- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.10 Å
- Oligo State
- homo-tetramer
- Ligands
- 8 x FBP: 1,6-di-O-phosphono-beta-D-fructofuranose(Non-covalent)
- 12 x CD: CADMIUM ION(Non-covalent)
CD.3: 2 residues within 4Å:- Chain A: E.218, E.221
4 PLIP interactions:4 interactions with chain A- Metal complexes: A:E.218, A:E.218, A:E.221, A:E.221
CD.4: 3 residues within 4Å:- Chain A: E.239, E.245
- Chain C: R.162
3 PLIP interactions:3 interactions with chain A- Metal complexes: A:E.239, A:E.245, A:E.245
CD.5: 3 residues within 4Å:- Chain A: D.145, H.172
- Ligands: OXM.6
5 PLIP interactions:2 interactions with chain A, 3 Ligand-Water interactions- Metal complexes: A:D.145, A:D.145, H2O.11, H2O.18, H2O.24
CD.10: 2 residues within 4Å:- Chain B: E.218, E.221
4 PLIP interactions:4 interactions with chain B- Metal complexes: B:E.218, B:E.218, B:E.221, B:E.221
CD.11: 3 residues within 4Å:- Chain B: E.239, E.245
- Chain D: R.162
3 PLIP interactions:3 interactions with chain B- Metal complexes: B:E.239, B:E.245, B:E.245
CD.12: 3 residues within 4Å:- Chain B: D.145, H.172
- Ligands: OXM.13
5 PLIP interactions:2 interactions with chain B, 3 Ligand-Water interactions- Metal complexes: B:D.145, B:D.145, H2O.5, H2O.10, H2O.24
CD.17: 2 residues within 4Å:- Chain C: E.218, E.221
4 PLIP interactions:4 interactions with chain C- Metal complexes: C:E.218, C:E.218, C:E.221, C:E.221
CD.18: 3 residues within 4Å:- Chain A: R.162
- Chain C: E.239, E.245
3 PLIP interactions:3 interactions with chain C- Metal complexes: C:E.239, C:E.245, C:E.245
CD.19: 3 residues within 4Å:- Chain C: D.145, H.172
- Ligands: OXM.20
5 PLIP interactions:2 interactions with chain C, 3 Ligand-Water interactions- Metal complexes: C:D.145, C:D.145, H2O.37, H2O.44, H2O.50
CD.24: 2 residues within 4Å:- Chain D: E.218, E.221
4 PLIP interactions:4 interactions with chain D- Metal complexes: D:E.218, D:E.218, D:E.221, D:E.221
CD.25: 3 residues within 4Å:- Chain B: R.162
- Chain D: E.239, E.245
3 PLIP interactions:3 interactions with chain D- Metal complexes: D:E.239, D:E.245, D:E.245
CD.26: 3 residues within 4Å:- Chain D: D.145, H.172
- Ligands: OXM.27
5 PLIP interactions:2 interactions with chain D, 3 Ligand-Water interactions- Metal complexes: D:D.145, D:D.145, H2O.31, H2O.37, H2O.50
- 4 x OXM: OXAMIC ACID(Non-covalent)
OXM.6: 6 residues within 4Å:- Chain A: N.117, H.172, A.216, I.220
- Ligands: CD.5, NAD.7
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:N.117, A:N.117, A:T.226
- Water bridges: A:A.216
- Salt bridges: A:H.172
OXM.13: 6 residues within 4Å:- Chain B: N.117, H.172, A.216, I.220
- Ligands: CD.12, NAD.14
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:N.117, B:N.117, B:T.226
- Water bridges: B:A.216
- Salt bridges: B:H.172
OXM.20: 6 residues within 4Å:- Chain C: N.117, H.172, A.216, I.220
- Ligands: CD.19, NAD.21
5 PLIP interactions:5 interactions with chain C- Hydrogen bonds: C:N.117, C:N.117, C:T.226
- Water bridges: C:A.216
