Q04781 | SWISS-MODEL Repository

Q04781 (LTN1_YEAST) Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)

E3 ubiquitin-protein ligase listerin UniProtKB InterPro STRING Interactive Modelling

1562 aa; Sequence (Fasta) ; 1 identical sequence: Saccharomyces cerevisiae: A0A8H4BYV3

It is possible new templates exist for this target since these models were created.

Available Structures

9 Experimental Structures

Description	PDB ID	Oligo-state	Range	Ligands
Yeast RQC complex in state F	8agt SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P02406; P04449; P04456; P04650; P05317; P05737; P05738; P05739; P05740; P05743; P05744; P05745; P05747; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CH08; P0CX23; P0CX25; P0CX27; P0CX41; P0CX43; P0CX45; P0CX49; P0CX53; P0CX82; P0CX84; P0CX86; P10664; P14120; P14126; P17076; P23301; P26321; P26784; P36105; P38061; P41805; P49166; P49167; P87262; Q02753; Q12522; Q12532; Q12690;	2-1559	13×MG; 7×ZN;
Assess
Yeast RQC complex in state with the RING domain of Ltn1 in the IN position	8agx SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P02406; P04449; P04456; P04650; P05317; P05737; P05738; P05739; P05740; P05743; P05744; P05745; P05747; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CH08; P0CX23; P0CX25; P0CX27; P0CX41; P0CX43; P0CX45; P0CX49; P0CX53; P0CX82; P0CX84; P0CX86; P10664; P14120; P14126; P17076; P23301; P26321; P26784; P36105; P38061; P41805; P49166; P49167; P87262; Q02753; Q12532; Q12690;	2-1559	13×MG; 7×ZN; 1×SPD;
Assess
Yeast RQC complex in state E	8agu SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P02406; P04449; P04456; P04650; P05317; P05737; P05738; P05739; P05740; P05743; P05744; P05745; P05747; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CH08; P0CX23; P0CX25; P0CX27; P0CX41; P0CX43; P0CX45; P0CX49; P0CX54; P0CX82; P0CX84; P0CX86; P10664; P14120; P14126; P17076; P23301; P26321; P26784; P36105; P38061; P41805; P49166; P49167; P87262; Q02753; Q12522; Q12532; Q12690;	2-1559	13×MG; 7×ZN; 1×SPD;
Assess
Yeast RQC complex in state G	8aaf SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P02406; P04449; P04456; P04650; P05317; P05737; P05738; P05739; P05740; P05743; P05744; P05745; P05747; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CH08; P0CX23; P0CX25; P0CX27; P0CX41; P0CX43; P0CX45; P0CX49; P0CX53; P0CX82; P0CX84; P0CX86; P10664; P14120; P14126; P17076; P23301; P26321; P26784; P36105; P38061; P41805; P49166; P49167; P87262; Q02753; Q12522; Q12532; Q12690;	2-1559	13×MG; 7×ZN; 1×SPD;
Assess
Yeast RQC complex in state H	8agv SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P02406; P04449; P04456; P04650; P05317; P05737; P05738; P05739; P05740; P05743; P05744; P05745; P05747; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CH08; P0CX23; P0CX25; P0CX27; P0CX41; P0CX43; P0CX45; P0CX49; P0CX54; P0CX82; P0CX84; P0CX86; P10664; P14120; P14126; P17076; P23301; P26321; P26784; P36105; P38061; P41805; P49166; P49167; P87262; Q02753; Q12522; Q12532; Q12690;	2-1559	13×MG; 7×ZN;
Assess
Yeast RQC complex in state with the RING domain of Ltn1 in the OUT position	8agz SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P02406; P04449; P04456; P04650; P05317; P05737; P05738; P05739; P05740; P05743; P05744; P05745; P05747; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CH08; P0CX23; P0CX25; P0CX27; P0CX41; P0CX43; P0CX45; P0CX49; P0CX53; P0CX82; P0CX84; P0CX86; P10664; P14120; P14126; P17076; P23301; P26321; P26784; P36105; P38061; P41805; P49166; P49167; P87262; Q02753; Q12522; Q12532; Q12690;	2-1559	13×MG; 7×ZN; 1×SPD;
Assess
Yeast RQC complex in state D	8agw SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P02406; P04449; P04456; P04650; P05317; P05737; P05738; P05739; P05740; P05743; P05744; P05745; P05747; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CH08; P0CX23; P0CX25; P0CX27; P0CX41; P0CX43; P0CX45; P0CX49; P0CX53; P0CX82; P0CX84; P0CX86; P10664; P14120; P14126; P17076; P26321; P26784; P36105; P38061; P41805; P49166; P49167; P87262; Q02753; Q12522; Q12532; Q12690;	2-1559	13×MG; 7×ZN; 1×SPD;
Assess
Structure of the conserved yeast listerin (Ltn1) N-terminal domain, MONOCLINIC FORM	5fg0 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	monomer	14-420	1×K; 1×EDO;
Assess
Structure of the conserved yeast listerin (Ltn1) selenomethionine-substituted N-terminal domain, TR…	5fg1 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	monomer	14-419	1×K;
Assess

2 SWISS-MODEL models

Template	Oligo-state	QMEANDisCo	Range	Ligands	Trg-Tpl Seq id (%)
8aaf.1.j	monomer	0.82	2-1559	2×ZN;	100.00
Assess
6bvz.1.A	monomer	0.52	48-273		12.95
Assess

Model ID	Oligo-state	Avg pLDDT	Range	Trg-Mdl Seq Id (%)

Model ID	Oligo-state	Avg Confidence	Range	Trg-Mdl Seq id (%)

Alignments