Q72I32 (RPOA_THET2) Thermus thermophilus (strain ATCC BAA-163 / DSM 7039 / HB27)

DNA-directed RNA polymerase subunit alpha UniProtKBInterProSTRINGInteractive Modelling

315 aa; Sequence (Fasta) ; 3 identical sequences: Thermus thermophilus: Q5SHR6, Q9Z9H6, A0A7R7TER8

Available Structures

78 Experimental Structures

DescriptionPDB IDOligo-stateRangeLigands
Crystal structure of T. thermophilus TTHB099 class II transcription activation complex: TAP-RPo Heteromer
Q53W63; Q5SHR6; Q5SKW1; Q8RQE7; Q8RQE8; Q8RQE9;
4-310
ZN;MG;
Assess
Crystal structure of thermus thermophilus rna polymerase holoenzyme in complex with the antibiotic … Heteromer
Q5SHR6; Q5SKW1; Q8RQE7; Q8RQE8; Q8RQE9;
1-243
PO4;MG;MPD;ZN;NE6;
Assess
Re-refinement of Thermus thermopiles DNA-directed RNA polymerase structure Heteromer
Q5SHR6; Q5SKW1; Q8RQE7; Q8RQE8; Q8RQE9;
1-238
PO4;MG;ZN;G4P;
Assess
Re-refinement of thermus thermophilus RNA polymerase Heteromer
Q5SHR6; Q5SKW1; Q8RQE7; Q8RQE8; Q8RQE9;
1-238
PO4;NE6;ZN;MG;
Assess
Crystal structure of Thermus thermophilus transcription initiation complex soaked with GE23077 Heteromer
Q5SHR6; Q5SKW1; Q8RQE7; Q8RQE8; Q8RQE9;
2-234
MG;ZN;MB8;
Assess
Thermus thermophilus initial transcription complex comprising sigma A and 5'-triphosphate RNA of 4 … Heteromer
Q5SHR6; Q5SKW1; Q8RQE7; Q8RQE8; Q8RQE9;
2-234
ZN;MG;
Assess
Thermus thermophilus transcription initiation complex containing a template-strand purine at positi… Heteromer
Q5SHR6; Q5SKW1; Q8RQE7; Q8RQE8; Q8RQE9;
2-234
MG;BU1;ZN;2TM;
Assess
Thermus thermophilus RNA polymerase de novo transcription initiation complex Heteromer
Q5SKW1; Q8RQE7; Q8RQE8; Q8RQE9; Q9Z9H6;
2-234
ATP;ZN;MG;2TM;
Assess
Crystal structure of Thermus thermophilus RNA polymerase transcription initiation complex soaked wi… Heteromer
Q5SHR6; Q5SKW1; Q8RQE7; Q8RQE8; Q8RQE9;
2-234
MG;RFV;ZN;MB8;
Assess
Thermus thermophilus initial transcription complex comprising sigma A and 5'-triphosphate RNA of 2 … Heteromer
Q5SHR6; Q5SKW1; Q8RQE7; Q8RQE8; Q8RQE9;
2-234
MG;ZN;
Assess
Thermus thermophilus initial transcription complex comprising sigma A and 5'-OH RNA of 4 nt Heteromer
Q5SHR6; Q5SKW1; Q8RQE7; Q8RQE8; Q8RQE9;
2-234
MG;ZN;
Assess
Crystal structure of Thermus thermophilus transcription initiation complex soaked with GE23077, ATP… Heteromer
Q5SHR6; Q5SKW1; Q8RQE7; Q8RQE8; Q8RQE9;
2-234
MG;ZN;ATP;MB8;
Assess
RNA polymerase-gp39 complex Heteromer
A7XX65; Q5SHR6; Q5SKW1; Q8RQE7; Q8RQE8; Q8RQE9;
4-235
ZN;
Assess
T. thermophilus RNA polymerase holoenzyme bound with gp39 and gp76 Heteromer
A7XX65; A7XXA7; Q5SHR6; Q5SKW1; Q8RQE7; Q8RQE8; Q8RQE9;
4-235
ZN;
Assess
