Q8PWY1 (PYLS_METMA) Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM11833 / OCM 88) (Methanosarcina frisia)
Pyrrolysine--tRNA ligase UniProtKBInterProInteractive Modelling
454 aa; Sequence (Fasta) ;
6 identical sequences: Methanosarcina mazei: A0A0F8GPG2; Methanosarcina mazei S-6: A0A0E3WPC9; Methanosarcina mazei WWM610: A0A0E3PZI8; Methanosarcina mazei SarPi: A0A0E3LT83; Methanosarcina mazei LYC: A0A0E3RUJ0; Methanosarcina mazei C16: A0A0E3RZQ6
It is possible new templates exist for this target since these models were created.
Available Structures
55 Experimental Structures
Description | PDB ID | Oligo-state | Range | Ligands | ||
---|---|---|---|---|---|---|
PylRS Y306G, Y384F, I405R mutant in complex with AMP-PNP | homo-2-mer | 4×MG; 2×ANP; 2×1PE; 8×EDO; | ||||
Assess | ||||||
PylRS Y306G, Y384F, I405R mutant in complex with adenylated norbornene | homo-2-mer | 2×MG; 2×N0B; 2×PEG; 4×EDO; | ||||
Assess | ||||||
Crystal structure of the catalytic domain of pyrrolysyl-tRNA synthetase | homo-2-mer | |||||
Assess | ||||||
Crystal structure of Methanosarcina mazei PylRS(Y306A/Y384F) complexed with pTmdZLys | homo-2-mer | 6×MG; 2×ATP; 2×9VR; 4×K; | ||||
Assess | ||||||
Crystal structure of Methanosarcina mazei PylRS(Y306A/Y384F) complexed with oAzZLys | homo-2-mer | 6×MG; 2×ATP; 2×9V0; 4×K; | ||||
Assess | ||||||
Crystal structure of Methanosarcina mazei PylRS(Y306A/Y384F) complexed with oClZLys | homo-2-mer | 6×MG; 2×ATP; 4×9V6; 4×K; 6×EDO; | ||||
Assess | ||||||
Crystal structure of Methanosarcina mazei PylRS(Y306A/Y384F) complexed with TCO*Lys | homo-2-mer | 6×MG; 2×ATP; 2×9U0; 4×K; 2×PEG; | ||||
Assess | ||||||
Crystal structure of Methanosarcina mazei PylRS(Y306A/Y384F) complexed with pAmPyLys | homo-2-mer | 6×MG; 2×ATP; 2×9UF; 6×K; 2×PO4; | ||||
Assess | ||||||
Crystal structure of Methanosarcina mazei PylRS(Y306A/Y384F) complexed with mTmdZLys | homo-2-mer | 6×MG; 2×ATP; 2×9TU; 4×K; | ||||
Assess | ||||||
Crystal structure of Methanosarcina mazei PylRS(Y306A/Y384F) complexed with oBrZLys | homo-2-mer | 6×MG; 2×ATP; 2×9VL; | ||||
Assess | ||||||
Crystal structure of Methanosarcina mazei PylRS(Y306A/Y384F) complexed with mAzZLys | homo-2-mer | 6×MG; 2×ATP; 2×9TR; 2×K; 2×PEG; 2×PGE; | ||||
Assess | ||||||
Crystal structure of Methanosarcina mazei PylRS(Y306A/Y384F) complexed with ZaeSeCys | homo-2-mer | 6×MG; 2×ATP; 2×9U6; | ||||
Assess | ||||||
Crystal structure of Methanosarcina mazei PylRS(Y306A/Y384F) complexed with mEtZLys | homo-2-mer | 6×MG; 2×ATP; 2×9TX; 4×K; 2×PEG; | ||||
Assess | ||||||
Crystal structure of Methanosarcina mazei PylRS(Y306A/Y384F) complexed with BCNLys | homo-2-mer | 6×MG; 2×ATP; 2×9U9; 6×K; | ||||
Assess | ||||||
Crystal structure of Methanosarcina mazei PylRS(Y306A/Y384F) complexed with TeocLys | homo-2-mer | 6×MG; 2×ATP; 2×9VF; | ||||
Assess | ||||||
PylRS C-terminus domain mutant bound with 1-Methyl-L-tryptophan and AMPNP | homo-2-mer | 2×ANP; 4×MG; 2×EXL; 6×EDO; | ||||
Assess | ||||||
