Q73368 (POL_HV1B9) Human immunodeficiency virus type 1 group M subtype B (strain 896)(HIV-1)

Gag-Pol polyprotein UniProtKBInterProInteractive Modelling

1435 aa; Sequence (Fasta)

Molecule Processing
Matrix protein p17
Capsid protein p24
Nucleocapsid protein p7
p6-pol
Protease
Reverse transcriptase/ribonuclease H
p51 RT
p15
Integrase

Sequence Features

Add
 513For protease activity; shared with dimeric partner
 697Magnesium; catalytic; for reverse transcriptase activity
 772Magnesium; catalytic; for reverse transcriptase activity
 773Magnesium; catalytic; for reverse transcriptase activity
 1030Magnesium; catalytic; for RNase H activity
 1065Magnesium; catalytic; for RNase H activity
 1085Magnesium; catalytic; for RNase H activity
 1136Magnesium; catalytic; for RNase H activity
 1211Magnesium; catalytic; for integrase activity
 1263Magnesium; catalytic; for integrase activity
 1299Magnesium; catalytic; for integrase activity
 988Essential for RT p66/p51 heterodimerization
 1001Essential for RT p66/p51 heterodimerization
 390-407CCHC-type 1
 411-428CCHC-type 2
 1150-1191Integrase-type
 1370-1417Integrase-type
 132-133Cleavage; by viral protease
 221-222Cis/trans isomerization of proline peptide bond; by human PPIA/CYPA
 363-364Cleavage; by viral protease
 377-378Cleavage; by viral protease
 432-433Cleavage; by viral protease
 440-441Cleavage; by viral protease
 488-489Cleavage; by viral protease
 587-588Cleavage; by viral protease
 1027-1028Cleavage; by viral protease; partial
 1147-1148Cleavage; by viral protease
 2-132Immunodeficiency lentiviral matrix, N-terminal
IPR000071PF00540
 149-349Retroviral nucleocapsid protein Gag, p24 fragment
IPR000721PF00607
 391-406Zinc finger, CCHC-type
IPR001878PF00098
 412-428Zinc finger, CCHC-type
IPR001878PF00098
 494-585Retropepsins
IPR018061PF00077
 650-819Reverse transcriptase domain
IPR000477PF00078
 829-890Reverse transcriptase thumb
IPR010661PF06817
 905-1006Reverse transcriptase connection
IPR010659PF06815
 1025-1143Ribonuclease H domain
IPR002156PF00075
 1155-1191Integrase, N-terminal zinc-binding domain
IPR003308PF02022
 1205-1292Integrase, catalytic core
IPR001584PF00665
 1372-1415Integrase, C-terminal, retroviral
IPR001037PF00552

Sequence Alignments

Capsid protein p24 133-363; PRO_0000250974

Oligo-stateLigandsQMEANTemplateRangeSeq id (%)
monomer -0.204xfy.1.B133-352
97.40
Assess
monomer -0.742m8n.1.A133-353
97.40
Assess
monomer -0.582m8l.1.B133-353
97.40
Assess

Reverse transcriptase/ribonuclease H 588-1147; PRO_0000250980

Oligo-stateLigandsQMEANTemplateRangeSeq id (%)
monomer 0.934zhr.1.A588-1140
96.79
Assess
monomer -2.602jle.1.B590-1016
96.29
Assess

p51 RT 588-1027; PRO_0000250981

Oligo-stateLigandsQMEANTemplateRangeSeq id (%)
monomer -2.602jle.1.B590-1016
96.29
Assess

Integrase 1148-1435; PRO_0000250983

Oligo-stateLigandsQMEANTemplateRangeSeq id (%)
monomer ZN;-1.126rwl.1.B1148-1419
76.04
Assess
monomer ZN;-0.246rwl.1.A1148-1416
76.04
Assess
monomer ZN;-0.695u1c.1.A1148-1416
95.92
Assess
monomer -1.035u1c.1.B1203-1416
95.92
Assess