SMTL ID : 1b25.1

FORMALDEHYDE FERREDOXIN OXIDOREDUCTASE FROM PYROCOCCUS FURIOSUS

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

homo-tetramer

Ligands

4 x SF4: IRON/SULFUR CLUSTER(Non-covalent)

SF4.1: 11 residues within 4Å: Chain A: S.72, K.75, R.180, G.283, C.284, C.287, M.289, P.290, C.291, C.491 Ligands: PTT.2 4 PLIP interactions: 4 interactions with chain A, Metal complexes: A:C.284, A:C.287, A:C.291, A:C.491 SF4.3: 11 residues within 4Å: Chain B: S.72, K.75, R.180, G.283, C.284, C.287, M.289, P.290, C.291, C.491 Ligands: PTT.4 4 PLIP interactions: 4 interactions with chain B, Metal complexes: B:C.284, B:C.287, B:C.291, B:C.491 SF4.5: 11 residues within 4Å: Chain C: S.72, K.75, R.180, G.283, C.284, C.287, M.289, P.290, C.291, C.491 Ligands: PTT.6 4 PLIP interactions: 4 interactions with chain C, Metal complexes: C:C.284, C:C.287, C:C.291, C:C.491 SF4.7: 11 residues within 4Å: Chain D: S.72, K.75, R.180, G.283, C.284, C.287, M.289, P.290, C.291, C.491 Ligands: PTT.8 4 PLIP interactions: 4 interactions with chain D, Metal complexes: D:C.284, D:C.287, D:C.291, D:C.491

4 x PTT: TUNGSTOPTERIN(Non-covalent)

PTT.2: 34 residues within 4Å: Chain A: K.75, G.91, N.92, L.93, G.94, G.179, R.180, A.181, A.182, G.183, R.184, T.240, E.304, D.306, Y.307, E.308, N.309, A.332, D.333, M.337, D.338, T.339, I.340, H.436, H.437, K.438, F.485, E.486, T.489, A.490, C.491, R.492, L.493 Ligands: SF4.1 32 PLIP interactions: 30 interactions with chain A, 2 Ligand-Water interactions Hydrogen bonds: A:K.75, A:N.92, A:N.92, A:G.94, A:A.181, A:A.181, A:G.183, A:R.184, A:Y.307, A:E.308, A:N.309, A:M.337, A:D.338, A:T.339, A:K.438, A:A.490, A:R.492, A:R.492 Water bridges: A:E.304, A:E.486, A:E.486, A:R.492, A:R.492 Salt bridges: A:K.75, A:R.180, A:D.333, A:H.436, A:K.438, A:E.486 Metal complexes: A:A.181, H2O.11, H2O.11 PTT.4: 35 residues within 4Å: Chain B: K.75, G.91, N.92, L.93, G.94, G.179, R.180, A.181, A.182, G.183, R.184, T.240, C.284, E.304, D.306, Y.307, E.308, N.309, A.332, D.333, M.337, D.338, T.339, I.340, H.436, H.437, K.438, F.485, E.486, T.489, A.490, C.491, R.492, L.493 Ligands: SF4.3 33 PLIP interactions: 31 interactions with chain B, 2 Ligand-Water interactions Hydrogen bonds: B:K.75, B:N.92, B:N.92, B:G.94, B:A.181, B:A.181, B:G.183, B:R.184, B:T.240, B:Y.307, B:E.308, B:N.309, B:A.332, B:D.338, B:T.339, B:K.438, B:A.490, B:R.492, B:R.492 Water bridges: B:E.304, B:E.486, B:E.486, B:R.492, B:R.492 Salt bridges: B:K.75, B:R.180, B:D.333, B:H.436, B:K.438, B:E.486 Metal complexes: B:N.92, H2O.24, H2O.24 PTT.6: 34 residues within 4Å: Chain C: K.75, G.91, N.92, L.93, G.94, G.179, R.180, A.181, A.182, G.183, R.184, T.240, E.304, D.306, Y.307, E.308, N.309, A.332, D.333, M.337, D.338, T.339, I.340, H.436, H.437, K.438, F.485, E.486, T.489, A.490, C.491, R.492, L.493 Ligands: SF4.5 36 PLIP interactions: 34 interactions with chain C, 2 Ligand-Water interactions Hydrogen bonds: C:K.75, C:N.92, C:N.92, C:G.94, C:A.181, C:A.181, C:G.183, C:R.184, C:T.240, C:Y.307, C:E.308, C:N.309, C:M.337, C:D.338, C:D.338, C:T.339, C:T.489, C:A.490, C:R.492, C:R.492 Water bridges: C:K.438, C:K.438, C:E.486, C:E.486, C:R.492, C:R.492 Salt bridges: C:K.75, C:R.180, C:D.333, C:H.436, C:K.438, C:E.486 Metal complexes: C:N.92, C:A.181, H2O.39, H2O.39 PTT.8: 34 residues within 4Å: Chain D: K.75, G.91, N.92, L.93, G.94, G.179, R.180, A.181, A.182, G.183, R.184, T.240, E.304, D.306, Y.307, E.308, N.309, A.332, D.333, M.337, D.338, T.339, I.340, H.436, H.437, K.438, F.485, E.486, T.489, A.490, C.491, R.492, L.493 Ligands: SF4.7 30 PLIP interactions: 29 interactions with chain D, 1 Ligand-Water interactions Hydrogen bonds: D:K.75, D:N.92, D:N.92, D:G.94, D:A.181, D:A.181, D:G.183, D:R.184, D:Y.307, D:E.308, D:N.309, D:M.337, D:D.338, D:T.339, D:K.438, D:T.489, D:A.490, D:R.492, D:R.492 Water bridges: D:R.492, D:R.492 Salt bridges: D:K.75, D:R.180, D:D.333, D:H.436, D:K.438, D:E.486 Metal complexes: D:N.92, D:A.181, H2O.52

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hu, Y. et al., Formaldehyde ferredoxin oxidoreductase from Pyrococcus furiosus: the 1.85 A resolution crystal structure and its mechanistic implications. J.Mol.Biol. (1999)

Release Date

1999-03-24

Peptides

PROTEIN (FORMALDEHYDE FERREDOXIN OXIDOREDUCTASE): ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

PROTEIN (FORMALDEHYDE FERREDOXIN OXIDOREDUCTASE)

Related Entries With Identical Sequence