- Salt bridges: C:H.172
OXM.27: 6 residues within 4Å:- Chain D: N.117, H.172, A.216, I.220
- Ligands: CD.26, NAD.28
5 PLIP interactions:5 interactions with chain D- Hydrogen bonds: D:N.117, D:N.117, D:T.226
- Water bridges: D:A.216
- Salt bridges: D:H.172
- 4 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)
NAD.7: 21 residues within 4Å:- Chain A: V.6, G.7, G.9, R.10, V.11, I.31, D.32, V.33, Y.62, A.74, A.75, G.76, V.77, N.92, V.95, T.116, N.117, I.220, A.225, T.226
- Ligands: OXM.6
16 PLIP interactions:16 interactions with chain A- Hydrophobic interactions: A:I.220
- Hydrogen bonds: A:R.10, A:V.11, A:V.33, A:G.76, A:V.77, A:N.92, A:N.117, A:N.117, A:T.226, A:T.226
- Water bridges: A:G.9, A:G.12, A:R.37, A:Y.62, A:Y.62
NAD.14: 21 residues within 4Å:- Chain B: V.6, G.7, G.9, R.10, V.11, I.31, D.32, V.33, Y.62, A.74, A.75, G.76, V.77, N.92, V.95, T.116, N.117, I.220, A.225, T.226
- Ligands: OXM.13
16 PLIP interactions:16 interactions with chain B- Hydrophobic interactions: B:I.220
- Hydrogen bonds: B:R.10, B:V.11, B:V.33, B:Y.62, B:G.76, B:V.77, B:N.117, B:N.117, B:T.226, B:T.226
- Water bridges: B:G.9, B:G.12, B:R.37, B:Y.62, B:N.92
NAD.21: 22 residues within 4Å:- Chain C: V.6, G.7, L.8, G.9, R.10, V.11, I.31, D.32, V.33, Y.62, A.74, A.75, G.76, V.77, N.92, V.95, T.116, N.117, I.220, A.225, T.226
- Ligands: OXM.20
16 PLIP interactions:16 interactions with chain C- Hydrophobic interactions: C:I.220
- Hydrogen bonds: C:R.10, C:V.11, C:V.33, C:G.76, C:V.77, C:N.92, C:N.117, C:N.117, C:T.226, C:T.226
- Water bridges: C:G.9, C:G.12, C:R.37, C:Y.62, C:Y.62
NAD.28: 21 residues within 4Å:- Chain D: V.6, G.7, G.9, R.10, V.11, I.31, D.32, V.33, Y.62, A.74, A.75, G.76, V.77, N.92, V.95, T.116, N.117, I.220, A.225, T.226
- Ligands: OXM.27
16 PLIP interactions:16 interactions with chain D- Hydrophobic interactions: D:I.220
- Hydrogen bonds: D:R.10, D:V.11, D:V.33, D:Y.62, D:G.76, D:V.77, D:N.117, D:N.117, D:T.226, D:T.226
- Water bridges: D:G.9, D:G.12, D:R.37, D:Y.62, D:N.92
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Auerbach, G. et al., Lactate dehydrogenase from the hyperthermophilic bacterium thermotoga maritima: the crystal structure at 2.1 A resolution reveals strategies for intrinsic protein stabilization. Structure (1998)
- Release Date
- 1999-03-23
- Peptides
- L-LACTATE DEHYDROGENASE: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.10 Å
- Oligo State
- homo-tetramer
- Ligands
- 8 x FBP: 1,6-di-O-phosphono-beta-D-fructofuranose(Non-covalent)
- 12 x CD: CADMIUM ION(Non-covalent)
- 4 x OXM: OXAMIC ACID(Non-covalent)
- 4 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Auerbach, G. et al., Lactate dehydrogenase from the hyperthermophilic bacterium thermotoga maritima: the crystal structure at 2.1 A resolution reveals strategies for intrinsic protein stabilization. Structure (1998)
- Release Date
- 1999-03-23
- Peptides
- L-LACTATE DEHYDROGENASE: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A