Q9NUW8 | SWISS-MODEL Repository

Q9NUW8 (TYDP1_HUMAN) Homo sapiens (Human)

Tyrosyl-DNA phosphodiesterase 1 UniProtKB InterPro STRING Interactive Modelling

It is possible new templates exist for this target since these models were created.

Available Structures

42 Experimental Structures

Description	PDB ID	Oligo-state	Range	Ligands
Crystal structure of the complex of Tdp1 with duplex DNA	5nwa SMTL PDBe PDBe-KB PDBj PDBsum RCSB	homo-2-mer	160-608
Assess
Crystal structure of the complex of Tdp1 with duplex DNA	5nw9 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	homo-2-mer	161-608
Assess
human Tyrosyl DNA phosphodiesterase	1qzq SMTL PDBe PDBe-KB PDBj PDBsum RCSB	homo-2-mer	161-608
Assess
CRYSTAL STRUCTURE OF HUMAN TYROSYL-DNA PHOSPHODIESTERASE (TDP1)	1jy1 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	monomer	149-608
Assess
Crystal structure of human Tyrosyl-DNA Phosphodiesterase complexed with vanadate, octapeptide KLNYY…	1rff SMTL PDBe PDBe-KB PDBj PDBsum RCSB	monomer	162-608	1×VO4; 1×SPM;
Assess
Crystal structure of human Tyrosyl-DNA Phosphodiesterase complexed with vanadate, octopamine, and t…	1rgt SMTL PDBe PDBe-KB PDBj PDBsum RCSB	monomer	162-608	1×VO4; 1×SPM; 1×OTS; 1×OTR;
Assess
Crystal Structure of a Human Tyrosyl-DNA Phosphodiesterase (Tdp1)-Tungstate Complex	1mu7 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	monomer	162-608	1×WO4; 1×GOL;
Assess
Crystal Structure of a Human Tyrosyl-DNA Phosphodiesterase (Tdp1)-Vanadate Complex	1mu9 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	monomer	162-608	1×VO4; 1×GOL;
Assess
Crystal structure of human Tyrosyl-DNA Phosphodiesterase complexed with vanadate, octopamine, and t…	1rg2 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	monomer	162-608	1×VO4; 1×SPM; 1×OTS; 1×OTR;
Assess
Crystal structure of human Tyrosyl-DNA Phosphodiesterase complexed with vanadate, octopamine, and t…	1rg1 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	monomer	162-608	1×VO4; 1×SPM; 1×OTS;
Assess
Crystal structure of human Tyrosyl-DNA Phosphodiesterase complexed with vanadate, pentapeptide KLNY…	1rfi SMTL PDBe PDBe-KB PDBj PDBsum RCSB	monomer	162-608	1×VO4; 1×SPM;
Assess
The crystal structure of human Tyrosyl-DNA Phosphodiesterase complexed with vanadate, octopamine, a…	1rgu SMTL PDBe PDBe-KB PDBj PDBsum RCSB	monomer	162-608	1×VO4; 1×SPM; 1×OTS;
Assess
Crystal structure of human Tyrosyl-DNA Phosphodiesterase complexed with vanadate, octopamine and tr…	1rh0 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	monomer	162-608	1×VO4; 1×SPM; 1×OTS;
Assess
Crystal structure of human tyrosyl-DNA phosphodiesterase (Tdp1) in complex with vanadate, DNA and a…	1nop SMTL PDBe PDBe-KB PDBj PDBsum RCSB	monomer	162-608	1×VO4;
Assess
Crystal structure of Tdp1 catalytic domain in complex with compound XZ575	6n0d SMTL PDBe PDBe-KB PDBj PDBsum RCSB	monomer	162-607	1×K8J; 1×EDO;
Assess
Crystal structure of Tdp1 catalytic domain in complex with compound XZ574	6n0n SMTL PDBe PDBe-KB PDBj PDBsum RCSB	monomer	162-607	1×KAY; 2×EDO; 1×DMS;
Assess
Structure of Tdp1 catalytic domain in complex with inhibitor XZ635p	6w7j SMTL PDBe PDBe-KB PDBj PDBsum RCSB	monomer	162-607	1×TGM; 1×EDO;
Assess
Crystal structure of Tdp1 catalytic domain in complex with compound XZ578	6n19 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	monomer	162-607	1×K8V; 1×EDO;
Assess
Crystal structure of Tdp1 catalytic domain in complex with compound XZ572	6n0r SMTL PDBe PDBe-KB PDBj PDBsum RCSB	monomer	162-607	1×K8D; 3×EDO; 1×DMS;
Assess
Crystal structure of TDP1 complexed with compound XZ768	7ufz SMTL PDBe PDBe-KB PDBj PDBsum RCSB	monomer	162-607	2×N7U; 4×EDO; 1×DMS;
Assess
Crystal structure of TDP1 complexed with compound XZ766	7ufy SMTL PDBe PDBe-KB PDBj PDBsum RCSB	monomer	162-607	1×N8I; 4×EDO;
Assess
Crystal structure of Tdp1 catalytic domain in complex with Zenobia fragment ZT0911 from cocktail so…	6dhu SMTL PDBe PDBe-KB PDBj PDBsum RCSB	monomer	162-607	1×GHM; 4×EDO;
Assess
