Q97W02 (DPO4_SACS2) Saccharolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2)(Sulfolobus solfataricus)

DNA polymerase IV UniProtKBInterProSTRINGInteractive Modelling

352 aa; Sequence (Fasta) Identical sequences: Saccharolobus solfataricus: D0KN12; A0A0E3K6E9

Sequence Features

 106
 7Magnesium
 105Magnesium
 12Substrate discrimination
 6-155UmuC domain
IPR001126PF00817
 169-199DNA polymerase type-Y, HhH motif
IPR024728PF11798
 240-342DNA polymerase, Y-family, little finger domain
IPR017961PF11799

Sequence Alignments

Experimental structures

DescriptionOligo-stateLigandsStructureRangeDownloadAssess
Structural insight into recruitment of translesion DNA polymerase Dpo4 to sliding clamp PCNA Heteromer
P57766; Q97Z84;
26×EDO;PEG;1PE;GOL;PGE;3fds1-352
Mechanism of Template-Independent Nucleotide Incorporation Catalyzed by a Template-Dependent DNA Po…monomer CA;DDS;EDO;2imw1-348
Complex structure of Sulfolobus solfataricus DPO4 and DNA duplex containing a hydrophobic thymine i…monomer CA;DCT;2v9w1-344
CRYSTAL STRUCTURE of DPO4 LINKER REGION P236A MUTANT WITH AN INCOMING D-dCDPmonomer YYY;CA;ACT;GOL;4qwb1-343
Crystal structures of mutant Dpo4 DNA polymerases with 8-oxoG containing DNA template-primer constr…monomer DGT;CA;2uvv1-343
Crystal structures of mutant Dpo4 DNA polymerases with 8-oxoG containing DNA template-primer constr…monomer DGT;CA;2uvu1-343
Complex structure of Sulfolobus solfataricus DPO4 and DNA duplex containing a hydrophobic thymine i…monomer CA;DCT;2va21-343
Complex structure of Sulfolobus solfataricus DPO4 and DNA duplex containing a hydrophobic thymine i…monomer DGT;CA;2va31-343
Ternary complex of Y-family DNA polymerase Dpo4 with (5'S)-8,5'-Cyclo-2'-deoxyguanosine and dTTPmonomer MG;DOC;CA;TTP;4tqr1-342
The Molecular Basis of Selectivity of Nucleoside Triphosphate Incorporation Opposite O6-Benzylguani…monomer CA;DGT;2jej1-342
DNA Adduct Bypass Polymerization by Sulfolobus solfataricus Dpo4. Analysis and Crystal Structures o…monomer CA;2bq31-342
Ternary complex of Y-family DNA polymerase Dpo4 with (5'S)-8,5'-Cyclo-2'-deoxyguanosine and dCTPmonomer DCP;MG;DOC;4tqs1-342
Crystal structures of mutant Dpo4 DNA polymerases with 8-oxoG containing DNA template-primer constr…monomer DGT;CA;2uvw1-342
DNA Adduct Bypass Polymerization by Sulfolobus solfataricus Dpo4. Analysis and Crystal Structures o…monomer DG;CA;2br01-342
The Molecular Basis of Selectivity of Nucleotide Triphosphate Incorporation Opposite O6-Benzylguani…monomer DGT;CA;2jef1-342
Y-family DNA polymerase Dpo4 in complex with DNA containing abasic lesionmonomer CA;ATP;1n481-342
BINARY COMPLEX OF SULFOLOBUS SOLFATARICUS DPO4 DNA POLYMERASE AND 1, N2-ETHENOGUANINE MODIFIED DNA,…monomer 2xc91-342
Bypass of a bulky adduct dG1,8 by DPO4monomer CA;NA;TRS;4rzr1-342
Efficient and High Fidelity Incorporation of dCTP Opposite 7,8- Dihydro-8-oxodeoxyguanosine by Sulf…monomer DG;CA;2c281-342
