Q96EY7 | SWISS-MODEL Repository

Q96EY7 (PTCD3_HUMAN) Homo sapiens (Human)

Small ribosomal subunit protein mS39 UniProtKB InterPro STRING Interactive Modelling

It is possible new templates exist for this target since these models were created.

Available Structures

17 Experimental Structures

Description	PDB ID	Oligo-state	Range	Ligands
Assembly intermediate of human mitochondrial ribosome small subunit without mS37 in complex with RB…	7po0 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer O15235; O60783; P51398; P82650; P82663; P82664; P82673; P82675; P82912; P82914; P82921; P82930; P82932; P82933; Q8N0V3; Q92552; Q92665; Q96EL2; Q9BYN8; Q9NWT8; Q9Y291; Q9Y2Q9; Q9Y2R5; Q9Y2R9; Q9Y399; Q9Y3D3; Q9Y3D5; Q9Y3D9; Q9Y676;	55-670	1×NAD; 65×MG; 17×K; 1×ZN; 2×FES; 1×ATP; 1×GDP;
Assess
Assembly intermediate of human mitochondrial ribosome small subunit without mS37 in complex with RB…	7pnz SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer A6NJ78; O15235; O60783; P51398; P82650; P82663; P82664; P82673; P82675; P82912; P82914; P82921; P82930; P82932; P82933; Q8N0V3; Q92552; Q92665; Q96EL2; Q9BYN8; Q9NWT8; Q9Y291; Q9Y2Q9; Q9Y2R5; Q9Y2R9; Q9Y399; Q9Y3D3; Q9Y3D5; Q9Y3D9; Q9Y676;	55-670	1×NAD; 61×MG; 17×K; 1×ZN; 2×FES; 1×ATP; 1×GDP; 1×SAH;
Assess
Initiation complex of human mitochondrial ribosome small subunit with IF2, fMet-tRNAMet and mRNA	7po2 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer O15235; O60783; P46199; P51398; P52815; P82650; P82663; P82664; P82673; P82675; P82912; P82914; P82921; P82930; P82932; P82933; Q92552; Q92665; Q96BP2; Q96EL2; Q9BYN8; Q9NWT8; Q9Y291; Q9Y2Q9; Q9Y2R5; Q9Y2R9; Q9Y399; Q9Y3D3; Q9Y3D5; Q9Y3D9; Q9Y676;	55-670	72×MG; 20×K; 1×ZN; 2×FES; 1×ATP; 1×GDP; 1×FME; 1×GTP;
Assess
Initiation complex of human mitochondrial ribosome small subunit with IF3	7po1 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer O15235; O60783; P51398; P82650; P82663; P82664; P82673; P82675; P82912; P82914; P82921; P82930; P82932; P82933; Q92552; Q92665; Q96BP2; Q96EL2; Q9BYN8; Q9NWT8; Q9Y291; Q9Y2Q9; Q9Y2R5; Q9Y2R9; Q9Y399; Q9Y3D3; Q9Y3D5; Q9Y3D9; Q9Y676;	55-670	71×MG; 20×K; 1×ZN; 2×FES; 1×ATP; 1×GDP;
Assess
Assembly intermediate of human mitochondrial ribosome small subunit without mS37 in complex with RB…	7pny SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer A6NJ78; O15235; O60783; P51398; P82650; P82663; P82664; P82673; P82675; P82912; P82914; P82921; P82930; P82932; P82933; Q8N0V3; Q92552; Q92665; Q96EL2; Q9BYN8; Q9NWT8; Q9Y291; Q9Y2Q9; Q9Y2R5; Q9Y2R9; Q9Y399; Q9Y3D3; Q9Y3D5; Q9Y3D9; Q9Y676;	55-670	1×NAD; 61×MG; 20×K; 1×ZN; 2×FES; 1×ATP; 1×GDP; 1×SAH;
Assess
Human mitochondrial ribosome small subunit	7po3 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer O15235; O60783; P51398; P82650; P82663; P82664; P82673; P82675; P82912; P82914; P82921; P82930; P82932; P82933; Q92552; Q92665; Q96BP2; Q96EL2; Q9BYN8; Q9NWT8; Q9Y291; Q9Y2Q9; Q9Y2R5; Q9Y2R9; Q9Y399; Q9Y3D3; Q9Y3D5; Q9Y3D9; Q9Y676;	55-670	64×MG; 21×K; 1×ZN; 2×FES; 1×ATP; 1×GDP;
Assess
Human mitochondrial ribosome small subunit in complex with IF3, GMPPMP and streptomycin	7p2e SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer O15235; O60783; P51398; P82650; P82663; P82664; P82673; P82675; P82912; P82914; P82921; P82930; P82932; P82933; Q92552; Q92665; Q96BP2; Q96EL2; Q9BYN8; Q9H2K0; Q9NWT8; Q9Y291; Q9Y2Q9; Q9Y2R5; Q9Y2R9; Q9Y399; Q9Y3D3; Q9Y3D5; Q9Y3D9; Q9Y676;	55-670	1×NAD; 1×SPM; 1×5I0; 21×K; 62×MG; 1×ZN; 2×FES; 1×ATP; 1×GNP;
Assess
Assembly intermediate of human mitochondrial ribosome small subunit without mS37 in complex with RB…	7pnx SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer A6NJ78; O15235; O60783; P51398; P82650; P82663; P82664; P82673; P82675; P82912; P82914; P82921; P82930; P82932; P82933; Q8N0V3; Q92552; Q92665; Q96EL2; Q9BYN8; Q9NWT8; Q9Y291; Q9Y2Q9; Q9Y2R5; Q9Y2R9; Q9Y399; Q9Y3D3; Q9Y3D5; Q9Y3D9; Q9Y676;	55-670	1×NAD; 64×MG; 16×K; 1×ZN; 2×FES; 1×ATP; 1×GDP; 1×SAH;
Assess
