Q72I32 (RPOA_THET2) Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)

DNA-directed RNA polymerase subunit alpha UniProtKBInterProSTRINGInteractive Modelling

315 aa; Sequence (Fasta) Identical sequences: Thermus thermophilus: Q5SHR6; Q9Z9H6; A0A510IKZ9

Sequence Features

Add
 26-222DNA-directed RNA polymerase, RpoA/D/Rpb3-type
IPR011263PF01193
 59-154DNA-directed RNA polymerase, insert domain
IPR011262PF01000
 246-308RNA polymerase, alpha subunit, C-terminal
IPR011260PF03118

Sequence Alignments

Experimental structures

DescriptionOligo-stateLigandsStructureRange
Crystal structure of T. thermophilus TTHB099 class II transcription activation complex: TAP-RPo Heteromer
Q53W63; Q5SHR6; Q5SKW1; Q8RQE7; Q8RQE8; Q8RQE9;
ZN;MG;5i2d4-310
Assess
Crystal structure of thermus thermophilus rna polymerase holoenzyme in complex with the antibiotic … Heteromer
Q5SHR6; Q5SKW1; Q8RQE7; Q8RQE8; Q8RQE9;
PO4;MG;MPD;ZN;NE6;3dxj1-243
Assess
Re-refinement of Thermus thermopiles DNA-directed RNA polymerase structure Heteromer
Q5SHR6; Q5SKW1; Q8RQE7; Q8RQE8; Q8RQE9;
PO4;MG;ZN;G4P;5tmc1-238
Assess
Re-refinement of thermus thermophilus RNA polymerase Heteromer
Q5SHR6; Q5SKW1; Q8RQE7; Q8RQE8; Q8RQE9;
PO4;NE6;ZN;MG;5tmf1-238
Assess
Crystal structure of Thermus thermophilus transcription initiation complex soaked with GE23077 Heteromer
Q5SHR6; Q5SKW1; Q8RQE7; Q8RQE8; Q8RQE9;
MG;ZN;MB8;4oin2-234
Assess
Thermus thermophilus initial transcription complex comprising sigma A and 5'-triphosphate RNA of 4 … Heteromer
Q5SHR6; Q5SKW1; Q8RQE7; Q8RQE8; Q8RQE9;
ZN;MG;6kql2-234
Assess
Thermus thermophilus RNA polymerase de novo transcription initiation complex Heteromer
Q5SKW1; Q8RQE7; Q8RQE8; Q8RQE9; Q9Z9H6;
ATP;ZN;MG;2TM;4q4z2-234
Assess
Crystal structure of Thermus thermophilus RNA polymerase transcription initiation complex soaked wi… Heteromer
Q5SHR6; Q5SKW1; Q8RQE7; Q8RQE8; Q8RQE9;
MG;RFV;ZN;MB8;4oir2-234
Assess
Thermus thermophilus initial transcription complex comprising sigma A and 5'-triphosphate RNA of 2 … Heteromer
Q5SHR6; Q5SKW1; Q8RQE7; Q8RQE8; Q8RQE9;
MG;ZN;6l742-234
Assess
Thermus thermophilus initial transcription complex comprising sigma A and 5'-OH RNA of 4 nt Heteromer
Q5SHR6; Q5SKW1; Q8RQE7; Q8RQE8; Q8RQE9;
MG;ZN;6kqe2-234
Assess
Crystal structure of Thermus thermophilus transcription initiation complex soaked with GE23077, ATP… Heteromer
Q5SHR6; Q5SKW1; Q8RQE7; Q8RQE8; Q8RQE9;
MG;ZN;ATP;MB8;4oip2-234
Assess
RNA polymerase-gp39 complex Heteromer
A7XX65; Q5SHR6; Q5SKW1; Q8RQE7; Q8RQE8; Q8RQE9;
ZN;3wod4-235
Assess
T. thermophilus RNA polymerase holoenzyme bound with gp39 and gp76 Heteromer
A7XX65; A7XXA7; Q5SHR6; Q5SKW1; Q8RQE7; Q8RQE8; Q8RQE9;
ZN;5xj04-235
Assess
Thermus thermophilus initial transcription complex comprising sigma A and 5'-OH RNA of 5 nt Heteromer
Q5SHR6; Q5SKW1; Q8RQE7; Q8RQE8; Q8RQE9;
MG;ZN;6kqf4-234
Assess
Thermus thermophilus initial transcription complex comprising sigma A and 5'-OH RNA of 6 nt Heteromer
Q5SHR6; Q5SKW1; Q8RQE7; Q8RQE8; Q8RQE9;
MG;ZN;6kqg4-234
Assess
