Q96662 (POLG_BVDVC) Bovine viral diarrhea virus (strain CP7) (BVDV) (Mucosal disease virus)

Genome polyprotein UniProtKBInterProInteractive Modelling

3907 aa; Sequence (Fasta)

Molecule Processing
N-terminal protease
Capsid protein C
E(rns) glycoprotein
Envelope glycoprotein E1
Envelope glycoprotein E2
p7
Non-structural protein 2-3
Cysteine protease NS2
Serine protease NS3
Non-structural protein 4A
Non-structural protein 4B
Non-structural protein 5A
RNA-directed RNA polymerase

Sequence Features

 49For N-terminal protease activity
 69For N-terminal protease activity
 1456For cysteine protease NS2 activity
 1470For cysteine protease NS2 activity
 1521For cysteine protease NS2 activity
 1667Charge relay system; for serine protease NS3 activity
 1704Charge relay system; for serine protease NS3 activity
 1761Charge relay system; for serine protease NS3 activity
 1144-1164Helical
 1189-1209Helical
 1217-1237Helical
 1247-1267Helical
 1281-1301Helical
 1369-1389Helical
 1577-1597Helical
 168-169Cleavage; by autolysis
 270-271Cleavage; by host signal peptidase
 497-498Cleavage
 659-660Cleavage; by host signal peptidase
 1066-1067Cleavage; by host signal peptidase; partial
 1136-1137Cleavage; by host signal peptidase
 1598-1599Cleavage; by NS2; in cytopathic strains
 2281-2282Cleavage; by serine protease NS3
 2345-2346Cleavage; by serine protease NS3
 2692-2693Cleavage; by serine protease NS3
 3188-3189Cleavage; by serine protease NS3
 1-168Peptidase C53, pestivirus Npro
IPR008751PF05550
 173-228Capsid protein C, pestivirus
IPR021824PF11889
 695-1064Pestivirus envelope glycoprotein E2
IPR032521PF16329
 1333-1531Pestivirus nonstructural protein 2
IPR022120PF12387
 1599-1809Pestivirus NS3, peptidase S31
IPR000280PF05578
 1817-1956DEAD box, Flavivirus
IPR011492PF07652
 1993-2108Helicase, C-terminal
IPR001650PF00271
 3468-3697RNA dependent RNA polymerase, hepatitis C virus
IPR002166PF00998

Sequence Alignments

E(rns) glycoprotein 271-497; PRO_0000038013

DescriptionOligo-stateLigandsStructureRangeDownloadAssess
Crystal structure of the glycoprotein Erns from the pestivirus BVDV-1 in complex with 5'-UMPmonomer NAG;BMA;MAN;SO4;U5P;4dw4 271-431
Crystal structure of the glycoprotein Erns from the pestivirus BVDV-1 in complex with 5'-CMPmonomer NAG;BMA;MAN;SO4;C5P;4dw3 271-431
Crystal structure of the glycoprotein Erns from the pestivirus BVDV-1 in complex with 2'-UMPmonomer NAG;BMA;MAN;SO4;U2P;4dvn 271-431
Crystal structure of the glycoprotein Erns from the pestivirus BVDV-1 in complex with 2'-3'-cyclo-U…monomer NAG;BMA;MAN;SO4;JKM;4dvl 271-431
Crystal structure of the glycoprotein Erns from the pestivirus BVDV-1 in complex with a non-cleavab…monomer NAG;BMA;SO4;CSQ;CSV;1PE;4dw5 271-429
Crystal structure of the glycoprotein Erns from the pestivirus BVDV-1 in complex with Zn ionsmonomer NAG;BMA;MAN;ZN;SO4;4dwc 271-428
Crystal structure of an active-site mutant of the glycoprotein Erns from the pestivirus BVDV-1 in c…monomer NAG;BMA;U;C;SO4;4dw7 271-428
Crystal structure of the glycoprotein Erns from the pestivirus BVDV-1 strain NCP-7monomer NAG;BMA;MAN;SO4;4dvk 271-427
Crystal structure of an active-site mutant of the glycoprotein Erns from the pestivirus BVDV-1 in c…monomer NAG;BMA;SO4;4dwa 271-427

Envelope glycoprotein E2 660-1066; PRO_0000038015

Oligo-stateLigandsQMEANTemplateRangeSeq id (%)DownloadAssess
monomer -1.732yq2.1.A694-1025
76.49

Non-structural protein 2-3 1137-2281; PRO_0000038017

Oligo-stateLigandsQMEANTemplateRangeSeq id (%)DownloadAssess
monomer -1.295wx1.1.A1599-2281
91.22

Serine protease NS3 1599-2281; PRO_0000038019

Oligo-stateLigandsQMEANTemplateRangeSeq id (%)DownloadAssess
monomer -1.295wx1.1.A1599-2281
91.22

Non-structural protein 5A 2693-3188; PRO_0000038022

DescriptionOligo-stateLigandsStructureRangeDownloadAssess
NMR structure of the in-plane membrane anchor domain [1-28] of the monotopic NonStructural Protein …monomer 2ajo 2693-2720
NMR structure of the in-plane membrane anchor domain [1-28] of the monotopic Non Structural Protein…monomer 2ajj 2693-2720
NMR structure of the in-plane membrane anchor domain [1-28] of the monotopic NonStructural Protein …monomer 2ajm 2693-2720
NMR structure of the in-plane membrane anchor domain [1-28] of the monotopic NonStructural Protein …monomer 2ajn 2693-2720

RNA-directed RNA polymerase 3189-3907; PRO_0000038023

DescriptionOligo-stateLigandsStructureRangeDownloadAssess
Bovine viral diarrhea virus CP7-R12 RNA-dependent RNA polymerasemonomer 2cjq 3280-3860
Oligo-stateLigandsQMEANTemplateRangeSeq id (%)DownloadAssess
monomer -1.475y6r.1.A3200-3866
71.86
monomer -1.521s4f.2.A3280-3862
91.41