Crystal structure of the catalytic domain of MmOmeRS, an O-methyl tyrosyl-tRNA synthetase evolved f… | homo-2-mer | 4×MG; 2×0A1; 10×EDO; 2×ANP; | ||||
Assess | ||||||
PylRS C-terminus domain mutant bound with D-3-bromophenylalanine and AMPNP | homo-2-mer | 2×ANP; 4×MG; 2×FXF; | ||||
Assess | ||||||
Crystal structure of Methanosarcina mazei PylRS(Y306A/Y384F) complexed with ZLys | homo-2-mer | 6×MG; 2×ATP; 4×9VC; 4×K; | ||||
Assess | ||||||
Crystal structure of the catalytic domain of pyrrolysyl-tRNA synthetase in complex with BocLys and … | homo-2-mer | 4×MG; 2×ANP; 2×LBY; 2×EDO; | ||||
Assess | ||||||
Crystal structure of the catalytic domain of pyrrolysyl-tRNA synthetase in complex with pyrrolysine… | homo-2-mer | 4×MG; 2×PYL; 2×ANP; | ||||
Assess | ||||||
The structure of pyrrolysyl-tRNA synthetase bound to an ATP analogue | homo-2-mer | 4×MG; 2×ANP; 22×EDO; | ||||
Assess | ||||||
Crystal structure of Methanosarcina mazei PylRS(Y306A/Y384F) complexed with pNO2ZLys | homo-2-mer | 6×MG; 2×ATP; 2×9UC; 2×CIT; 6×K; | ||||
Assess | ||||||
Pyrrolysine tRNA Synthetase bound to a pyrrolysine analogue (cyc) and ATP | homo-2-mer | 4×MG; 2×ATP; 20×EDO; 2×CCL; | ||||
Assess | ||||||
Crystal structure of the catalytic domain of pyrrolysyl-tRNA synthetase in complex with AMPPNP (re-… | homo-2-mer | 2×ANP; 4×MG; | ||||
Assess | ||||||
Crystal Structure of the C-terminal domain of PylRS mutant bound with 3-benzothienyl-l-alanine and … | homo-2-mer | 6×MG; 2×ATP; 14×EDO; 2×4OG; | ||||
Assess | ||||||
Crystal structure of the catalytic domain of pyrrolysyl-tRNA synthetase in complex with AlocLys-AMP… | homo-2-mer | 2×2PN; 2×AYB; | ||||
Assess | ||||||
Pyrrolysyl-tRNA synthetase bound to adenylated pyrrolysine and pyrophosphate | homo-2-mer | 20×EDO; 2×YLY; 2×POP; | ||||
Assess | ||||||
Pyrrolysyl-tRNA synthetase bound to adenylated pyrrolysine and pyrophosphate | homo-2-mer | 20×EDO; 2×YLY; 2×POP; | ||||
Assess | ||||||
Crystal Structure of the C-terminal domain of IFRS bound with 3-iodo-L-Phe and ATP | homo-2-mer | 6×MG; 2×ATP; 2×33S; 14×EDO; | ||||
Assess | ||||||
Crystal structure of pyrrolysyl-tRNA synthetase (N346D/C348S/Y384F) in complex with o-Chlorophenyla… | homo-2-mer | 2×ANP; 2×2L5; | ||||
Assess | ||||||
Structure of pyrrolysyl-tRNA synthetase in complex with adenylated propionyl lysine | homo-2-mer | 2×YLP; 2×MG; 10×EDO; 2×POP; | ||||
Assess | ||||||
Crystal structure of the catalytic domain of pyrrolysyl-tRNA synthetase in triclinic crystal form | homo-2-mer | 2×AMP; 2×PO4; | ||||
Assess | ||||||
Crystal structure of the SeMet substituted catalytic domain of pyrrolysyl-tRNA synthetase | homo-2-mer | 2×ANP; 4×MG; | ||||
Assess | ||||||
Crystal Structure of the C-terminal domain of IFRS bound with 2-(5-bromothienyl)-L-Ala and ATP | homo-2-mer | 4×MG; 2×ATP; 2×33W; 14×EDO; | ||||
Assess | ||||||
Catalytic domain of Pyrrolysyl-tRNA synthetase mutant Y306A, Y384F in complex with AMPPNP | homo-2-mer | 2×ANP; 40×EDO; 4×MG; 2×AXZ; 2×PO4; | ||||
Assess | ||||||
Catalytic domain of Pyrrolysyl-tRNA synthetase mutant Y306A, Y384F in complex with an adenylated fu… | homo-2-mer | 2×LYS; 2×AMP; 2×FU0; 2×POP; 4×MG; 2×EDO; | ||||