Crystal structure of Thermus thermophilus product complex for transcription initiation with 3'-deph… Heteromer
Q5SHR6; Q5SKW1; Q8RQE7; Q8RQE8; Q8RQE9;
MG;ZN;C;DPO;COD;5d4e4-234
Assess
Thermus thermophilus initial transcription complex comprising sigma A and 5'-OH RNA of 7 nt Heteromer
Q5SHR6; Q5SKW1; Q8RQE7; Q8RQE8; Q8RQE9;
MG;ZN;6kqh4-234
Assess
Thermus thermophilus initial transcription complex comprising sigma A and 5'-triphosphate RNA of 5 … Heteromer
Q5SHR6; Q5SKW1; Q8RQE7; Q8RQE8; Q8RQE9;
MG;ZN;6kqm4-234
Assess
T. thermophilus transcription initiation complex having a RRR discriminator sequence and a nontempl… Heteromer
Q5SHR6; Q5SKW1; Q8RQE7; Q8RQE8; Q8RQE9;
MG;ZN;5e174-234
Assess
Crystal structure of Thermus thermophilus product complex for transcription initiation with ATP and… Heteromer
Q5SHR6; Q5SKW1; Q8RQE7; Q8RQE8; Q8RQE9;
MG;ZN;C;CTP;ATP;5d4c4-234
Assess
T. thermophilus transcription initiation complex having a YYY discriminator sequence and a nontempl… Heteromer
Q5SHR6; Q5SKW1; Q8RQE7; Q8RQE8; Q8RQE9;
MG;ZN;5e184-234
Assess
Crystal structure of Thermus thermophilus RNA polymerase holoenzyme in complex with GE23077 Heteromer
Q5SHR6; Q5SKW1; Q8RQE7; Q8RQE8; Q8RQE9;
ZN;MG;MB8;4mq96-236
Assess
Crystal structure of Thermus thermophilus transcription initiation complex with GpA and CMPcPP Heteromer
Q5SHR6; Q72ID6; Q72L95; Q8RQE8; Q8RQE9;
MG;ZN;2TM;5x224-234
Assess
Thermus thermophilus initial transcription complex comprising sigma A and 5'-triphosphate RNA of 6 … Heteromer
Q5SHR6; Q5SKW1; Q8RQE7; Q8RQE8; Q8RQE9;
MG;ZN;6kqn4-234
Assess
Crystal structure of Thermus thermophilus transcription initiation complex soaked with GE23077 and … Heteromer
Q5SHR6; Q5SKW1; Q8RQE7; Q8RQE8; Q8RQE9;
ZN;MG;MB8;4oiq4-234
Assess
Crystal structure of the T. Thermophilus RNA polymerase holoenzyme in complex with inhibitor tageti… Heteromer
Q5SHR6; Q5SKW1; Q8RQE7; Q8RQE8; Q8RQE9;
MG;ZN;TGT;2be51-229
Assess
Crystal structure of the T. thermophilus RNA polymerase holoenzyme in complex with antibiotic sterp… Heteromer
Q5SHR6; Q5SKW1; Q8RQE7; Q8RQE8; Q8RQE9;
STD;ZN;MG;2a6h1-229
Assess
Crystal structure of the T. thermophilus RNA polymerase holoenzyme in complex with antibiotic rifab… Heteromer
Q5SHR6; Q5SKW1; Q8RQE7; Q8RQE8; Q8RQE9;
313×MG;RBT;ZN;2a681-229
Assess
Crystal structure of the T. Thermophilus RNA polymerase holoenzyme in complex with antibiotic rifap… Heteromer
Q5SHR6; Q5SKW1; Q8RQE7; Q8RQE8; Q8RQE9;
266×MG;RPT;ZN;2a691-229
Assess
Crystal structure of the T. thermophilus RNA polymerase elongation complex Heteromer
Q5SHR6; Q8RQE7; Q8RQE8; Q8RQE9;
ZN;MG;2o5i1-229
Assess
Crystal structure of the RNA polymerase holoenzyme from Thermus thermophilus at 2.6A resolution Heteromer
Q5SHR6; Q5SKW1; Q8RQE7; Q8RQE8; Q8RQE9;
260×MG;PB;1iw71-229
Assess
Crystal structure of the T. Thermophilus RNA polymerase holoenzyme in complex with antibiotic myxop… Heteromer
Q5SKW1; Q8RQE7; Q8RQE8; Q8RQE9; Q9Z9H6;
ZN;MXP;MG;3eql1-229
Assess
Structural basis for transcription regulation by alarmone ppGpp Heteromer
Q5SHR6; Q5SKW1; Q8RQE7; Q8RQE8; Q8RQE9;
