Q74120 (POL_HV2KR) Human immunodeficiency virus type 2 subtype A (isolate KR) (HIV-2)

Gag-Pol polyprotein UniProtKBInterProInteractive Modelling

1463 aa; Sequence (Fasta)

Sequence Features

 537For protease activity; shared with dimeric partner
 721Magnesium; catalytic; for reverse transcriptase activity
 796Magnesium; catalytic; for reverse transcriptase activity
 797Magnesium; catalytic; for reverse transcriptase activity
 1053Magnesium; catalytic; for RNase H activity
 1088Magnesium; catalytic; for RNase H activity
 1108Magnesium; catalytic; for RNase H activity
 1159Magnesium; catalytic; for RNase H activity
 1234Magnesium; catalytic; for integrase activity
 1286Magnesium; catalytic; for integrase activity
 1322Magnesium; catalytic; for integrase activity
 1011Essential for RT p66/p51 heterodimerization
 1024Essential for RT p66/p51 heterodimerization
 389-406CCHC-type 1
 410-427CCHC-type 2
 1173-1214Integrase-type
 1393-1440Integrase-type
 135-136Cleavage; by viral protease
 222-223Cis/trans isomerization of proline peptide bond; by human PPIA/CYPA
 365-366Cleavage; by viral protease
 382-383Cleavage; by viral protease
 431-432Cleavage; by viral protease
 445-446Cleavage; by viral protease
 512-513Cleavage; by viral protease
 611-612Cleavage; by viral protease
 1050-1051Cleavage; by viral protease; partial
 1170-1171Cleavage; by viral protease
 2-144Immunodeficiency lentiviral matrix, N-terminal
IPR000071PF00540
 151-365Retroviral nucleocapsid protein Gag
IPR000721PF00607
 389-405Zinc finger, CCHC-type
IPR001878PF00098
 411-427Zinc finger, CCHC-type
IPR001878PF00098
 518-609Retropepsins
IPR018061PF00077
 674-844Reverse transcriptase domain
IPR000477PF00078
 853-915Reverse transcriptase thumb
IPR010661PF06817
 929-1029Reverse transcriptase connection
IPR010659PF06815
 1048-1166Ribonuclease H domain
IPR002156PF00075
 1178-1215Integrase, N-terminal zinc-binding domain
IPR003308PF02022
 1228-1331Integrase, catalytic core
IPR001584PF00665
 1391-1438Integrase, C-terminal, retroviral
IPR001037PF00552

Sequence Alignments

Homology models

Oligo-stateLigandsQMEANTemplateRangeSeq id (%)ReportDownloadAssess
monomer ZN;MG;-0.903f9k.1.A1174-1377
96.15
monomer -0.981mu2.1.B617-1042
94.13
monomer -2.483drr.1.A612-1167
61.18
monomer ZN;-1.795u1c.1.A1171-1439
56.15
monomer -0.162m8l.1.B136-355
69.00
monomer -0.764xfy.1.B136-354
69.00
monomer CPS;-3.941ex4.1.A1226-1440
58.52
monomer -2.075u1c.1.B1226-1439
56.15
monomer -3.771l6n.1.A2-285
58.48