SMTL ID : 1a1n.1

MHC CLASS I MOLECULE B*3501 COMPLEXED WITH PEPTIDE VPLRPMTY FROM THE NEF PROTEIN (75-82) OF HIV1

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

hetero-1-1-mer

Ligands

1 x VAL- PRO- LEU- ARG- PRO- MET- THR- TYR: PEPTIDE VPLRPMTY(Non-covalent)

VAL-PRO-LEU-ARG-PRO-MET-THR-TYR.1: 26 residues within 4Å: Chain A: Y.7, Y.9, R.62, N.63, I.66, F.67, T.69, T.73, Y.74, E.76, S.77, N.80, L.81, Y.84, I.95, R.97, Y.99, S.116, Y.123, T.143, K.146, W.147, V.152, L.156, Y.159, W.167 29 PLIP interactions: 29 interactions with chain A Hydrophobic interactions: A:I.66, A:F.67, A:T.69, A:Y.74, A:E.76, A:L.81, A:I.95, A:Y.99, A:Y.123, A:Y.159 Hydrogen bonds: A:Y.7, A:R.62, A:R.62, A:Y.74, A:S.77, A:R.97, A:Y.99, A:Y.99, A:S.116, A:T.143, A:Y.159, A:W.167 Water bridges: A:Y.9, A:N.70, A:N.70, A:T.73, A:S.77 Salt bridges: A:K.146 pi-Stacking: A:W.147

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Smith, K.J. et al., An altered position of the alpha 2 helix of MHC class I is revealed by the crystal structure of HLA-B*3501. Immunity (1996)

Release Date

1998-04-08

Peptides

HLA class I histocompatibility antigen, BW-53 B*5301 alpha chain: A
Beta-2-microglobulin: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

HLA class I histocompatibility antigen, BW-53 B*5301 alpha chain

Beta-2-microglobulin

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