SMTL ID : 1a9p.1

BOVINE PURINE NUCLEOSIDE PHOSPHORYLASE COMPLEXED WITH 9-DEAZAINOSINE AND PHOSPHATE

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-trimer

Ligands

3 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 9 residues within 4Å: Chain A: G.32, S.33, H.64, R.84, H.86, N.115, A.116, S.220 Ligands: 9DI.2 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:S.33, A:S.33, A:A.116, A:S.220 Water bridges: A:M.219 Salt bridges: A:H.64, A:R.84, A:H.86 PO4.3: 9 residues within 4Å: Chain B: G.32, S.33, H.64, R.84, H.86, N.115, A.116, S.220 Ligands: 9DI.4 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:S.33, B:S.33, B:A.116, B:S.220 Water bridges: B:M.219 Salt bridges: B:H.64, B:R.84, B:H.86 PO4.5: 9 residues within 4Å: Chain C: G.32, S.33, H.64, R.84, H.86, N.115, A.116, S.220 Ligands: 9DI.6 8 PLIP interactions: 8 interactions with chain C Hydrogen bonds: C:S.33, C:S.33, C:A.116, C:S.220 Water bridges: C:M.219 Salt bridges: C:H.64, C:R.84, C:H.86

3 x 9DI: 9-DEAZAINOSINE(Non-covalent)

9DI.2: 18 residues within 4Å: Chain A: S.33, H.86, Y.88, A.116, A.117, G.118, F.200, E.201, V.217, G.218, M.219, T.242, N.243, V.245, H.257, E.259 Chain C: F.159 Ligands: PO4.1 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:S.33, A:Y.88, A:Y.88, A:E.201, A:M.219, A:T.242, A:N.243, A:N.243 Water bridges: A:A.116, A:A.116 pi-Stacking: A:F.200 9DI.4: 18 residues within 4Å: Chain A: F.159 Chain B: S.33, H.86, Y.88, A.116, A.117, G.118, F.200, E.201, V.217, G.218, M.219, T.242, N.243, V.245, H.257, E.259 Ligands: PO4.3 11 PLIP interactions: 11 interactions with chain B Hydrogen bonds: B:S.33, B:Y.88, B:Y.88, B:E.201, B:M.219, B:T.242, B:N.243, B:N.243 Water bridges: B:A.116, B:Y.192 pi-Stacking: B:F.200 9DI.6: 18 residues within 4Å: Chain B: F.159 Chain C: S.33, H.86, Y.88, A.116, A.117, G.118, F.200, E.201, V.217, G.218, M.219, T.242, N.243, V.245, H.257, E.259 Ligands: PO4.5 11 PLIP interactions: 11 interactions with chain C Hydrogen bonds: C:S.33, C:Y.88, C:Y.88, C:E.201, C:M.219, C:T.242, C:N.243, C:N.243 Water bridges: C:A.116, C:Y.192 pi-Stacking: C:F.200

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mao, C. et al., Calf spleen purine nucleoside phosphorylase complexed with substrates and substrate analogues. Biochemistry (1998)

Release Date

1998-07-15

Peptides

PURINE NUCLEOSIDE PHOSPHORYLASE: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

PURINE NUCLEOSIDE PHOSPHORYLASE

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