Binary complex of Dpo4 bound to N2,N2-dimethyl-deoxyguanosine modified DNAmonomer MG;2w9b1-342
Replication of N2,3-Ethenoguanine by DNA Polymerasesmonomer DCP;MG;CA;3v6h1-342
Replication of N2,3-Ethenoguanine by DNA Polymerasesmonomer DCP;MG;3v6j1-342
The Molecular Basis of Selectivity of Nucleoside Triphosphate Incorporation Opposite O6-Benzylguani…monomer DGT;CA;2jeg1-342
The Molecular Basis of Selectivity of Nucleoside Triphosphate Incorporation Opposite O6-Benzylguani…monomer CA;DGT;2jei1-342
TERNARY CRYSTAL STRUCTURES of A Y-FAMILY DNA POLYMERASE DPO4 FROM SULFOLOBUS SOLFATARICUS IN COMPLE…monomer CA;ACT;LTP;DOC;4qwc1-342
Ternary complex of Sulfolobus solfataricus Dpo4 DNA polymerase, O6- methylguanine modified DNA, and…monomer CA;DGT;2j6u1-342
DNA Adduct Bypass Polymerization by Sulfolobus solfataricus Dpo4. Analysis and Crystal Structures o…monomer DAD;CA;2bqu1-342
Non-productive complex of the Y-family DNA polymerase Dpo4 with dGTP skipping the M1dG adduct to pa…monomer DGT;CA;2v4r1-342
Ternary complex of Sulfolobus solfataricus Dpo4 DNA polymerase, O6- methylguanine modified DNA, and…monomer DTP;CA;2j6s1-342
TERNARY COMPLEX OF SULFOLOBUS SOLFATARICUS DPO4 DNA POLYMERASE, 7,8- DIHYDRO-8-OXODEOXYGUANINE MODI…monomer DGT;MG;2xca1-342
Efficient and High Fidelity Incorporation of dCTP Opposite 7,8- Dihydro-8-oxodeoxyguanosine by Sulf…monomer DCT;CA;2c2r1-342
Efficient and High Fidelity Incorporation of dCTP Opposite 7,8- Dihydro-8-oxodeoxyguanosine by Sulf…monomer DGT;CA;2c221-342
Efficient and High Fidelity Incorporation of dCTP Opposite 7,8- Dihydro-8-oxodeoxyguanosine by Sulf…monomer DTP;CA;2c2d1-342
Post-insertion complex of the Y-family DNA polymerase Dpo4 with M1dG containing template DNAmonomer DGT;CA;2v4q1-342
Ternary complex of Sulfolobus solfataricus Dpo4 DNA polymerase, O6- methylguanine modified DNA, and…monomer DTP;CA;2j6t1-342
Ternary complex of Dpo4 bound to N2,N2-dimethyl-deoxyguanosine modified DNA with incoming dGTPmonomer DGT;MG;2w9a1-342
TERNARY COMPLEX OF SULFOLOBUS SOLFATARICUS DPO4 DNA POLYMERASE, 7,8- DIHYDRO-8-OXODEOXYGUANINE MODI…monomer MG;DCP;2xcp1-342
Efficient and High Fidelity Incorporation of dCTP Opposite 7,8- Dihydro-8-oxodeoxyguanosine by Sulf…monomer DCP;CA;2c2e1-342
Crystal structure of Dpo4 in complex with N-MC-dAMP opposite dTmonomer 0OH;CA;4gc61-342
Ternary complex of Dpo4 bound to N2,N2-dimethyl-deoxyguanosine modified DNA with incoming dTTPmonomer MG;TTP;2w9c1-342
Crystal structures of mutant Dpo4 DNA polymerases with 8-oxoG containing DNA template-primer constr…monomer DGT;CA;2uvr1-342
Y-family DNA polymerase Dpo4 bypassing N2-naphthyl-guanine adduct in anti orientationmonomer DGT;MG;2w8l1-342
Y-family DNA polymerase Dpo4 bypassing N2-naphthyl-guanine adduct in syn orientationmonomer DGT;MG;2w8k1-342
Replication of N2,3-Ethenoguanine by DNA Polymerasesmonomer MG;CA;NA;3v6k1-342
