Q8ND04 | SWISS-MODEL Repository

Q8ND04 (SMG8_HUMAN) Homo sapiens (Human)

Nonsense-mediated mRNA decay factor SMG8 UniProtKB InterPro STRING Interactive Modelling

991 aa; Sequence (Fasta) ; (Isoform 2; Isoform 3)

It is possible new templates exist for this target since these models were created.

Available Structures

6 Experimental Structures

Description	PDB ID	Oligo-state	Range	Ligands
Human SMG1-8-9 kinase complex with AlphaFold predicted SMG8 C-terminus, bound to a SMG1 inhibitor	7pw5 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer Q96Q15; Q9H0W8;	4-991	1×IHP; 1×88C; 1×ATP; 1×MG;
Assess
Structure of SMG189	6l54 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer Q96Q15; Q9H0W8;	1-559	1×GTP; 1×MG;
Assess
Human SMG1-8-9 kinase complex bound to a SMG1 inhibitor	7pw4 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer Q96Q15; Q9H0W8;	4-559	1×IHP; 1×88C; 1×ATP; 1×MG;
Assess
Structure of the SMG1-SMG8-SMG9 complex	6syt SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer Q96Q15; Q9H0W8;	4-559	1×IHP; 1×ATP; 1×MG;
Assess
Human SMG1-8-9 kinase complex bound to AMPPNP	7pw8 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer Q96Q15; Q9H0W8;	4-559	1×IHP; 1×ANP; 1×ATP; 1×MG;
Assess
Structure of SMG1-8-9 kinase complex bound to UPF1-LSQ	6z3r SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer Q92900; Q96Q15; Q9H0W8;	4-559	1×ANP; 1×IHP; 1×ATP; 1×MG;
Assess

1 SWISS-MODEL model

Template	Oligo-state	QMEANDisCo	Range	Ligands	Trg-Tpl Seq id (%)
6l54.1.B	monomer	0.59	1-559		100.00
Assess

Model ID	Oligo-state	Avg pLDDT	Range	Trg-Mdl Seq Id (%)

Model ID	Oligo-state	Avg Confidence	Range	Trg-Mdl Seq id (%)

1 SWISS-MODEL model built on isoform sequence

Template	Isoform	Oligo-state	QMEANDisCo	Range	Ligands	Trg-Tpl Seq id (%)
Isoform 3	6l54.1.B	monomer	0.64	1-559		100.00
Assess

Alignments