Human mitochondrial small subunit assembly intermediate (State C*)	8csu SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer O15235; O60783; P51398; P82650; P82663; P82664; P82673; P82675; P82912; P82914; P82921; P82930; P82932; P82933; Q8N0V3; Q8WVM0; Q92552; Q92665; Q96EL2; Q9BYN8; Q9H7H0; Q9NWT8; Q9Y291; Q9Y2Q9; Q9Y2R5; Q9Y2R9; Q9Y399; Q9Y3D3; Q9Y3D5; Q9Y3D9; Q9Y676;	56-667	1×SF4; 1×SAM; 5×K; 26×MG; 1×NAD; 1×ZN; 2×FES; 1×ATP; 1×GDP;
Assess
Human mitochondrial small subunit assembly intermediate (State D)	8css SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer O15235; O60783; P51398; P82650; P82663; P82664; P82673; P82675; P82912; P82914; P82921; P82930; P82932; P82933; Q8IVS2; Q8N0V3; Q92552; Q92665; Q96EL2; Q9BYN8; Q9H7H0; Q9NWT8; Q9Y291; Q9Y2Q9; Q9Y2R5; Q9Y2R9; Q9Y399; Q9Y3D3; Q9Y3D5; Q9Y3D9; Q9Y676;	56-667	1×SF4; 1×SAM; 7×K; 32×MG; 1×NAD; 1×ZN; 2×FES; 1×ATP; 1×GDP;
Assess
Human mitochondrial small subunit assembly intermediate (State B)	8csq SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer O15235; O60783; O75616; P51398; P82650; P82663; P82664; P82673; P82675; P82914; P82921; P82930; P82932; P82933; Q8IVS2; Q8WVM0; Q92552; Q92665; Q96EL2; Q9BYN8; Q9H7H0; Q9NWT8; Q9Y291; Q9Y2Q9; Q9Y2R5; Q9Y2R9; Q9Y399; Q9Y3D3; Q9Y3D5; Q9Y3D9; Q9Y676;	56-667	1×SF4; 1×SAM; 4×K; 27×MG; 1×ZN; 2×FES; 1×ATP; 1×GDP;
Assess
Human mitochondrial small subunit assembly intermediate (State C)	8csr SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer O15235; O60783; P51398; P82650; P82663; P82664; P82673; P82675; P82912; P82914; P82921; P82930; P82932; P82933; Q8IVS2; Q8N0V3; Q8WVM0; Q92552; Q92665; Q96EL2; Q9BYN8; Q9H7H0; Q9NWT8; Q9Y291; Q9Y2Q9; Q9Y2R5; Q9Y2R9; Q9Y399; Q9Y3D3; Q9Y3D5; Q9Y3D9; Q9Y676;	56-667	1×SF4; 1×SAM; 5×K; 31×MG; 1×NAD; 1×ZN; 2×FES; 1×ATP; 1×GDP;
Assess
Human mitochondrial small subunit assembly intermediate (State E)	8cst SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer O15235; O60783; P51398; P82650; P82663; P82664; P82673; P82675; P82912; P82914; P82921; P82930; P82932; P82933; Q8N0V3; Q92552; Q92665; Q96EL2; Q9BYN8; Q9H7H0; Q9NWT8; Q9Y291; Q9Y2Q9; Q9Y2R5; Q9Y2R9; Q9Y399; Q9Y3D3; Q9Y3D5; Q9Y3D9; Q9Y676;	56-667	1×SF4; 1×SAM; 4×K; 30×MG; 1×NAD; 1×ZN; 2×FES; 1×ATP; 1×GDP;
Assess
Structure of human mitochondrial 28S ribosome in complex with mitochondrial IF3	6rw4 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer O15235; O60783; P51398; P82650; P82663; P82664; P82673; P82675; P82912; P82914; P82921; P82930; P82932; P82933; Q92552; Q92665; Q96BP2; Q96EL2; Q9BYN8; Q9H2K0; Q9NWT8; Q9Y291; Q9Y2Q9; Q9Y2R5; Q9Y2R9; Q9Y399; Q9Y3D3; Q9Y3D5; Q9Y3D9; Q9Y676;	55-666	1×NAD; 1×SPM; 1×SRY; 60×MG; 17×K; 1×ZN; 2×FES; 1×ATP; 1×GNP;
Assess
Human mitochondrial small subunit assembly intermediate (State A)	8csp SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer O15235; O60783; O75616; P51398; P82650; P82663; P82664; P82673; P82675; P82914; P82921; P82930; P82932; P82933; Q8IVS2; Q8NC60; Q8WVM0; Q92552; Q92665; Q96EL2; Q9BYN8; Q9H7H0; Q9Y291; Q9Y2Q9; Q9Y2R5; Q9Y2R9; Q9Y399; Q9Y3D3; Q9Y3D5; Q9Y3D9; Q9Y676;	56-667	1×SF4; 1×SAM; 4×K; 28×MG; 2×FES; 1×ZN; 1×ATP; 1×GDP;
Assess
Structure of human mitochondrial 28S ribosome in complex with mitochondrial IF2 and IF3	6rw5 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer O15235; O60783; P46199; P51398; P82650; P82663; P82664; P82673; P82675; P82912; P82914; P82921; P82930; P82932; P82933; Q92552; Q92665; Q96BP2; Q96EL2; Q9BYN8; Q9H2K0; Q9NWT8; Q9Y291; Q9Y2Q9; Q9Y2R5; Q9Y2R9; Q9Y399; Q9Y3D3; Q9Y3D5; Q9Y3D9; Q9Y676;	55-666	1×NAD; 1×SPM; 1×SRY; 61×MG; 17×K; 1×ZN; 2×FES; 1×ATP; 2×GNP;
Assess
28S human mitochondrial small ribosomal subunit with mtRF1 and P-site tRNA	8ois SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer O15235; O60783; O75570; P49406; P51398; P82650; P82663; P82664; P82673; P82675; P82912; P82914; P82921; P82930; P82932; P82933; Q7Z7F7; Q92552; Q92665; Q96BP2; Q96EL2; Q9BYN8; Q9NWT8; Q9Y291; Q9Y2Q9; Q9Y2R5; Q9Y2R9; Q9Y399; Q9Y3D3; Q9Y3D5; Q9Y3D9; Q9Y676;	55-666	17×K; 126×MG; 1×MET; 1×ZN; 2×FS2; 1×ATP; 1×GDP;
Assess

