Q08004 | SWISS-MODEL Repository

Q08004 (BUD20_YEAST) Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)

Bud site selection protein 20 UniProtKB InterPro STRING Interactive Modelling

166 aa; Sequence (Fasta) ; 2 identical sequences: Saccharomyces cerevisiae: A0A8H4BX85; Saccharomyces pastorianus: A0A6C1DVG3

It is possible new templates exist for this target since these models were created.

Available Structures

16 Experimental Structures

Description	PDB ID	Oligo-state	Range	Ligands
NPC-trapped pre-60S particle	8hfr SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P02406; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05747; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CX23; P0CX25; P0CX27; P0CX41; P0CX43; P0CX45; P0CX49; P0CX53; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P26321; P26784; P33201; P34232; P36105; P38061; P38202; P38861; P39715; P40078; P47019; P49166; P49167; P53742; P87262; Q02326; Q02753; Q02892; Q03862; Q07915; Q08687; Q12522; Q12690; Q99257;	1-143	237×MG;
Assess
Cryo-EM structure of late nuclear (LN) pre-60S ribosomal subunit	6n8j SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P02406; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05747; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CX23; P0CX25; P0CX27; P0CX41; P0CX45; P0CX49; P0CX53; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P26321; P26784; P33201; P36105; P38061; P38202; P40078; P49166; P49167; P53742; P87262; Q02326; Q02753; Q02892; Q07915; Q12522; Q12690;	1-131	2×GTP; 2×MG;
Assess
Cryo-EM structure of early cytoplasmic-late (ECL) pre-60S ribosomal subunit	6n8l SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P02406; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05747; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CX23; P0CX25; P0CX27; P0CX41; P0CX45; P0CX49; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P26321; P26784; P33201; P36105; P38061; P38202; P38861; P49166; P49167; P87262; Q02326; Q02753; Q02892; Q07915; Q12522; Q12690;	1-131
Assess
Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1 D52A strain	7uqz SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P02406; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CX23; P0CX25; P0CX41; P0CX45; P0CX49; P0CX53; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P25382; P26321; P26784; P33201; P36105; P36160; P38061; P38202; P38779; P40010; P40078; P40693; P47019; P49166; P49167; P53188; P53261; P53742; P53927; P87262; Q02326; Q02753; Q02892; Q03862; Q07915; Q08746; Q12080; Q12522; Q12690;	1-131	81×MG; 3×B3P; 5×ZN; 2×GDP; 1×K;
Assess
Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state	7uoo SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P02406; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CX23; P0CX25; P0CX41; P0CX45; P0CX49; P0CX53; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P25382; P26321; P26784; P33201; P36105; P36160; P38061; P38202; P38779; P40010; P40078; P40693; P47019; P49166; P49167; P53188; P53261; P53742; P53927; P87262; Q02326; Q02753; Q02892; Q03862; Q07915; Q08746; Q12080; Q12522; Q12690;	1-131	81×MG; 3×B3P; 5×ZN; 1×GDP; 1×GTP; 1×K;
Assess
Structure of the Nop53 pre-60S particle bound to the exosome nuclear cofactors	6ft6 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P02406; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CX23; P0CX25; P0CX41; P0CX45; P0CX49; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P25382; P26321; P26784; P33201; P36105; P36160; P38061; P38202; P38801; P40010; P40078; P47047; P49166; P49167; P53188; P53261; P53742; P87262; Q02326; Q02753; Q02892; Q03862; Q07915; Q08746; Q12149; Q12522; Q12690;	1-131	4×ZN; 2×GTP; 2×MG;
Assess
Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a Spb1 D52A suppr…	7v08 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P02406; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CX23; P0CX25; P0CX41; P0CX45; P0CX49; P0CX53; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P25382; P26321; P26784; P33201; P36105; P36160; P38061; P38202; P38779; P40010; P40078; P40693; P47019; P49166; P49167; P53188; P53261; P53742; P53927; P87262; Q02326; Q02753; Q02892; Q03862; Q07915; Q08746; Q12080; Q12522; Q12690;	1-131	81×MG; 3×B3P; 5×ZN; 2×GDP; 1×K;
Assess
Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1-D52A strai…	7uqb SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P02406; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CX23; P0CX25; P0CX41; P0CX45; P0CX49; P0CX53; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P25382; P26321; P26784; P33201; P36105; P36160; P38061; P38202; P38779; P40010; P40078; P40693; P47019; P49166; P49167; P53188; P53261; P53742; P53927; P87262; Q02326; Q02753; Q02892; Q03862; Q07915; Q08746; Q12080; Q12522; Q12690;	1-131	3×B3P; 81×MG; 5×ZN; 2×GDP; 1×ALF; 1×K;