Thermus thermophilus initial transcription complex comprising sigma A and 5'-OH RNA of 5 nt Heteromer
Q5SHR6; Q5SKW1; Q8RQE7; Q8RQE8; Q8RQE9;
4-234
MG;ZN;
Assess
Thermus thermophilus initial transcription complex comprising sigma A and 5'-OH RNA of 6 nt Heteromer
Q5SHR6; Q5SKW1; Q8RQE7; Q8RQE8; Q8RQE9;
4-234
MG;ZN;
Assess
Thermus thermophilus RNA polymerase transcription initiation complex containing a template-strand p… Heteromer
Q5SHR6; Q5SKW1; Q8RQE7; Q8RQE8; Q8RQE9;
4-234
MG;ZN;2TM;
Assess
Crystal structure of Thermus thermophilus product complex for transcription initiation with 3'-deph… Heteromer
Q5SHR6; Q5SKW1; Q8RQE7; Q8RQE8; Q8RQE9;
4-234
MG;ZN;C;DPO;COD;
Assess
Thermus thermophilus initial transcription complex comprising sigma A and 5'-OH RNA of 7 nt Heteromer
Q5SHR6; Q5SKW1; Q8RQE7; Q8RQE8; Q8RQE9;
4-234
MG;ZN;
Assess
Thermus thermophilus initial transcription complex comprising sigma A and 5'-triphosphate RNA of 5 … Heteromer
Q5SHR6; Q5SKW1; Q8RQE7; Q8RQE8; Q8RQE9;
4-234
MG;ZN;
Assess
T. thermophilus transcription initiation complex having a RRR discriminator sequence and a nontempl… Heteromer
Q5SHR6; Q5SKW1; Q8RQE7; Q8RQE8; Q8RQE9;
4-234
MG;ZN;
Assess
Crystal structure of Thermus thermophilus product complex for transcription initiation with ATP and… Heteromer
Q5SHR6; Q5SKW1; Q8RQE7; Q8RQE8; Q8RQE9;
4-234
MG;ZN;C;CTP;ATP;
Assess
T. thermophilus transcription initiation complex having a YYY discriminator sequence and a nontempl… Heteromer
Q5SHR6; Q5SKW1; Q8RQE7; Q8RQE8; Q8RQE9;
4-234
MG;ZN;
Assess
Crystal structure of Thermus thermophilus RNA polymerase holoenzyme in complex with GE23077 Heteromer
Q5SHR6; Q5SKW1; Q8RQE7; Q8RQE8; Q8RQE9;
6-236
ZN;MG;MB8;
Assess
Crystal structure of Thermus thermophilus transcription initiation complex with GpA and CMPcPP Heteromer
Q5SHR6; Q72ID6; Q72L95; Q8RQE8; Q8RQE9;
4-234
MG;ZN;2TM;
Assess
Thermus thermophilus initial transcription complex comprising sigma A and 5'-triphosphate RNA of 6 … Heteromer
Q5SHR6; Q5SKW1; Q8RQE7; Q8RQE8; Q8RQE9;
4-234
MG;ZN;
Assess
Crystal structure of Thermus thermophilus transcription initiation complex soaked with GE23077 and … Heteromer
Q5SHR6; Q5SKW1; Q8RQE7; Q8RQE8; Q8RQE9;
4-234
ZN;MG;MB8;
Assess
Crystal structure of the T. thermophilus RNA polymerase holoenzyme in complex with antibiotic sterp… Heteromer
Q5SHR6; Q5SKW1; Q8RQE7; Q8RQE8; Q8RQE9;
1-229
STD;ZN;MG;
Assess
Crystal structure of the T. Thermophilus RNA polymerase holoenzyme in complex with inhibitor tageti… Heteromer
Q5SHR6; Q5SKW1; Q8RQE7; Q8RQE8; Q8RQE9;
1-229
MG;ZN;TGT;
Assess
Crystal structure of the T. Thermophilus RNA polymerase holoenzyme in complex with antibiotic rifap… Heteromer
