Q9Y4P1 | SWISS-MODEL Repository

Q9Y4P1 (ATG4B_HUMAN) Homo sapiens (Human)

Cysteine protease ATG4B UniProtKB InterPro STRING Interactive Modelling

393 aa; Sequence (Fasta) ; (Isoform 2; Isoform 3; Isoform 4; Isoform 6)

It is possible new templates exist for this target since these models were created.

Available Structures

7 Experimental Structures

Description	PDB ID	Oligo-state	Range	Ligands
The crystal structure of human Atg4B- LC3(1-124) complex	2z0e SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer Q62625;	4-353
Assess
The crystal structure of human Atg4B- LC3(1-120) complex	2z0d SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer Q62625;	5-353
Assess
The crystal structure of human Atg4B(C74S)- LC3(1-124) complex	2zzp SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer Q62625;	6-353
Assess
GABARAP-L1 ATG4B LIR Complex	5lxi SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer Q9H0R8;	384-393	3×MG; 2×PGE; 1×EDO; 2×PER; 1×PEG;
Assess
GABARAP-L1 ATG4B LIR Complex	5lxh SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer Q9H0R8;	384-393	1×SO4;
Assess
The crystal structure of human Atg4B	2cy7 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	monomer	5-377
Assess
Structure of human Atg4b	2d1i SMTL PDBe PDBe-KB PDBj PDBsum RCSB	monomer	10-373
Assess

1 SWISS-MODEL model

Template	Oligo-state	QMEANDisCo	Range	Ligands	Trg-Tpl Seq id (%)
2cy7.1.A	monomer	0.84	5-377		99.75
Assess

Model ID	Oligo-state	Avg pLDDT	Range	Trg-Mdl Seq Id (%)

Model ID	Oligo-state	Avg Confidence	Range	Trg-Mdl Seq id (%)

4 SWISS-MODEL models built on isoform sequence

Template	Isoform	Oligo-state	QMEANDisCo	Range	Ligands	Trg-Tpl Seq id (%)
Isoform 2	2cy7.1.A	monomer	0.80	93-460		99.19
Assess
Isoform 3	2d1i.1.A	monomer	0.81	1-266		92.86
Assess
Isoform 4	2d1i.1.A	monomer	0.80	1-311		99.37
Assess
Isoform 6	2cy7.1.A	monomer	0.85	5-362		99.72
Assess

Alignments