Assess | ||||||
Catalytic domain of polyspecific pyrrolysyl-tRNA synthetase mutant N346A/C348A in complex with AMPP… | homo-2-mer | 2×ANP; 4×MG; | ||||
Assess | ||||||
PylRS C-terminus domain mutant bound with L-3-chlorophenylalanine and AMPNP | homo-2-mer | 2×ANP; 4×MG; 2×FCL; | ||||
Assess | ||||||
PylRS C-terminus domain mutant bound with 3-Benzothienyl-L-alanine and AMPNP | homo-2-mer | 2×ANP; 4×MG; 2×4OG; | ||||
Assess | ||||||
PylRS C-terminus domain mutant bound with D-3-trifluoromethylphenylalanine and AMPNP | homo-2-mer | 2×ANP; 4×MG; 2×FXC; | ||||
Assess | ||||||
Catalytic domain of Pyrrolysyl-tRNA synthetase mutant Y306A, Y384F in its apo form | homo-2-mer | 2×PEG; 8×EDO; | ||||
Assess | ||||||
PylRS C-terminus domain mutant bound with D-3-chlorophenylalanine and AMPNP | homo-2-mer | 4×MG; 2×ANP; 2×FXL; | ||||
Assess | ||||||
PylRS C-terminus domain mutant in complex with 3-Benzothienyl-D-alanine and AMPNP | homo-2-mer | 2×ANP; 4×MG; 2×EXR; | ||||
Assess | ||||||
Catalytic domain of polyspecific pyrrolysyl-tRNA synthetase mutant Y306A/N346A/C348A/Y384F in compl… | homo-2-mer | 2×ANP; 4×MG; 2×EDO; 2×PEG; 2×CL; | ||||
Assess | ||||||
PylRS C-terminus domain mutant bound with 1-Formyl-L-tryptophan and AMPNP | homo-2-mer | 2×ANP; 4×MG; 2×TRF; | ||||
Assess | ||||||
PylRS C-terminus domain mutant bound with L-3-trifluoromethylphenylalanine and AMPNP | homo-2-mer | 4×MG; 2×ANP; 2×FX9; | ||||
Assess | ||||||
PylRS C-terminus domain mutant bound with 3-(1-Naphthyl)-L-alanine and AMPNP | homo-2-mer | 2×ANP; 4×MG; 2×ALN; | ||||
Assess | ||||||
PylRS C-terminus domain mutant bound with L-3-bromophenylalanine and AMPNP | homo-2-mer | 2×ANP; 2×6CV; 4×MG; | ||||
Assess | ||||||
Structure of pyrrolysyl-tRNA synthetase in complex with adenylated propargyloxycarbonyl lysine | monomer | 1×YLA; 1×MG; 5×EDO; | ||||
Assess | ||||||
Structure of pyrrolysyl-tRNA synthetase in complex with adenylated crotonyl lysine | monomer | 1×YLC; 1×MG; 5×EDO; | ||||
Assess | ||||||
Crystal Structure of the C-terminal domain of AcKRS-1 bound with N-acetyl-lysine and ADPNP | monomer | 1×ANP; 6×EDO; 1×ALY; | ||||
Assess | ||||||
Structure of pyrrolysyl-tRNA synthetase in complex with adenylated butyryl lysine | monomer | 1×YLB; 1×MG; 5×EDO; | ||||
Assess | ||||||
Crystal structure of the tRNA binding domain of Pyrrolysyl-tRNA synthetase bound to tRNA(Pyl) | monomer | 1×ZN; | ||||
Assess | ||||||
Crystal structure of the tRNA binding domain of Pyrrolysyl-tRNA synthetase mutant (32A NTD) bound t… | monomer | 1×ZN; | ||||
Assess |
5 SWISS-MODEL models
Template | Oligo-state | QMEANDisCo | Range | Ligands | Trg-Tpl Seq id (%) | |
---|---|---|---|---|---|---|
4tqf.1.B | homo-2-mer | 0.89 | 2×ATP; | 99.26 | ||
Assess | ||||||
4tqf.1.B | homo-2-mer | 0.89 | 2×ATP; | 99.26 | ||
Assess | ||||||
4tqf.1.B | homo-2-mer | 0.89 | 2×ATP; | 99.26 | ||
Assess | ||||||
5v6x.1.A | monomer | 0.82 | 1×ZN; | 96.04 | ||
Assess | ||||||
5v6x.1.A | monomer | 0.82 | 1×ZN; | 96.04 | ||
Assess |