Q9BY66 (KDM5D_HUMAN) Homo sapiens (Human)

Lysine-specific demethylase 5D UniProtKBInterproStringInteractive Modelling

1539 aa; Sequence (Fasta) ; (Isoform 2; Isoform 3; ) Identical sequences: Homo sapiens: A0A384MR42

Sequence Features

 504Iron; catalytic.
 506Iron; catalytic.
 592Iron; catalytic.
 1186V -> L (in dbSNP:rs1050807). VAR_032991 dbSNP
 316-362PHD-type 1.
 697-749C5HC2.
 1174-1235PHD-type 2.
 15-48JmjN domain
IPR003349PF02375
 82-165ARID DNA-binding domain
IPR001606PF01388
 316-362Zinc finger, PHD-finger
IPR019787PF00628
 491-607JmjC domain
IPR003347PF02373
 697-749Zinc finger, C5HC2-type
IPR004198PF02928
 762-1087Lysine-specific demethylase-like domain
IPR013637PF08429

Sequence Alignments

Experimental structures

DescriptionOligo-stateLigandsStructureRangeDownload
Solution structure of the ARID domain of JARID1D proteinmonomer 2yqe79-171
Solution structure of the PHD domain in SmcY proteinmonomer ZN;2e6r306-384

Homology models

Oligo-stateLigandsQMEANTemplateRangeSeq id (%)ReportDownload
monomer -3.005j1i.1.A957-1069
20.00
monomer -3.523iee.1.A838-994
14.07
monomer -4.061quu.1.A804-998
18.83
monomer NI;-4.405k4l.1.A7-806
64.24

Homology models built on isoform sequence

Isoform #Oligo-stateLigandsQMEANTemplateRangeSeq id (%)ReportDownload
3monomerZN;-3.052e6r.1.A306-384
100.00
2monomerZN;-3.052e6r.1.A249-327
100.00
2monomer-3.105j1i.1.A900-1012
18.82
2monomer-3.475k4l.1.A7-749
64.06
2monomer-3.533iee.1.A781-937
14.07
2monomer-3.642lm1.1.A67-117
84.31
2monomer-3.671wlx.1.A686-792
12.62
3monomerOGA;FE2;-3.693dxu.1.A419-681
36.40
3monomer-4.001quu.1.A836-1029
18.95
2monomerZN;-4.562xb1.1.A1116-1236
19.57
3monomer-4.594uxv.1.A791-1132
11.71
3monomerNI;-4.655k4l.1.A7-837
63.86
2monomer-4.671quu.1.A747-940
18.83