5 SWISS-MODEL models

Template	Oligo-state	QMEANDisCo	Range	Trg-Tpl Seq id (%)
8cst.1.D	monomer	0.75	56-667	100.00
Assess
7nql.77.A	monomer	0.64	55-671	78.96
Assess
5orq.1.A	monomer	0.58	255-643	20.74
Assess
5orq.1.A	monomer	0.54	156-584	18.82
Assess
5orm.1.A	monomer	0.53	242-649	20.54
Assess

Model ID	Oligo-state	Avg pLDDT	Range	Trg-Mdl Seq Id (%)

Model ID	Oligo-state	Avg Confidence	Range	Trg-Mdl Seq id (%)

1 SWISS-MODEL model built on isoform sequence

Template	Isoform	Oligo-state	QMEANDisCo	Range	Ligands	Trg-Tpl Seq id (%)
Isoform 2	8cst.1.D	monomer	0.77	3-258		99.28
Assess

Q96EY7 (PTCD3_HUMAN) Homo sapiens (Human)

Small ribosomal subunit protein mS39 UniProtKBInterProSTRINGInteractive Modelling

Available Structures

17 Experimental Structures

5 SWISS-MODEL models

1 SWISS-MODEL model built on isoform sequence

Alignments

Background

Resolution

Small ribosomal subunit protein mS39 UniProtKB InterPro STRING Interactive Modelling