SMTL ID : 1aky.1

HIGH-RESOLUTION STRUCTURES OF ADENYLATE KINASE FROM YEAST LIGATED WITH INHIBITOR AP5A, SHOWING THE PATHWAY OF PHOSPHORYL TRANSFER

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.63 Å

Oligo State

monomer

Ligands

1 x AP5: BIS(ADENOSINE)-5'-PENTAPHOSPHATE(Non-covalent)

AP5.1: 37 residues within 4Å: Chain A: P.13, G.14, A.15, G.16, K.17, G.18, T.19, Q.20, T.35, G.36, L.39, R.40, M.57, G.61, L.62, V.63, M.68, G.90, F.91, R.93, Q.97, R.128, I.129, R.132, S.141, Y.142, H.143, F.146, N.147, R.165, R.176, A.202, Q.204, P.205, P.206, V.209 Ligands: IMD.2 47 PLIP interactions: 47 interactions with chain A Hydrogen bonds: A:G.14, A:G.16, A:K.17, A:G.18, A:T.19, A:T.35, A:G.36, A:G.61, A:V.63, A:R.93, A:R.93, A:Q.97, A:Q.97, A:S.141, A:N.147, A:Q.204 Water bridges: A:K.17, A:K.17, A:K.17, A:T.19, A:M.57, A:R.93, A:R.128, A:R.128, A:R.128, A:R.128, A:R.128, A:R.132, A:R.132, A:R.176 Salt bridges: A:K.17, A:K.17, A:K.17, A:K.17, A:R.40, A:R.93, A:R.93, A:R.132, A:R.132, A:R.132, A:R.165, A:R.165, A:R.165, A:R.176, A:R.176 pi-Cation interactions: A:R.93, A:R.128

1 x IMD: IMIDAZOLE(Non-covalent)

IMD.2: 9 residues within 4Å: Chain A: G.18, H.32, A.34, D.37, R.40, D.89, R.132, R.165 Ligands: AP5.1 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.89

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Abele, U. et al., High-resolution structures of adenylate kinase from yeast ligated with inhibitor Ap5A, showing the pathway of phosphoryl transfer. Protein Sci. (1995)

Release Date

1995-11-14

Peptides

ADENYLATE KINASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

ADENYLATE KINASE

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