Crystal Structure of a Y-family DNA Polymerase in a Ternary Complex with DNA Substrates and an Inco…monomer CA;MG;ADI;1jx41-341
Snapshots of a Y-family DNA polymerase in replication: Dpo4 in apo and binary/ternary complex formsmonomer PEG;GOL;2rdi1-341
Crystal Structure of Dpo4 in complex with DNA containing the major cisplatin lesionmonomer CA;CTP;CPT;3m9n1-341
T-3 ternary complex of Dpo4monomer DCP;CA;3qz71-341
TT-4 ternary complex of Dpo4monomer CA;DCP;3qz81-341
Crystal Structure of Dpo4 in complex with DNA containing the major cisplatin lesionmonomer CA;ATP;CPT;3m9o1-341
Dpo4 post-insertion complex with the N-(deoxyguanosin-8-yl)-1-aminopyrene lesionmonomer DGT;CA;GTP;4fbt1-341
DPO with AT matchedmonomer CA;MG;DDY;1s9f1-341
REPLICATION OF A CIS-SYN THYMINE DIMER AT ATOMIC RESOLUTIONmonomer CA;ATP;1rys1-341
TERNARY CRYSTAL STRUCTURES of A Y-FAMILY DNA POLYMERASE DPO4 FROM SULFOLOBUS SOLFATARICUS IN COMPLE…monomer 3TT;CA;4qwd1-341
Snapshots of replication through an abasic lesion: structural basis for base substitution and frame…monomer CA;MG;TTP;1s0o1-341
Fidelity of Dpo4: effect of metal ions, nucleotide selection and pyrophosphorolysismonomer CA;MG;DTP;2agq1-341
Crystal Structure of a Y-Family DNA Polymerase in a Ternary Complex with DNA Substrates and an Inco…monomer EDO;CA;MG;DG3;1jxl1-341
Snapshots of replication through an abasic lesion: structural basis for base substitution and frame…monomer CA;DCP;1s101-341
TERNARY CRYSTAL STRUCTURES OF A Y-FAMILY DNA POLYMERASE DPO4 FROM SULFOLOBUS SOLFATARICUS in COMPLE…monomer 0G8;CA;4qwa1-341
TERNARY CRYSTAL STRUCTURES of A Y-FAMILY DNA POLYMERASE DPO4 FROM SULFOLOBUS SOLFATARICUS IN COMPLE…monomer FTD;CA;4qwe1-341
Snapshots of a Y-family DNA polymerase in replication: Dpo4 in apo and binary/ternary complex formsmonomer CA;TMP;GOL;2rdj1-341
Bypass of Major Benzopyrene-dG Adduct by Y-Family DNA Polymerase with Unique Structural Gapmonomer BAP;EDO;GOL;CA;POP;2ibk1-341
REPLICATION OF A CIS-SYN THYMINE DIMER AT ATOMIC RESOLUTIONmonomer CA;ATP;1ryr1-341
TERNARY CRYSTAL STRUCTURES of A Y-FAMILY DNA POLYMERASE DPO4 FROM SULFOLOBUS SOLFATARICUS IN COMPLE…monomer DCP;CA;4qw81-341
Ternary complex of gamma-OHPDG adduct modified dna with dna (-1 primer) polymerase iv and incoming …monomer DGT;CA;4jv11-341
Ternary complex of HNE Adduct modified DNA (5'-CXG-3' vs 13-mer) with Dpo4 and incoming dDGTmonomer DGT;CA;3t5h1-341
DNA Adduct Bypass Polymerization by Sulfolobus solfataricus Dpo4. Analysis and Crystal Structures o…monomer DTP;CA;2bqr1-341
Selectivity of Nucleoside Triphosphate Incorporation Opposite 1,N2-Propanodeoxyguanosine (PdG) by t…monomer CA;DTP;2r8i1-341
Dpo4 Y12A mutant incorporating ADP opposite template dTmonomer CA;ATP;3pr51-341
Y-family DNA polymerase Dpo4 in complex with DNA containing abasic lesionmonomer MG;ATP;1n561-341
DPO4 with GT mismatchmonomer CA;DCT;1s971-341
TERNARY CRYSTAL STRUCTURES of A Y-FAMILY DNA POLYMERASE DPO4 FROM SULFOLOBUS SOLFATARICUS IN COMPLE…monomer 0G4;CA;4qw91-341