359×MG;ZN;1smy1-229
Assess
Crystal structure of the T. Thermophilus RNA polymerase holoenzyme Heteromer
Q5SHR6; Q5SKW1; Q8RQE7; Q8RQE8; Q8RQE9;
ZN;MG;2a6e1-229
Assess
Crystal structure of the T. thermophilus RNAP polymerase elongation complex with the ntp substrate … Heteromer
Q5SHR6; Q8RQE7; Q8RQE8; Q8RQE9;
STD;ZN;MG;APC;2ppb1-229
Assess
Structure of Thermus thermophilus RNA polymerase holoenzyme in complex with the antibiotic streptol… Heteromer
Q5SHR6; Q5SKW1; Q8RQE7; Q8RQE8; Q8RQE9;
STD;ZN;MG;1zyr1-229
Assess
Crystal structure of Thermus thermophilus product complex for transcription initiation with NAD and… Heteromer
Q5SHR6; Q5SKW1; Q8RQE7; Q8RQE8; Q8RQE9;
MG;ZN;C;CTP;NAD;5d4d4-232
Assess
Crystal structure of the T. thermophilus RNAP polymerase elongation complex with the NTP substrate … Heteromer
Q5SHR6; Q8RQE7; Q8RQE8; Q8RQE9;
ZN;MG;APC;2o5j1-229
Assess
Crystal structure of Thermus thermophilus RNA polymerase holoenzyme at 3.3 angstroms resolution Heteromer
Q5SHR6; Q5SKW1; Q8RQE7; Q8RQE8; Q8RQE9;
ZN;MG;2cw01-229
Assess
Thermus thermophilus RNA polymerase backtracked complex Heteromer
Q5SHR6; Q8RQE7; Q8RQE8; Q8RQE9;
ZN;4wqs1-229
Assess
Thermus thermophiles RNA polymerase in complex with promoter DNA and antibiotic Kanglemycin A Heteromer
Q72HM5; Q72HM6; Q72ID6; Q72L95;
KNG;ZN;MG;6cuu4-230
Assess
X-ray crystal structure of a bacterial reiterative transcription complex of pyrG promoter variant -… Heteromer
Q5SHR6; Q72L95; Q8RQE7; Q8RQE8; Q8RQE9;
MG;POP;ZN;6ow34-229
Assess
X-ray crystal structure of bacterial RNA polymerase and pyrG promoter complex Heteromer
Q5SKW1; Q8RQE7; Q8RQE8; Q8RQE9;
ZN;MG;5voi4-229
Assess
X-ray crystal structure of a bacterial reiterative transcription complex of pyrG promoter variant -… Heteromer
Q5SHR6; Q5SKW1; Q8RQE7; Q8RQE8; Q8RQE9;
MG;POP;ZN;6ovr4-229
Assess
Crystal structure of Thermus thermophilus transcription initiation complex Heteromer
Q5SHR6; Q5SKW1; Q8RQE7; Q8RQE8; Q8RQE9;
MG;ZN;4g7h4-229
Assess
X-ray crystal structure of a bacterial reiterative transcription complex of pyrBI promoter Heteromer
Q5SHR6; Q72L95; Q8RQE7; Q8RQE8; Q8RQE9;
MG;ZN;UTP;6p714-229
Assess
Crystal structure of Thermus thermophilus transcription initiation complex containing 2 nt of RNA Heteromer
Q5SHR6; Q5SKW1; Q8RQE7; Q8RQE8; Q8RQE9;
ZN;MG;4g7o4-229
Assess
X-ray crystal structure of a bacterial reiterative transcription complex of pyrG promoter variant -… Heteromer
Q5SHR6; Q72L95; Q8RQE7; Q8RQE8; Q8RQE9;
POP;MG;ZN;6ovy4-229
Assess
Thermus thermophilus RNA polymerase initially transcribing complex containing 6-mer RNA Heteromer
Q5SKW1; Q8RQE7; Q8RQE8; Q8RQE9; Q9Z9H6;
MG;ZN;ATP;4q5s4-229
Assess
Thermus thermophilus RNA polymerase initially transcribing complex with 3'dCTP Heteromer
Q5SHR6; Q5SKW1; Q8RQE7; Q8RQE8; Q8RQE9;
MG;ZN;CH1;6woy4-229
Assess
X-ray crystal structure of a bacterial reiterative transcription complex of pyrG promoter at 7 min Heteromer
Q5SHR6; Q72L95; Q8RQE7; Q8RQE8; Q8RQE9;
MG;POP;ZN;6oy74-229
Assess
X-ray crystal structure of bacterial RNA polymerase and pyrBI promoter complex Heteromer
