SMTL ID : 1atl.2 (1 other biounit)

Structural interaction of natural and synthetic inhibitors with the VENOM METALLOPROTEINASE, ATROLYSIN C (FORM-D)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.142, H.146, H.152 Ligands: 0QI.3 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Ligand interactions Metal complexes: A:H.142, A:H.146, A:H.152, 0QI.3

1 x CA: CALCIUM ION(Non-covalent)

CA.2: 4 residues within 4Å: Chain A: E.9, D.93, C.197, N.200 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.9, A:D.93, A:D.93, A:C.197, H2O.3

1 x 0QI: O-methyl-N-[(2S)-4-methyl-2-(sulfanylmethyl)pentanoyl]-L-tyrosine(Non-covalent)

0QI.3: 14 residues within 4Å: Chain A: E.106, T.107, L.108, G.109, H.142, E.143, H.146, H.152, I.165, R.167, P.168, G.169, L.170 Ligands: ZN.1 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:L.170 Hydrogen bonds: A:L.108, A:G.109, A:P.168 Water bridges: A:T.171 Salt bridges: A:H.142, A:H.146, A:H.152 pi-Stacking: A:H.142

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, D. et al., Structural interaction of natural and synthetic inhibitors with the venom metalloproteinase, atrolysin C (form d). Proc.Natl.Acad.Sci.USA (1994)

Release Date

1995-10-15

Peptides

Snake venom metalloproteinase atrolysin-D: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Snake venom metalloproteinase atrolysin-D

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