Q9Y239 | SWISS-MODEL Repository

Q9Y239 (NOD1_HUMAN) Homo sapiens (Human)

Nucleotide-binding oligomerization domain-containing protein 1 UniProtKB InterPro STRING Interactive Modelling

953 aa; Sequence (Fasta) ; (Isoform 2; Isoform 3); 1 identical sequence: Homo sapiens: A0A024RA73

It is possible new templates exist for this target since these models were created.

Available Structures

6 Experimental Structures

Description	PDB ID	Oligo-state	Range	Ligands
Crystal Structure of a Complex of NOD1 CARD and Ubiquitin	4jqw SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P0CG48;	17-108	1×PO4;
Assess
Crystal Structure Analysis of Caspase-recruitment Domain (CARD) of Nod1	2nz7 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	homo-2-mer	9-106
Assess
Crystal structure of Caspace Activation and Recruitment Domain (CARD) of NOD1	2nsn SMTL PDBe PDBe-KB PDBj PDBsum RCSB	homo-2-mer	16-108
Assess
NOD1 card domain with three disulfide-clinched, domain-swapped dimers in the asymmetric unit	4e9m SMTL PDBe PDBe-KB PDBj PDBsum RCSB	monomer	14-110
Assess
Solution structure of the NOD1 Caspase Activating and Recruitment Domain	2b1w SMTL PDBe PDBe-KB PDBj PDBsum RCSB	monomer	15-110
Assess
Solution structure of the CARD domain in human caspase recruitment domain protein 4 (Nod1 protein)	2dbd SMTL PDBe PDBe-KB PDBj PDBsum RCSB	monomer	17-110
Assess

6 SWISS-MODEL models

Template	Oligo-state	QMEANDisCo	Range	Ligands	Trg-Tpl Seq id (%)
5irm.1.A	homo-2-mer	0.68	123-948		35.94
Assess
8ej4.1.A	monomer	0.56	127-946		23.63
Assess
7vtq.1.A	homo-12-mer	0.55	128-946		23.28
Assess
7wbt.1.A	homo-2-mer	0.53	128-946		20.67
Assess
7pzc.1.A	homo-10-mer	0.53	126-947		23.57
Assess
8h94.1.A	monomer	0.52	179-946		21.83
Assess

Model ID	Oligo-state	Avg pLDDT	Range	Trg-Mdl Seq Id (%)

Model ID	Oligo-state	Avg Confidence	Range	Trg-Mdl Seq id (%)

8 SWISS-MODEL models built on isoform sequence

Template	Isoform	Oligo-state	QMEANDisCo	Range	Ligands	Trg-Tpl Seq id (%)
Isoform 2	4e9m.1.A	monomer	0.76	14-110		100.00
Assess
Isoform 2	2b1w.1.A	monomer	0.63	15-110		100.00
Assess
Isoform 3	5irm.1.A	homo-2-mer	0.66	122-920		34.49
Assess
Isoform 3	8swk.1.A	homo-6-mer	0.53	127-919		23.27
Assess
Isoform 3	7vtq.1.A	homo-12-mer	0.53	128-918		23.35
Assess
Isoform 3	8swf.1.A	homo-8-mer	0.53	127-919		23.27
Assess
Isoform 3	7wbt.1.A	homo-2-mer	0.52	128-918		21.76
Assess
Isoform 3	7pzc.1.A	homo-10-mer	0.52	126-919		23.38
Assess

Alignments