SMTL ID : 13pk.3 (3 other biounits)

TERNARY COMPLEX OF PHOSPHOGLYCERATE KINASE FROM TRYPANOSOMA BRUCEI

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

monomer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 4 residues within 4Å: Chain A: K.215, D.373 Ligands: PO4.2, ADP.5 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:D.373

3 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.2: 7 residues within 4Å: Chain A: R.35, K.215, G.371, G.372, G.394 Ligands: MG.1, ADP.5 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:N.22, A:N.334, A:G.372 Water bridges: A:R.35 Salt bridges: A:R.35, A:K.215 PO4.3: 3 residues within 4Å: Chain A: F.340, F.350, L.380 No protein-ligand interaction detected (PLIP) PO4.4: 3 residues within 4Å: Chain A: K.44, L.99, R.101 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.101

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.5: 22 residues within 4Å: Chain A: G.213, A.214, K.215, K.219, G.237, A.238, Y.241, F.290, A.310, L.311, N.334, G.335, P.336, G.338, V.339, E.341, G.371, G.372, D.373, S.374 Ligands: MG.1, PO4.2 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:A.214, A:A.238, A:Y.241, A:A.310, A:N.334, A:G.335, A:E.341, A:D.373, A:D.373, A:S.374 Water bridges: A:G.372 Salt bridges: A:K.219, A:K.219

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bernstein, B.E. et al., Synergistic effects of substrate-induced conformational changes in phosphoglycerate kinase activation. Nature (1997)

Release Date

1997-12-24

Peptides

3-PHOSPHOGLYCERATE KINASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

3-PHOSPHOGLYCERATE KINASE

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