Q5SHR6; Q5SKW1; Q8RQE7; Q8RQE8; Q8RQE9;
1-229
266×MG;RPT;ZN;
Assess
Crystal structure of the T. thermophilus RNA polymerase elongation complex Heteromer
Q5SHR6; Q8RQE7; Q8RQE8; Q8RQE9;
1-229
ZN;MG;
Assess
Crystal structure of the T. thermophilus RNA polymerase holoenzyme in complex with antibiotic rifab… Heteromer
Q5SHR6; Q5SKW1; Q8RQE7; Q8RQE8; Q8RQE9;
1-229
313×MG;RBT;ZN;
Assess
Crystal structure of the RNA polymerase holoenzyme from Thermus thermophilus at 2.6A resolution Heteromer
Q5SHR6; Q5SKW1; Q8RQE7; Q8RQE8; Q8RQE9;
1-229
260×MG;PB;
Assess
Structural basis for transcription regulation by alarmone ppGpp Heteromer
Q5SHR6; Q5SKW1; Q8RQE7; Q8RQE8; Q8RQE9;
1-229
359×MG;ZN;
Assess
Crystal structure of the T. Thermophilus RNA polymerase holoenzyme in complex with antibiotic myxop… Heteromer
Q5SKW1; Q8RQE7; Q8RQE8; Q8RQE9; Q9Z9H6;
1-229
ZN;MXP;MG;
Assess
Crystal structure of the T. Thermophilus RNA polymerase holoenzyme Heteromer
Q5SHR6; Q5SKW1; Q8RQE7; Q8RQE8; Q8RQE9;
1-229
ZN;MG;
Assess
Crystal structure of the T. thermophilus RNAP polymerase elongation complex with the ntp substrate … Heteromer
Q5SHR6; Q8RQE7; Q8RQE8; Q8RQE9;
1-229
STD;ZN;MG;APC;
Assess
Crystal structure of the T. thermophilus RNAP polymerase elongation complex with the NTP substrate … Heteromer
Q5SHR6; Q8RQE7; Q8RQE8; Q8RQE9;
1-229
ZN;MG;APC;
Assess
Structure of Thermus thermophilus RNA polymerase holoenzyme in complex with the antibiotic streptol… Heteromer
Q5SHR6; Q5SKW1; Q8RQE7; Q8RQE8; Q8RQE9;
1-229
STD;ZN;MG;
Assess
Crystal structure of Thermus thermophilus product complex for transcription initiation with NAD and… Heteromer
Q5SHR6; Q5SKW1; Q8RQE7; Q8RQE8; Q8RQE9;
4-232
MG;ZN;C;CTP;NAD;
Assess
Crystal structure of Thermus thermophilus RNA polymerase holoenzyme at 3.3 angstroms resolution Heteromer
Q5SHR6; Q5SKW1; Q8RQE7; Q8RQE8; Q8RQE9;
1-229
ZN;MG;
Assess
Thermus thermophilus transcription initiation complex containing a template-strand pyrimidine at po… Heteromer
Q5SHR6; Q5SKW1; Q8RQE7; Q8RQE8; Q8RQE9;
4-232
ZN;MG;
Assess
Thermus thermophilus RNA polymerase backtracked complex Heteromer
Q5SHR6; Q8RQE7; Q8RQE8; Q8RQE9;
1-229
ZN;
Assess
Thermus thermophiles RNA polymerase in complex with promoter DNA and antibiotic Kanglemycin A Heteromer
Q72HM5; Q72HM6; Q72ID6; Q72L95;
4-230
KNG;ZN;MG;
Assess
X-ray crystal structure of a bacterial reiterative transcription complex of pyrG promoter variant -… Heteromer
Q5SHR6; Q72L95; Q8RQE7; Q8RQE8; Q8RQE9;
4-229
MG;POP;ZN;
Assess
X-ray crystal structure of bacterial RNA polymerase and pyrG promoter complex Heteromer
Q5SKW1; Q8RQE7; Q8RQE8; Q8RQE9;