Ternary complex of HNE Adduct modified DNA (5'-TXG-3' vs 13-mer) with Dpo4 and incoming dDTPmonomer DTP;CA;3t5j1-341
Selectivity of Nucleoside Triphosphate Incorporation Opposite 1,N2-Propanodeoxyguanosine (PdG) by t…monomer CA;DGT;2r8h1-341
Crystal structure of Dpo4 in complex with DNA duplexmonomer CA;4g3i1-341
Bypass of Major Benzopyrene-dG Adduct by Y-Family DNA Polymerase with Unique Structural Gapmonomer PO4;CA;ATP;EDO;BAP;2ia61-341
Dpo4 polymerase pre-insertion binary complex with the N-(deoxyguanosin-8-yl)-1-aminopyrene lesionmonomer CA;4fbu1-341
Ternary structure of Dpo4 bound to G in the template base paired with incoming dTTPmonomer CA;TTP;5edw1-341
Ternary complex of gamma-OHPDG adduct modified dna (zero primer) with dna polymerase iv and incomin…monomer DGT;CA;4juz1-341
Dpo4 Y12A mutant incorporating dADP opposite template dTmonomer ATP;CA;3pr41-341
Selectivity of Nucleoside Triphosphate Incorporation Opposite 1,N2-Propanodeoxyguanosine (PdG) by t…monomer CA;DGT;2r8g1-341
Crystal structure of a Benzo[a]pyrene Diol Epoxide adduct in a ternary complex with a DNA polymerasemonomer BAP;MG;CA;DTP;1s0m1-341
Ternary complex of Aflatoxin B1 Adduct modified DNA (AFB1-FAPY) with DNA Polymerase IV and incoming…monomer TTP;CA;3pw21-341
Ternary complex of gamma-OHPDG adduct modified dna with dna (-1 primer) polymerase iv and incoming …monomer DTP;CA;4jv21-341
Snapshots of replication through an abasic lesion: structural basis for base substitution and frame…monomer CA;DCP;1s0n1-341
Fidelity of Dpo4: effect of metal ions, nucleotide selection and pyrophosphorolysismonomer MG;CA;POP;2ago1-341
Crystal structure of Dpo4 in complex with S-MC-dADP opposite dTmonomer 0OJ;CA;4gc71-341
Fidelity of Dpo4: effect of metal ions, nucleotide selection and pyrophosphorolysismonomer CA;MG;DGT;2agp1-341
Ternary complex of Aflatoxin B1 Adduct modified DNA (AFB1-N7-Gua) with DNA Polymerase IV and incomi…monomer DTP;CA;AFN;3pw41-341
Ternary complex of Aflatoxin B1 Adduct modified DNA (AFB1-N7-Gua) with DNA Polymerase IV and incomi…monomer DCP;CA;AFN;3pw71-341
Crystal structure of Y-family DNA polymerase Dpo4 extending from a MeFapy-dG:dC pairmonomer DTP;CA;4ruc1-341
Ternary complex of HNE Adduct modified DNA (5'-TXG-3' vs 14-mer) with Dpo4 and incoming dDTPmonomer DTP;CA;3t5k1-341
Ternary complex of HNE Adduct modified DNA (5'-CXG-3' vs 14-mer) with Dpo4 and incoming dDGTmonomer DGT;CA;3t5l1-341
Crystal Structure of Dpo4 in complex with DNA containing the major cisplatin lesionmonomer CTP;CA;GOL;CPT;3m9m1-341
Ternary complex of Aflatoxin B1 Adduct modified DNA (AFB1-FAPY) with DNA Polymerase IV and incoming…monomer DTP;CA;3pw01-341
Ring-Opening of the -OH-PdG Adduct in Ternary Complexes with the Sulfolobus solfataricus DNA polyme…monomer DTP;CA;4jv01-341
Ternary complex of Aflatoxin B1 Adduct modified DNA (AFB1-N7-Gua) with DNA Polymerase IV and incomi…monomer TTP;CA;AFN;3pw51-341
