Q13838 | SWISS-MODEL Repository

Q13838 (DX39B_HUMAN) Homo sapiens (Human)

Spliceosome RNA helicase DDX39B UniProtKB InterPro STRING Interactive Modelling

428 aa; Sequence (Fasta) ; (Isoform 2); 51 identical sequences

It is possible new templates exist for this target since these models were created.

Available Structures

9 Experimental Structures

Description	PDB ID	Oligo-state	Range	Ligands
Crystal structure of UAP56 in complex with Tho1, the yeast homolog of human SARNP	8enk SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P40040;	44-424	2×ADP; 2×BEF; 2×MG;
Assess
Structure of an endogenous human TREX complex bound to mRNA	7znk SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer Q13769; Q6I9Y2; Q86V81; Q86W42; Q8NI27; Q96FV9; Q96J01;	52-425
Assess
Structure of the human TREX core THO-UAP56 complex	7znl SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer Q13769; Q6I9Y2; Q86W42; Q8NI27; Q96FV9; Q96J01;	256-425
Assess
Structure of the human THO - UAP56 complex	7apk SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer Q13769; Q6I9Y2; Q86W42; Q8NI27; Q96FV9; Q96J01;	256-425
Assess
Crystal structure of the N-terminal domain of human UAP56	1t6n SMTL PDBe PDBe-KB PDBj PDBsum RCSB	homo-2-mer	45-251	2×FLC;
Assess
structure of DECD to DEAD mutation of human UAP56	1xtk SMTL PDBe PDBe-KB PDBj PDBsum RCSB	monomer	46-427	1×BME;
Assess
Structure of Wildtype human UAP56	1xti SMTL PDBe PDBe-KB PDBj PDBsum RCSB	monomer	46-426	4×IPA;
Assess
structure of human UAP56 in complex with ADP	1xtj SMTL PDBe PDBe-KB PDBj PDBsum RCSB	monomer	45-423	1×MG; 1×ADP; 1×ACY;
Assess
Crystal structure of the C-terminal domain of UAP56	1t5i SMTL PDBe PDBe-KB PDBj PDBsum RCSB	monomer	261-428
Assess

6 SWISS-MODEL models

Template	Oligo-state	QMEANDisCo	Range	Ligands	Trg-Tpl Seq id (%)
8iju.1.A	monomer	0.86	45-420		93.01
Assess
5suq.1.C	monomer	0.79	45-424		66.03
Assess
4ct5.1.A	monomer	0.73	47-423		36.83
Assess
7ppz.1.B	monomer	0.69	44-416		37.13
Assess
5e7i.3.A	monomer	0.64	4-422		31.80
Assess
6o5f.1.A	monomer	0.63	4-423		31.80
Assess

Model ID	Oligo-state	Avg pLDDT	Range	Trg-Mdl Seq Id (%)

Model ID	Oligo-state	Avg Confidence	Range	Trg-Mdl Seq id (%)

7 SWISS-MODEL models built on isoform sequence

Template	Isoform	Oligo-state	QMEANDisCo	Range	Ligands	Trg-Tpl Seq id (%)
Isoform 2	8iju.1.A	monomer	0.84	45-435		92.75
Assess
Isoform 2	5suq.1.C	monomer	0.76	45-439		66.03
Assess
Isoform 2	4c9b.1.A	monomer	0.73	45-431		37.87
Assess
Isoform 2	4ct5.1.A	monomer	0.71	45-436		35.75
Assess
Isoform 2	4kbf.1.A	monomer	0.70	46-411		31.50
Assess
Isoform 2	4kbf.2.A	monomer	0.70	46-411		31.50
Assess
Isoform 2	2hxy.1.A	monomer	0.69	45-431		37.77
Assess

Alignments