Assess
Cryo-Em structure of eukaryotic pre-60S ribosome subunit from Saccharomyces cerevisiae rpf2 delta 2…	6m62 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P02406; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CX23; P0CX25; P0CX41; P0CX45; P0CX49; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P25382; P26321; P26784; P33201; P36105; P36160; P38061; P38202; P38779; P40010; P40078; P40693; P49166; P49167; P53188; P53261; P53742; P53927; P87262; Q02326; Q02753; Q02892; Q03862; Q07915; Q08746; Q12080; Q12522; Q12690;	1-131	4×ZN; 2×GTP; 2×MG;
Assess
Cryo-em structure of eukaryotic pre-60S ribosomal subunits	3jct SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P02406; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CX23; P0CX25; P0CX41; P0CX45; P0CX49; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P25382; P26321; P26784; P33201; P36105; P36160; P38061; P38202; P38779; P40010; P40078; P40693; P49166; P49167; P53188; P53261; P53742; P53927; P87262; Q02326; Q02753; Q02892; Q03862; Q07915; Q08746; Q12080; Q12522; Q12690;	1-131	4×ZN; 2×GTP; 2×MG;
Assess
Cryo-EM structure of early cytoplasmic-immediate (ECI) pre-60S ribosomal subunit	6n8k SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P02406; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05747; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CX23; P0CX25; P0CX27; P0CX41; P0CX45; P0CX49; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P26321; P26784; P33201; P36105; P38061; P38202; P38861; P49166; P49167; P87262; Q02326; Q02753; Q02892; Q07915; Q12522; Q12690;	1-131	1×GTP; 1×MG;
Assess
Rix1-Rea1 pre-60S particle - full composite structure	6ylh SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P02406; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CX23; P0CX25; P0CX41; P0CX43; P0CX45; P0CX49; P0CX53; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P25382; P26321; P26784; P33201; P36105; P38061; P38202; P38803; P38883; P40010; P40078; P47019; P49166; P49167; P53188; P53313; P53742; P53877; P87262; Q02326; Q02753; Q02892; Q03862; Q07915; Q12019; Q12522; Q12690;	2-131	4×ZN; 2×GTP; 2×MG;
Assess
Rix1-Rea1 pre-60S particle - 60S core, body 1 (rigid body refinement)	6ylg SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P02406; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CX23; P0CX25; P0CX41; P0CX43; P0CX45; P0CX49; P0CX53; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P25382; P26321; P26784; P33201; P36105; P38061; P38202; P38803; P40010; P40078; P47019; P49166; P49167; P53188; P53313; P53742; P87262; Q02326; Q02753; Q02892; Q03862; Q07915; Q12522; Q12690;	2-131	4×ZN; 2×GTP; 2×MG;
Assess
Structure of pre-60S particle bound to DRG1(AFG2).	7z34 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P02406; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05747; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CX23; P0CX25; P0CX27; P0CX41; P0CX45; P0CX49; P0CX53; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P26321; P26784; P32794; P33201; P36105; P38061; P38202; P38861; P40078; P49166; P49167; P87262; Q02326; Q02753; Q02892; Q03862; Q07915; Q12522; Q12690;	1-124	11×AGS; 1×MG;
Assess
Cryo-EM structure of pre-60S ribosomal subunit, unmethylated G2922	7ug6 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P02406; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CX23; P0CX25; P0CX41; P0CX45; P0CX49; P0CX53; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P25382; P26321; P26784; P33201; P36105; P36160; P38061; P38202; P40010; P40078; P47019; P49166; P49167; P53742; P87262; Q02326; Q02753; Q02892; Q07915; Q08746; Q12522; Q12690;	1-111	1×GDP; 1×MG;
Assess
pre-60S State NE2 (TAP-Flag-Nop53)	6yly SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P02406; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05748; P05749; P0C2H6; P0C2H8; P0CX23; P0CX25; P0CX41; P0CX45; P0CX49; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P26784; P33201; P36105; P38061; P38202; P38779; P40010; P40078; P40693; P49166; P49167; P53261; P53927; P87262; Q02326; Q02753; Q02892; Q07915; Q12080; Q12522; Q12690;	1-96	3×ZN;
Assess

1 SWISS-MODEL model

Template	Oligo-state	QMEANDisCo	Range	Ligands	Trg-Tpl Seq id (%)
8hfr.1.w	monomer	0.83	1-143		100.00
Assess

Model ID	Oligo-state	Avg pLDDT	Range	Trg-Mdl Seq Id (%)

Model ID	Oligo-state	Avg Confidence	Range	Trg-Mdl Seq id (%)

Q08004 (BUD20_YEAST) Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)

Bud site selection protein 20 UniProtKBInterProSTRINGInteractive Modelling

Available Structures

16 Experimental Structures

1 SWISS-MODEL model

Alignments

Background

Resolution

Bud site selection protein 20 UniProtKB InterPro STRING Interactive Modelling