4-229
ZN;MG;
Assess
X-ray crystal structure of a bacterial reiterative transcription complex of pyrG promoter variant -… Heteromer
Q5SHR6; Q5SKW1; Q8RQE7; Q8RQE8; Q8RQE9;
4-229
MG;POP;ZN;
Assess
Crystal structure of Thermus thermophilus transcription initiation complex Heteromer
Q5SHR6; Q5SKW1; Q8RQE7; Q8RQE8; Q8RQE9;
4-229
MG;ZN;
Assess
X-ray crystal structure of a bacterial reiterative transcription complex of pyrBI promoter Heteromer
Q5SHR6; Q72L95; Q8RQE7; Q8RQE8; Q8RQE9;
4-229
MG;ZN;UTP;
Assess
Crystal structure of Thermus thermophilus transcription initiation complex containing 2 nt of RNA Heteromer
Q5SHR6; Q5SKW1; Q8RQE7; Q8RQE8; Q8RQE9;
4-229
ZN;MG;
Assess
X-ray crystal structure of a bacterial reiterative transcription complex of pyrG promoter variant -… Heteromer
Q5SHR6; Q72L95; Q8RQE7; Q8RQE8; Q8RQE9;
4-229
POP;MG;ZN;
Assess
Thermus thermophilus RNA polymerase initially transcribing complex with 3'dCTP Heteromer
Q5SHR6; Q5SKW1; Q8RQE7; Q8RQE8; Q8RQE9;
4-229
MG;ZN;CH1;
Assess
Thermus thermophilus RNA polymerase initially transcribing complex containing 6-mer RNA Heteromer
Q5SKW1; Q8RQE7; Q8RQE8; Q8RQE9; Q9Z9H6;
4-229
MG;ZN;ATP;
Assess
X-ray crystal structure of a bacterial reiterative transcription complex of pyrG promoter at 7 min Heteromer
Q5SHR6; Q72L95; Q8RQE7; Q8RQE8; Q8RQE9;
4-229
MG;POP;ZN;
Assess
X-ray crystal structure of bacterial RNA polymerase and pyrBI promoter complex Heteromer
Q5SHR6; Q72L95; Q8RQE7; Q8RQE8; Q8RQE9;
4-229
MG;ZN;
Assess
X-ray crystal structure of a bacterial reiterative transcription complex of pyrG promoter at 5 min Heteromer
Q5SHR6; Q72L95; Q8RQE7; Q8RQE8; Q8RQE9;
4-229
MG;ZN;GTP;
Assess
X-ray crystal structure of a bacterial reiterative transcription complex of pyrG promoter at 3 min Heteromer
A0A1J1EUF1; Q72L95; Q8RQE8; Q8RQE9; Q9Z9H6;
4-229
MG;ZN;GTP;
Assess
Crystal structure of Thermus thermophilus pre-insertion substrate complex for de novo transcription… Heteromer
Q5SHR6; Q5SKW1; Q8RQE7; Q8RQE8; Q8RQE9;
4-229
ZN;MG;ATP;2TM;
Assess
Thermus thermophilus RNA polymerase initially transcribing complex with 2'dCTP Heteromer
Q5SHR6; Q5SKW1; Q8RQE7; Q8RQE8; Q8RQE9;
4-229
NA;DCP;MG;ZN;
Assess
X-ray crystal structure of a bacterial reiterative transcription complex of pyrG promoter Heteromer
Q5SHR6; Q5SKW1; Q8RQE7; Q8RQE8; Q8RQE9;
4-229
MG;POP;ZN;
Assess
Thermus thermophilus initial transcription complex comprising sigma A and 5'-OH RNA of 3 nt Heteromer
Q5SHR6; Q5SKW1; Q8RQE7; Q8RQE8; Q8RQE9;
4-229
MG;ZN;DG;
Assess
Crystal structure of Thermus thermophilus transcription initiation complex with GpA and pseudouridi… Heteromer
