Q9UGL1 (KDM5B_HUMAN) Homo sapiens (Human)

Lysine-specific demethylase 5B UniProtKBInterProSTRINGInteractive Modelling

1544 aa; Sequence (Fasta) ; (Isoform 2; )

Sequence Features

 499Iron; catalytic.
 501Iron; catalytic.
 587Iron; catalytic.
 309-359PHD-type 1.
 692-744C5HC2.
 1176-1224PHD-type 2.
 1484-1538PHD-type 3.
 299-1544Missing (in MRT65). VAR_081276
 1370-1544Missing (in MRT65). VAR_081277
 33-66JmjN domain
IPR003349PF02375
 100-182ARID DNA-binding domain
IPR001606PF01388
 312-357Zinc finger, PHD-finger
IPR019787PF00628
 486-602JmjC domain
IPR003347PF02373
 692-744Zinc finger, C5HC2-type
IPR004198PF02928
 757-1088Lysine-specific demethylase-like domain
IPR013637PF08429
 1178-1223Zinc finger, PHD-finger
IPR019787PF00628
 1492-1537Zinc finger, PHD-finger
IPR019787PF00628

Sequence Alignments

Experimental structures

DescriptionOligo-stateLigandsStructureRangeDownloadAssess
Crystal structure of human KDM5B in complex with compound 34gmonomer ZN;FQN;PO4;MN;EDO;DMS;6h5226-755
Crystal structure of human KDM5B in complex with compound 16amonomer ZN;MN;DMS;EDO;FQ5;6h4z26-755
Crystal structure of the catalytic domain of human JARID1B in complex with malatemonomer ZN;CL;LMR;MN;EDO;EPE;PO4;5fz826-754
Crystal structure of KDM5B in complex with KDOPZ29amonomer ZN;MN;DMS;EDO;B6T;6eiu26-754
Crystal structure of the catalytic domain of human JARID1B in complex with MC3962monomer ZN;DMS;CL;PO4;MN; 17×EDO;UUN;5fzf26-754
Crystal structure of the catalytic domain of human PLU1 (JARID1B).monomer EPE;ZN;MN; 11×EDO;5a3p26-754
Crystal structure of the catalytic domain of human JARID1B in complex with MC3960monomer ZN;H0X;CL;PO4;MN; 13×EDO;DMS;5fze26-754
Crystal structure of the catalytic domain of human JARID1B in complex with 3D fragment 3-Amino-4-...monomer ZN;CL;BY4;MN; 13×EDO;DMS;PO4;5fyu26-754
Crystal structure of KDM5B in complex with KDOPZ000049a.monomer ZN;MN;DMS;EDO;B7K;6ej026-754
Crystal structure of KDM5B in complex with KDOPZ48a.monomer B7Q;ZN;MN;DMS;EDO;6ej126-754
Crystal structure of KDM5B in complex with S49365a.monomer B7Z;MN;ZN;EDO;6ein26-754
Crystal structure of human JARID1B in complex with 2-oxoglutarate.monomer ZN;CL;MN;EDO;EPE;AKG;5fup26-754
Crystal structure of KDM5B in complex with KDOPZ000034a.monomer B6W;ZN;MN;DMS;EDO;6eiy26-754
Crystal structure of human KDM5B in complex with compound 34amonomer ZN;FO2;PO4;MN;EDO;DMS;6h5026-754
Crystal structure of human KDM5B in complex with compound 34fmonomer FQK;ZN;PO4;MN;EDO;DMS;6h5126-754
Crystal structure of human JARID1B in complex with S40563amonomer ZN;MN;DMS;EDO;5UJ;5lw926-754
Crystal structure of human JARID1B in complex with CCT363901monomer ZN;MN;QAY;EDO;DMS;5fpl26-754
Crystal structure of the catalytic domain of human JARID1B in complex with 3D fragment 2-(2-oxo-2...monomer ZN;NA;PO4;MN; 12×EDO;NYK;DMS;5fyz26-753
Crystal structure of the catalytic domain of human JARID1B in complex with 3D fragment (5-fluoro-...monomer ZN;CL;PO4;MN;WQS; 18×EDO;DMS;5fyt26-753
Crystal structure of the catalytic domain of human JARID1B in complex with oxaloacetatemonomer ZN;OAA;CL;PO4;MN; 17×EDO;EPE;5fyv26-753
Crystal structure of the catalytic domain of human JARID1B in complex with MC1648monomer ZN;MN;DMS; 16×EDO;77J;5fyb26-753
Crystal structure of the catalytic domain of human JARID1B in complex with D-2-hydroxyglutaratemonomer ZN;CL;MN; 14×EDO;EPE;2HG;5fys26-753
Crystal structure of human PLU-1 (JARID1B) in complex with KDM5-C49 (2-(((2-((2-(dimethylamino)et...monomer NI;ZN;MN;EDO;MMK;EPE;5a3t26-753
Crystal structure of the catalytic domain of human JARID1B in complex with MC3095monomer ZN;CL;PO4;MN; 18×EDO;DMS;FIG;5fzi26-753
Crystal structure of the catalytic domain of human JARID1B in complex with MC3948monomer ZN;7IA;CL;PO4;MN;EDO;DMS;EPE;5fzg26-753
'Crystal structure of human PLU-1 (JARID1B) in complex with Pyridine-2, 6-dicarboxylic Acid (PDCA)'monomer ZN;NA;PO4;MN;PD2;EDO;EPE;5a3w26-753
Crystal structure of human PLU-1 (JARID1B) in complex with KDOAM25amonomer ZN;LQT;PO4;MN;EDO;DMS;EPE;5a3n26-753