Crystal structure of Tdp1 catalytic domain in complex with compound XZ577	6n17 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	monomer	162-607	1×K8Y; 2×EDO; 1×DMS;
Assess
Crystal structure of TDP1 complexed with compound XZ761	8cvq SMTL PDBe PDBe-KB PDBj PDBsum RCSB	monomer	162-607	1×OYH; 1×MPO; 3×EDO;
Assess
Crystal structure of Tdp1 catalytic domain in complex with compound XZ520	6myz SMTL PDBe PDBe-KB PDBj PDBsum RCSB	monomer	162-607	1×K7D; 3×EDO;
Assess
Crystal structure of Tdp1 catalytic domain in complex with compound XZ502	6djf SMTL PDBe PDBe-KB PDBj PDBsum RCSB	monomer	162-607	1×EDO; 1×GNV;
Assess
Structure of Tdp1 catalytic domain in complex with inhibitor XZ634p	6w7k SMTL PDBe PDBe-KB PDBj PDBsum RCSB	monomer	162-607	1×TG7; 1×EDO;
Assess
Crystal structure of Tdp1 catalytic domain in complex with Sigma Aldrich compound CDS010292	6dje SMTL PDBe PDBe-KB PDBj PDBsum RCSB	monomer	162-607	3×EDO; 1×GNY;
Assess
Crystal structure of Tdp1 catalytic domain in complex with compound XZ532	6djj SMTL PDBe PDBe-KB PDBj PDBsum RCSB	monomer	162-607	1×GM7; 3×EDO;
Assess
Crystal structure of Tdp1 catalytic domain in complex with compound XZ522	6dji SMTL PDBe PDBe-KB PDBj PDBsum RCSB	monomer	162-607	1×GOG; 4×EDO;
Assess
Crystal structure of Tdp1 catalytic domain in complex with Zenobia fragment ZT1982 (single soak)	6djd SMTL PDBe PDBe-KB PDBj PDBsum RCSB	monomer	162-607	1×GJP; 2×EDO;
Assess
Crystal structure of Tdp1 catalytic domain in complex with Sigma Aldrich compound PH004941	6dih SMTL PDBe PDBe-KB PDBj PDBsum RCSB	monomer	162-607	1×GJS; 2×EDO;
Assess
Crystal structure of Tdp1 catalytic domain in complex with Zenobia fragment benzene-1,2,4-tricarbox…	6die SMTL PDBe PDBe-KB PDBj PDBsum RCSB	monomer	162-607	1×GHM; 2×EDO;
Assess
Crystal structure of Tdp1 catalytic domain in complex with Zenobia fragment ZT1982 from cocktail so…	6dim SMTL PDBe PDBe-KB PDBj PDBsum RCSB	monomer	162-607	1×GJP; 2×EDO;
Assess
Crystal structure of TDP1 complexed with compound XZ760	8cw2 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	monomer	162-607	1×OYR; 1×DMS; 1×MPO; 4×EDO;
Assess
Structure of Tdp1 catalytic domain in complex with inhibitor XZ633p	6w4r SMTL PDBe PDBe-KB PDBj PDBsum RCSB	monomer	162-607	1×MPO; 1×SZV; 2×EDO;
Assess
Crystal structure of Tdp1 catalytic domain in complex with compound XZ519	6mj5 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	monomer	162-607	3×EDO; 1×JTA;
Assess
Structure of Tdp1 catalytic domain in complex with inhibitor XZ632p	6w7l SMTL PDBe PDBe-KB PDBj PDBsum RCSB	monomer	162-607	1×TGV; 1×EDO;
Assess
Crystal structure of Tdp1 catalytic domain in complex with compound XZ503	6djg SMTL PDBe PDBe-KB PDBj PDBsum RCSB	monomer	162-607	1×EDO; 1×GNJ;
Assess
Crystal structure of Tdp1 catalytic domain in complex with compound XZ515	6djh SMTL PDBe PDBe-KB PDBj PDBsum RCSB	monomer	162-607	1×GNM; 2×EDO;
Assess
Crystal structure of Tdp1 catalytic domain in complex with compound XZ523	6n0o SMTL PDBe PDBe-KB PDBj PDBsum RCSB	monomer	162-607	2×EDO; 1×K8G;
Assess
Crystal structure of Tdp1 catalytic domain in complex with compound XZ530	6mz0 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	monomer	162-607	1×K7A; 1×EDO;
Assess

1 SWISS-MODEL model

Template	Oligo-state	QMEANDisCo	Range	Ligands	Trg-Tpl Seq id (%)
6mj5.1.A	monomer	0.89	162-607	1×JTA;	100.00
Assess

Model ID	Oligo-state	Avg pLDDT	Range	Trg-Mdl Seq Id (%)

Model ID	Oligo-state	Avg Confidence	Range	Trg-Mdl Seq id (%)

1 SWISS-MODEL model built on isoform sequence

Template	Isoform	Oligo-state	QMEANDisCo	Range	Ligands	Trg-Tpl Seq id (%)
Isoform 2	7ufy.1.A	monomer	0.93	19-368		98.01
Assess

Q9NUW8 (TYDP1_HUMAN) Homo sapiens (Human)

Tyrosyl-DNA phosphodiesterase 1 UniProtKBInterProSTRINGInteractive Modelling

Available Structures

42 Experimental Structures

1 SWISS-MODEL model

1 SWISS-MODEL model built on isoform sequence

Alignments

Background

Resolution

Tyrosyl-DNA phosphodiesterase 1 UniProtKB InterPro STRING Interactive Modelling