Q5SHR6; Q72L95; Q8RQE7; Q8RQE8; Q8RQE9;
MG;ZN;6p704-229
Assess
X-ray crystal structure of a bacterial reiterative transcription complex of pyrG promoter at 5 min Heteromer
Q5SHR6; Q72L95; Q8RQE7; Q8RQE8; Q8RQE9;
MG;ZN;GTP;6oy64-229
Assess
Crystal structure of Thermus thermophilus pre-insertion substrate complex for de novo transcription… Heteromer
Q5SHR6; Q5SKW1; Q8RQE7; Q8RQE8; Q8RQE9;
ZN;MG;ATP;2TM;4oio4-229
Assess
X-ray crystal structure of a bacterial reiterative transcription complex of pyrG promoter at 3 min Heteromer
A0A1J1EUF1; Q72L95; Q8RQE8; Q8RQE9; Q9Z9H6;
MG;ZN;GTP;6oy54-229
Assess
Thermus thermophilus RNA polymerase initially transcribing complex with 2'dCTP Heteromer
Q5SHR6; Q5SKW1; Q8RQE7; Q8RQE8; Q8RQE9;
NA;DCP;MG;ZN;6wox4-229
Assess
Thermus thermophilus initial transcription complex comprising sigma A and 5'-OH RNA of 3 nt Heteromer
Q5SHR6; Q5SKW1; Q8RQE7; Q8RQE8; Q8RQE9;
MG;ZN;DG;6kqd4-229
Assess
X-ray crystal structure of a bacterial reiterative transcription complex of pyrG promoter Heteromer
Q5SHR6; Q5SKW1; Q8RQE7; Q8RQE8; Q8RQE9;
MG;POP;ZN;5vo84-229
Assess
Crystal structure of Thermus thermophilus transcription initiation complex with GpA and pseudouridi… Heteromer
Q5SHR6; Q72ID6; Q72L95; Q8RQE8; Q8RQE9;
MG;ZN;PUM;5x214-229
Assess
Crystal structure of Thermus thermophilus transcription initiation complex comprising a truncated s… Heteromer
Q5SHR6; Q5SKW1; Q8RQE7; Q8RQE8; Q8RQE9;
MG;ZN;6lts4-229
Assess
Crystal structure of Thermus thermophilus RNA polymerase core enzyme Heteromer
Q5SHR6; Q8RQE7; Q8RQE8; Q8RQE9;
ZN;MG;6asg4-229
Assess
Crystal structure of Thermus thermophilus transcription initiation complex containing 5-BrU at temp… Heteromer
Q5SHR6; Q5SKW1; Q8RQE7; Q8RQE8; Q8RQE9;
ZN;MG;4g7z4-229
Assess
Cryo-EM structure of Thermus thermophilus Mfd in complex with RNA polymerase Heteromer
Q5SHR6; Q72KB4; Q8RQE7; Q8RQE8; Q8RQE9;
ZN;MG;6m6a4-229
Assess
CryoEM structure of Thermus thermophilus RNA polymerase elongation complex Heteromer
Q5SHR6; Q8RQE7; Q8RQE8; Q8RQE9;
ZN;MG;6m6c4-229
Assess
Cryo-EM structure of Thermus thermophilus Mfd in complex with RNA polymerase and ATP-gamma-S Heteromer
Q5SHR6; Q72KB4; Q8RQE7; Q8RQE8; Q8RQE9;
ZN;MG;AGS;6m6b4-229
Assess
Thermus thermophilus RNA polymerase complexed with an RNA cleavage stimulating factor (a GreA/Gfh1 … Heteromer
Q5SHR6; Q5SJG6; Q5SKM1; Q8RQE7; Q8RQE8; Q8RQE9;
ZN;MG;4wqt6-229
Assess
Crystal structures of bacterial RNA Polymerase paused elongation complexes Heteromer
Q5SHR6; Q8RQE7; Q8RQE8; Q8RQE9;
ZN;MG;4gzy7-229
Assess
RNA polymerase-Gfh1 complex (Crystal type 1) Heteromer
Q5SHR6; Q5SJG6; Q8RQE7; Q8RQE8; Q8RQE9;
ZN;MG;3aoh7-229
Assess
Crystal structures of bacterial RNA Polymerase paused elongation complexes Heteromer
Q5SHR6; Q8RQE7; Q8RQE8; Q8RQE9;
ZN;MG;4gzz7-229
Assess
RNA polymerase-Gfh1 complex (Crystal type 2) Heteromer
Q5SHR6; Q5SJG6; Q8RQE7; Q8RQE8; Q8RQE9;
ZN;MG;3aoi7-229
Assess
THE C-TERMINAL DOMAIN OF THE RNA POLYMERASE ALPHA SUBUNIT FROM THERMUS THERMOPHILUSmonomer 1doq247-315
Assess