Binary complex of Aflatoxin B1 Adduct modified DNA (AFB1-FAPY) with DNA Polymerase IVmonomer CA;3pvx1-341
Crystal structure of Y-family DNA polymerase Dpo4 bypassing a MeFapy-dG adductmonomer DTP;CA;4rua1-341
Dpo4 extension ternary complex with 3'-terminal primer T base opposite the 1-methylguanine (M1G) le…monomer DGT;CA;3rax2-341
oxoG-modified Insertion Ternary Complexmonomer CA;DCP;2asd2-341
Dpo4 post-extension ternary complex with the correct C opposite the 2-aminofluorene-guanine [AF]G l…monomer TTP;CA;AF;3khr2-341
Dpo4 post-extension ternary complex with misinserted A opposite the 2-aminofluorene-guanine [AF]G l…monomer TTP;CA;AF;3khl2-341
Dpo4 extension ternary complex with 3'-terminal primer C base opposite the 1-methylguanine (MG1) le…monomer DGT;CA;EPE;3raq2-341
oxoG-modified Preinsertion Binary Complexmonomer CA;2asj2-341
Dpo4 extension ternary complex with oxoG(syn)-A(anti) and oxoG(anti)-A(syn) pairsmonomer DGT;CA;3gij2-341
Dpo4 extension ternary complex with 3'-terminal primer C base opposite the 3-methylcytosine (m3c) l…monomer DGT;CA;EPE;3rbd2-341
Dpo4 extension ternary complex with disordered A opposite an oxoG in anti conformationmonomer DGT;CA;NA;3gii2-341
oxoG-modified Postinsertion Binary Complexmonomer CA;2asl2-341
Unmodified preinsertion binary complexmonomer CA;2au02-341
Dpo4 extension ternary complex with 3'-terminal primer A base opposite the 3-methylcytosine (m3c) l…monomer DGT;EPE;CA;3rb62-341
Dpo4 extension ternary complex with a C base opposite the 2-aminofluorene-guanine [AF]G lesionmonomer DGT;CA;AF;3khh2-341
Dpo4 extension ternary complex with oxoG(anti)-G(syn) pairmonomer DGT;CA;3gim2-341
Dpo4 extension ternary complex with oxoG(anti)-T(anti) pairmonomer DGT;CA;3gil2-341
Dpo4 extension ternary complex with 3'-terminal primer A base opposite the 1-methylguanine (m1g) le…monomer DGT;CA;EPE;3rb32-341
Dpo4 extension ternary complex with 3'-terminal primer t base opposite the 3-methylcytosine (m3c) l…monomer DGT;CA;3rbe2-341
Unmodified Insertion Ternary Complexmonomer CA;DCP;2atl2-341
Dpo4 extension ternary complex with 3'-terminal primer G base opposite the 3-methylcytosine (m3c) l…monomer DGT;CA;3rb42-341
Dpo4 extension ternary complex with the oxoG(anti)-C(anti) pairmonomer DGT;CA;3gik2-341
Dpo4 extension ternary complex with misinserted A opposite the 2-aminofluorene-guanine [AF]G lesionmonomer DGT;CA;EPE;AF;3khg2-341
Dpo4 extension ternary complex with 3'-terminal primer G base opposite the 1-methylguanine (M1G) le…monomer DGT;CA;3rb02-341
Y-family DNA polymerase chimera Dpo4-Dpo4-Dbhmonomer CA;4f4z4-247
Y-family DNA polymerase chimera Dbh-Dpo4-Dpo4 #1monomer DCP;CA;4f4w231-341
Y-family DNA polymerase chimera Dbh-Dpo4-Dpo4 #2monomer CA;DCP;4f4x231-341
Y-family DNA polymerase chimera Dbh-Dbh-Dpo4monomer CA;4f50248-341
Y-family DNA polymerase chimera Dbh-Dpo4-Dbhmonomer DCP;CA;4f4y231-247