Q5SHR6; Q72ID6; Q72L95; Q8RQE8; Q8RQE9;
4-229
MG;ZN;PUM;
Assess
Crystal structure of Thermus thermophilus transcription initiation complex comprising a truncated s… Heteromer
Q5SHR6; Q5SKW1; Q8RQE7; Q8RQE8; Q8RQE9;
4-229
MG;ZN;
Assess
Crystal structure of Thermus thermophilus transcription initiation complex with 5nt RNA Heteromer
Q5SHR6; Q5SKW1; Q8RQE7; Q8RQE8; Q8RQE9;
4-229
MG;ZN;
Assess
Crystal structure of Thermus thermophilus reiterative transcription complex with 5nt oligo-C RNA Heteromer
Q5SHR6; Q5SKW1; Q8RQE7; Q8RQE8; Q8RQE9;
4-229
MG;ZN;
Assess
Crystal structure of Thermus thermophilus reiterative transcription complex with 4nt oligo-G RNA Heteromer
Q5SHR6; Q5SKW1; Q8RQE7; Q8RQE8; Q8RQE9;
4-229
MG;ZN;
Assess
Crystal structure of Thermus thermophilus RNA polymerase core enzyme Heteromer
Q5SHR6; Q8RQE7; Q8RQE8; Q8RQE9;
4-229
ZN;MG;
Assess
Crystal structure of Thermus thermophilus transcription initiation complex containing 5-BrU at temp… Heteromer
Q5SHR6; Q5SKW1; Q8RQE7; Q8RQE8; Q8RQE9;
4-229
ZN;MG;
Assess
CryoEM structure of Thermus thermophilus RNA polymerase elongation complex Heteromer
Q5SHR6; Q8RQE7; Q8RQE8; Q8RQE9;
4-229
ZN;MG;
Assess
Cryo-EM structure of Thermus thermophilus reiterative transcription complex with 11nt oligo-G RNA Heteromer
Q5SHR6; Q5SKW1; Q8RQE7; Q8RQE8; Q8RQE9;
4-229
MG;ZN;
Assess
Cryo-EM structure of Thermus thermophilus Mfd in complex with RNA polymerase Heteromer
Q5SHR6; Q72KB4; Q8RQE7; Q8RQE8; Q8RQE9;
4-229
ZN;MG;
Assess
Cryo-EM structure of Thermus thermophilus Mfd in complex with RNA polymerase and ATP-gamma-S Heteromer
Q5SHR6; Q72KB4; Q8RQE7; Q8RQE8; Q8RQE9;
4-229
ZN;MG;AGS;
Assess
Thermus thermophilus RNA polymerase complexed with an RNA cleavage stimulating factor (a GreA/Gfh1 … Heteromer
Q5SHR6; Q5SJG6; Q5SKM1; Q8RQE7; Q8RQE8; Q8RQE9;
6-229
ZN;MG;
Assess
Crystal structures of bacterial RNA Polymerase paused elongation complexes Heteromer
Q5SHR6; Q8RQE7; Q8RQE8; Q8RQE9;
7-229
ZN;MG;
Assess
RNA polymerase-Gfh1 complex (Crystal type 1) Heteromer
Q5SHR6; Q5SJG6; Q8RQE7; Q8RQE8; Q8RQE9;
7-229
ZN;MG;
Assess
Crystal structures of bacterial RNA Polymerase paused elongation complexes Heteromer
Q5SHR6; Q8RQE7; Q8RQE8; Q8RQE9;
7-229
ZN;MG;
Assess
RNA polymerase-Gfh1 complex (Crystal type 2) Heteromer
Q5SHR6; Q5SJG6; Q8RQE7; Q8RQE8; Q8RQE9;
7-229
ZN;MG;
Assess
THE C-TERMINAL DOMAIN OF THE RNA POLYMERASE ALPHA SUBUNIT FROM THERMUS THERMOPHILUSmonomer247-315
Assess

3 SWISS-MODEL models

TemplateOligo-stateQMEANDisCoRangeLigandsTrg-Tpl Seq id (%)
4g7h.1.Amonomer0.844-229
100.00
Assess
6n4c.1.Emonomer0.566-313
43.52
Assess
6n4c.1.Dmonomer0.516-313
43.19
Assess