SMTL ID : 1ahu.1

STRUCTURE OF THE OCTAMERIC FLAVOENZYME VANILLYL-ALCOHOL OXIDASE IN COMPLEX WITH P-CRESOL

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

homo-octamer

Ligands

8 x FAA: N5-(4-HYDROXYBENZYL)FLAVIN-ADENINE DINUCLEOTIDE(Covalent)

FAA.1: 30 residues within 4Å: Chain A: W.98, P.99, I.100, S.101, I.102, G.103, R.104, N.105, M.123, P.169, D.170, L.171, G.174, S.175, N.179, E.182, G.184, V.185, Y.187, G.260, I.261, V.262, W.413, I.414, H.422, F.424, I.468, Y.503, R.504, K.545 24 PLIP interactions: 24 interactions with chain A Hydrophobic interactions: A:D.170, A:L.171, A:W.413, A:F.424 Hydrogen bonds: A:S.101, A:S.101, A:I.102, A:G.103, A:R.104, A:N.105, A:D.170, A:S.175, A:N.179, A:E.182, A:V.185, A:V.185, A:V.262, A:Y.503, A:R.504, A:R.504, A:K.545 Water bridges: A:R.104, A:L.171 pi-Stacking: A:F.424 FAA.2: 30 residues within 4Å: Chain B: W.98, P.99, I.100, S.101, I.102, G.103, R.104, N.105, M.123, P.169, D.170, L.171, G.174, S.175, N.179, E.182, G.184, V.185, Y.187, G.260, I.261, V.262, W.413, I.414, H.422, F.424, I.468, Y.503, R.504, K.545 23 PLIP interactions: 23 interactions with chain B Hydrophobic interactions: B:D.170, B:L.171, B:W.413, B:F.424 Hydrogen bonds: B:S.101, B:S.101, B:I.102, B:G.103, B:R.104, B:N.105, B:D.170, B:S.175, B:N.179, B:V.185, B:V.185, B:Y.187, B:V.262, B:Y.503, B:Y.503, B:R.504, B:R.504, B:K.545 pi-Stacking: B:F.424 FAA.3: 30 residues within 4Å: Chain C: W.98, P.99, I.100, S.101, I.102, G.103, R.104, N.105, M.123, P.169, D.170, L.171, G.174, S.175, N.179, E.182, G.184, V.185, Y.187, G.260, I.261, V.262, W.413, I.414, H.422, F.424, I.468, Y.503, R.504, K.545 24 PLIP interactions: 24 interactions with chain C Hydrophobic interactions: C:D.170, C:L.171, C:W.413, C:F.424 Hydrogen bonds: C:S.101, C:S.101, C:I.102, C:G.103, C:R.104, C:N.105, C:D.170, C:S.175, C:N.179, C:E.182, C:V.185, C:V.185, C:V.262, C:Y.503, C:R.504, C:R.504, C:K.545 Water bridges: C:R.104, C:L.171 pi-Stacking: C:F.424 FAA.4: 30 residues within 4Å: Chain D: W.98, P.99, I.100, S.101, I.102, G.103, R.104, N.105, M.123, P.169, D.170, L.171, G.174, S.175, N.179, E.182, G.184, V.185, Y.187, G.260, I.261, V.262, W.413, I.414, H.422, F.424, I.468, Y.503, R.504, K.545 23 PLIP interactions: 23 interactions with chain D Hydrophobic interactions: D:D.170, D:L.171, D:W.413, D:F.424 Hydrogen bonds: D:S.101, D:S.101, D:I.102, D:G.103, D:R.104, D:N.105, D:D.170, D:S.175, D:N.179, D:V.185, D:V.185, D:Y.187, D:V.262, D:Y.503, D:Y.503, D:R.504, D:R.504, D:K.545 pi-Stacking: D:F.424 FAA.5: 30 residues within 4Å: Chain E: W.98, P.99, I.100, S.101, I.102, G.103, R.104, N.105, M.123, P.169, D.170, L.171, G.174, S.175, N.179, E.182, G.184, V.185, Y.187, G.260, I.261, V.262, W.413, I.414, H.422, F.424, I.468, Y.503, R.504, K.545 24 PLIP interactions: 24 interactions with chain E Hydrophobic interactions: E:D.170, E:L.171, E:W.413, E:F.424 Hydrogen bonds: E:S.101, E:S.101, E:I.102, E:G.103, E:R.104, E:N.105, E:D.170, E:S.175, E:N.179, E:E.182, E:V.185, E:V.185, E:V.262, E:Y.503, E:R.504, E:R.504, E:K.545 Water bridges: E:R.104, E:L.171 pi-Stacking: E:F.424 FAA.6: 30 residues within 4Å: Chain F: W.98, P.99, I.100, S.101, I.102, G.103, R.104, N.105, M.123, P.169, D.170, L.171, G.174, S.175, N.179, E.182, G.184, V.185, Y.187, G.260, I.261, V.262, W.413, I.414, H.422, F.424, I.468, Y.503, R.504, K.545 23 PLIP interactions: 23 interactions with chain F Hydrophobic interactions: F:D.170, F:L.171, F:W.413, F:F.424 Hydrogen bonds: F:S.101, F:S.101, F:I.102, F:G.103, F:R.104, F:N.105, F:D.170, F:S.175, F:N.179, F:V.185, F:V.185, F:Y.187, F:V.262, F:Y.503, F:Y.503, F:R.504, F:R.504, F:K.545 pi-Stacking: F:F.424 FAA.7: 30 residues within 4Å: Chain G: W.98, P.99, I.100, S.101, I.102, G.103, R.104, N.105, M.123, P.169, D.170, L.171, G.174, S.175, N.179, E.182, G.184, V.185, Y.187, G.260, I.261, V.262, W.413, I.414, H.422, F.424, I.468, Y.503, R.504, K.545 24 PLIP interactions: 24 interactions with chain G Hydrophobic interactions: G:D.170, G:L.171, G:W.413, G:F.424 Hydrogen bonds: G:S.101, G:S.101, G:I.102, G:G.103, G:R.104, G:N.105, G:D.170, G:S.175, G:N.179, G:E.182, G:V.185, G:V.185, G:V.262, G:Y.503, G:R.504, G:R.504, G:K.545 Water bridges: G:R.104, G:L.171 pi-Stacking: G:F.424 FAA.8: 30 residues within 4Å: Chain H: W.98, P.99, I.100, S.101, I.102, G.103, R.104, N.105, M.123, P.169, D.170, L.171, G.174, S.175, N.179, E.182, G.184, V.185, Y.187, G.260, I.261, V.262, W.413, I.414, H.422, F.424, I.468, Y.503, R.504, K.545 23 PLIP interactions: 23 interactions with chain H Hydrophobic interactions: H:D.170, H:L.171, H:W.413, H:F.424 Hydrogen bonds: H:S.101, H:S.101, H:I.102, H:G.103, H:R.104, H:N.105, H:D.170, H:S.175, H:N.179, H:V.185, H:V.185, H:Y.187, H:V.262, H:Y.503, H:Y.503, H:R.504, H:R.504, H:K.545 pi-Stacking: H:F.424

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mattevi, A. et al., Crystal structures and inhibitor binding in the octameric flavoenzyme vanillyl-alcohol oxidase: the shape of the active-site cavity controls substrate specificity. Structure (1997)

Release Date

1997-10-15

Peptides

VANILLYL-ALCOHOL OXIDASE: ABCDEFGH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

E
A

F
B

G
A

H
B

VANILLYL-ALCOHOL OXIDASE

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