IPR010661PF06817
 1285-1321Integrase, N-terminal zinc-binding domain
IPR003308PF02022
 1337-1429Integrase, catalytic core
IPR001584PF00665
 1518-1547Integrase, C-terminal, retroviral
IPR001037PF00552

Sequence Alignments

Reverse transcriptase beta-subunit 709-1567; PRO_0000397056

Oligo-stateLigandsQMEANTemplateRangeSeq id (%)DownloadAssess
monomer ZN;-0.225ejk.1.A1281-1549
96.67
monomer ZN;-0.305ejk.1.B1281-1549
96.67
monomer ZN;-0.535ejk.1.H1281-1549
96.67
monomer -4.055tuq.1.A713-1275
26.49
monomer -3.312jle.1.B715-1145
26.74

Reverse transcriptase alpha-subunit 709-1280; PRO_0000040982

Oligo-stateLigandsQMEANTemplateRangeSeq id (%)DownloadAssess
monomer -4.055tuq.1.A713-1275
26.49
monomer -3.312jle.1.B715-1145
26.74

Integrase 1281-1567; PRO_0000040983

Oligo-stateLigandsQMEANTemplateRangeSeq id (%)DownloadAssess
monomer ZN;-0.225ejk.1.A1281-1549
96.67
monomer ZN;-0.305ejk.1.B1281-1549
96.67
monomer ZN;-0.535ejk.1.H1281-1549
96.67