Crystal structure of the catalytic domain of human JARID1B in complex with pyruvatemonomer EPE;ZN;MN;EDO;PYR;5fy926-753
Crystal structure of the catalytic domain of human JARID1B in complex with Maybridge fragment 4,5...monomer ZN;CL;PO4;MN;D8S; 10×EDO;DMS;EPE;5fzc26-753
Crystal structure of the catalytic domain of human JARID1B in complex with L-2-hydroxyglutaratemonomer ZN;S2G;CL;PO4;MN; 13×EDO;EPE;5fzd26-753
Crystal structure of the catalytic domain of human JARID1B in complex with 3D fragment N,3-dimeth...monomer ZN;CL;PO4;MN;EDO;DMS;NRW;5fzk26-753
Crystal structure of the catalytic domain of human JARID1B in complex with Maybridge fragment thi...monomer ZN;CL;PO4;MN;EDO;DMS;NUK;EPE;5fz926-753
Crystal structure of the catalytic domain of human JARID1B in complex with 3D fragment (3R)-1-[(3...monomer ZN;DMS;CL;PO4;MN; 10×EDO;P6B;5fz426-753
Crystal structure of the catalytic domain of human JARID1B in complex with Maybridge fragment 4,5...monomer ZN;0TI;CL;MN;EDO;DMS;EPE;5fzh26-753
Crystal structure of the catalytic domain of human JARID1B in complex with 3D fragment 2-piperidi...monomer ZN;CL;MN; 10×EDO;DMS;80Q;5fza26-753
Crystal structure of the catalytic domain of human JARID1B in complex with succinatemonomer ZN;MN;FUM;EDO;5fy426-753
Crystal structure of the catalytic domain of PLU1 in complex with N-oxalylglycine.monomer ZN;PO4;MN;EDO;EPE;OGA;5a1f26-753
Crystal structure of the catalytic domain of human JARID1B in complex with Maybridge fragment 3-p...monomer ZN;CL;PO4;MN; 18×EDO;N6Y;DMS;5fyy26-753
Crystal structure of the catalytic domain of human JARID1B in complex with Maybridge fragment 4-P...monomer ZN;CL;PO4;MN;EDO;DMS;EPE;YS6;5fzb26-753
Crystal structure of human JARID1B in complex with GSKJ1monomer ZN;PO4;MN;EDO;K0I;EPE;5fpu26-753
Crystal structure of the catalytic domain of human JARID1B in complex with Maybridge fragment eth...monomer ZN;CL;PO4;MN;EDO;WGT;DMS;5fz726-753
Crystal structure of human JARID1B in complex with GSK467monomer ZN;NA;PO4;MN;EDO;GZA;EPE;5fun26-753
Crystal structure of the catalytic domain of human JARID1B in complex with Maybridge fragment N05...monomer ZN;CL;MN1;PO4;MN; 10×EDO;DMS;EPE;5fz626-753
Crystal structure of human JARID1B construct c2 in complex with N- Oxalylglycine.monomer ZN;CL;MN;EDO;DMS;EPE;OGA;5fv326-753
Crystal structure of human JARID1B in complex with S40650amonomer ZN;MN;DMS;EDO;79H;5lwb26-753
Crystal structure of the catalytic domain of human JARID1B in complex with Maybridge fragment 2,4...monomer W77;PO4;MN;ZN; 12×EDO;DMS;5fz126-753
Crystal structure of the catalytic domain of human JARID1B in complex with 2,5-dichloro-N-(pyridi...monomer ZN;CL;PO4;MN;EDO;DMS;DJ6;EPE;5fz026-753
Crystal structure of the catalytic domain of human JARID1B in complex with fumaratemonomer EPE;ZN;MN;FUM;EDO;5fy526-753
Crystal structure of the catalytic domain of human JARID1B in complex with 3D fragment 5-(2-fluor...monomer P60;ZN;CL;PO4;MN; 10×EDO;DMS;5fzm26-753
Crystal structure of the catalytic domain of human JARID1B in complex with Maybridge fragment 3,6...monomer ZN;CL;7SI;PO4;MN;EDO;DMS;5fz326-753
Crystal structure of the catalytic domain of human JARID1B in complex with 3D fragment 3-methyl-N...monomer ZN;CL;PO4;MN; 10×EDO;DMS;UOI;5fzl26-753
Crystal structure of KDM5B in complex with S49195a.monomer NI;ZN;90V;MN;EDO;DMS;6ek6347-754
Solution NMR structure of PHD type Zinc finger domain of Lysine-specific demethylase 5B (PLU-1/JA...monomer ZN;2ma51487-1544
NMR Structure of KDM5B PHD1 fingermonomer ZN;2mny306-360
NMR Structure of KDM5B PHD1 finger in complex with H3K4me0(1-10aa)monomer ZN;2mnz306-360

Homology models

Oligo-stateLigandsQMEANTemplateRangeSeq id (%)ReportDownloadAssess
monomer -2.575j1i.1.A960-1071
14.85
monomer NI;ZN;6QN;-3.975k4l.1.A25-801
65.35
monomer -4.021u4q.1.A797-1074
13.39

Homology models built on isoform sequence

Isoform #Oligo-stateLigandsQMEANTemplateRangeSeq id (%)ReportDownloadAssess
2monomerZN;-1.862mny.1.A342-396
100.00
2monomerZN;-0.882ma5.1.A1523-1580
100.00
2monomer-2.575j1i.1.A996-1107
14.85
2monomerNI;ZN;6QN;-4.625k4l.1.A25-837
63.60
2monomer-4.271u4q.2.A833-1110
13.39